mRNA_L-elsbetiae_contig15323.3779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15323.3779.1
Unique NamemRNA_L-elsbetiae_contig15323.3779.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15323.3779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15323contigL-elsbetiae_contig15323:452..903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size452
Cds size375
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.6556273-UTR-L-elsbetiae_contig15323:451..5281622815624.6556273-UTR-L-elsbetiae_contig15323:451..528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15323 452..528 +
1691682998.392659-UTR-L-elsbetiae_contig15323:451..5281691682998.392659-UTR-L-elsbetiae_contig15323:451..528Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15323 452..528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.6700985-CDS-L-elsbetiae_contig15323:528..9031622815624.6700985-CDS-L-elsbetiae_contig15323:528..903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15323 529..903 +
1691682998.4045398-CDS-L-elsbetiae_contig15323:528..9031691682998.4045398-CDS-L-elsbetiae_contig15323:528..903Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15323 529..903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15323.3779.1prot_L-elsbetiae_contig15323.3779.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15323 529..903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15323.3779.1

>prot_L-elsbetiae_contig15323.3779.1 ID=prot_L-elsbetiae_contig15323.3779.1|Name=mRNA_L-elsbetiae_contig15323.3779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MLFIWRHAFVLRLVGSWRMMRVDRAGAGLRIQTDGGGITASQPKMPSLED
RLLGENKAHTSWTFSHFRCFLLGWTNITSLHGIPMESPWSSASNVVVPFL
ITCFSFEHTHTLLFFYIHAVSHIFA
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mRNA from alignment at L-elsbetiae_contig15323:452..903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15323.3779.1 ID=mRNA_L-elsbetiae_contig15323.3779.1|Name=mRNA_L-elsbetiae_contig15323.3779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=452bp|location=Sequence derived from alignment at L-elsbetiae_contig15323:452..903+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTGAGGGGGCACCGTATAAGTAGGAAGGCGGGACGGGGCGGGTATCAG
GTATAGGGCCTGACGACCAAGTGGACCATGCTCTTTATCTGGAGACATGC
ATTTGTACTTCGGCTTGTAGGATCATGGCGAATGATGCGTGTGGACCGGG
CTGGTGCGGGACTGAGGATCCAAACTGACGGGGGTGGGATAACGGCGTCG
CAGCCGAAAATGCCGTCGCTCGAGGATCGATTGCTCGGTGAAAACAAAGC
ACACACATCATGGACTTTTTCACATTTTAGGTGTTTTCTACTGGGCTGGA
CCAATATTACGTCACTGCATGGAATACCGATGGAATCTCCCTGGAGCTCC
GCCTCCAATGTCGTGGTTCCATTTTTGATTACCTGCTTTTCTTTCGAACA
CACACACACACTTCTTTTCTTCTATATACATGCCGTTTCCCACATTTTCG
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15323:452..903+

>mRNA_L-elsbetiae_contig15323.3779.1 ID=mRNA_L-elsbetiae_contig15323.3779.1|Name=mRNA_L-elsbetiae_contig15323.3779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig15323:452..903+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTTTATCTGGAGACATGCATTTGTACTTCGGCTTGTAGGATCATG
GCGAATGATGCGTGTGGACCGGGCTGGTGCGGGACTGAGGATCCAAACTG
ACGGGGGTGGGATAACGGCGTCGCAGCCGAAAATGCCGTCGCTCGAGGAT
CGATTGCTCGGTGAAAACAAAGCACACACATCATGGACTTTTTCACATTT
TAGGTGTTTTCTACTGGGCTGGACCAATATTACGTCACTGCATGGAATAC
CGATGGAATCTCCCTGGAGCTCCGCCTCCAATGTCGTGGTTCCATTTTTG
ATTACCTGCTTTTCTTTCGAACACACACACACACTTCTTTTCTTCTATAT
ACATGCCGTTTCCCACATTTTCGCCATGCTCTTTATCTGGAGACATGCAT
TTGTACTTCGGCTTGTAGGATCATGGCGAATGATGCGTGTGGACCGGGCT
GGTGCGGGACTGAGGATCCAAACTGACGGGGGTGGGATAACGGCGTCGCA
GCCGAAAATGCCGTCGCTCGAGGATCGATTGCTCGGTGAAAACAAAGCAC
ACACATCATGGACTTTTTCACATTTTAGGTGTTTTCTACTGGGCTGGACC
AATATTACGTCACTGCATGGAATACCGATGGAATCTCCCTGGAGCTCCGC
CTCCAATGTCGTGGTTCCATTTTTGATTACCTGCTTTTCTTTCGAACACA
CACACACACTTCTTTTCTTCTATATACATGCCGTTTCCCACATTTTCGCC
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