mRNA_L-elsbetiae_contig15322.3778.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15322.3778.1
Unique NamemRNA_L-elsbetiae_contig15322.3778.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15322.3778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15322contigL-elsbetiae_contig15322:3453..4215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size763
Cds size429
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.6060622-UTR-L-elsbetiae_contig15322:3452..37861622815624.6060622-UTR-L-elsbetiae_contig15322:3452..3786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15322 3453..3786 +
1691682998.3663146-UTR-L-elsbetiae_contig15322:3452..37861691682998.3663146-UTR-L-elsbetiae_contig15322:3452..3786Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15322 3453..3786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.6173632-CDS-L-elsbetiae_contig15322:3786..42151622815624.6173632-CDS-L-elsbetiae_contig15322:3786..4215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15322 3787..4215 +
1691682998.3787906-CDS-L-elsbetiae_contig15322:3786..42151691682998.3787906-CDS-L-elsbetiae_contig15322:3786..4215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15322 3787..4215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15322.3778.1prot_L-elsbetiae_contig15322.3778.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15322 3787..4215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15322.3778.1

>prot_L-elsbetiae_contig15322.3778.1 ID=prot_L-elsbetiae_contig15322.3778.1|Name=mRNA_L-elsbetiae_contig15322.3778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MERGYGTCVVVPAVQHMSSAAVESVPTAAVHAAELSLAVESQQDPVSVSQ
KVVVQPPEELVLPVEPHVLGLLDDQCSGNGDELYARDTVVSVHRGGDVVE
LEVESVVFESDSQHAEGDRSNNSSCSGSGNEGGDGSDGDEGLG
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mRNA from alignment at L-elsbetiae_contig15322:3453..4215+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15322.3778.1 ID=mRNA_L-elsbetiae_contig15322.3778.1|Name=mRNA_L-elsbetiae_contig15322.3778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=763bp|location=Sequence derived from alignment at L-elsbetiae_contig15322:3453..4215+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGTGAGGTACTGTCAGTCAGAAGGCAGTTTTTTAGGGGGGAGGCGGC
CAAGCAGCCGCAAACAAGTAATTTTATCAAAGAGATGGAGAGAAGAAACG
CAAACGCTGGTACCTGGGCACGTTTGAATCCTACGCAACGAACGGGAGCA
CTGCTTGGAAGGCCCTTATGTTACCACTACACCACAAGCGGCGTCGCAGC
AGCAAGCAGTACCACTCCTGATACAACCGACGTGGCAGAAAGTGCAGCAG
CGTACGCACGCCGGGCCCATCACCGCGAACTGGAGTAAGGCGTACAGGCG
CGACACATACACTGCTGAGTCCGAGTTGGGTCGCATGGAGCGAGGCTATG
GTACGTGTGTAGTTGTGCCTGCTGTTCAACACATGTCATCTGCCGCGGTC
GAGTCGGTGCCGACCGCGGCGGTACATGCGGCGGAATTATCACTTGCGGT
GGAATCGCAGCAAGATCCTGTGTCGGTGTCTCAGAAAGTGGTGGTGCAGC
CGCCGGAGGAGTTGGTCTTGCCGGTGGAACCTCACGTTTTGGGACTACTG
GATGACCAGTGCAGCGGCAACGGCGATGAGCTGTATGCTCGCGACACCGT
GGTGTCTGTTCACCGCGGAGGCGACGTTGTCGAGCTGGAGGTGGAATCTG
TCGTTTTCGAGAGCGACAGCCAGCATGCTGAGGGGGACAGAAGCAACAAC
AGCAGCTGCAGCGGCAGTGGCAATGAGGGTGGTGATGGGAGTGACGGAGA
TGAGGGTTTGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15322:3453..4215+

>mRNA_L-elsbetiae_contig15322.3778.1 ID=mRNA_L-elsbetiae_contig15322.3778.1|Name=mRNA_L-elsbetiae_contig15322.3778.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig15322:3453..4215+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCGAGGCTATGGTACGTGTGTAGTTGTGCCTGCTGTTCAACACAT
GTCATCTGCCGCGGTCGAGTCGGTGCCGACCGCGGCGGTACATGCGGCGG
AATTATCACTTGCGGTGGAATCGCAGCAAGATCCTGTGTCGGTGTCTCAG
AAAGTGGTGGTGCAGCCGCCGGAGGAGTTGGTCTTGCCGGTGGAACCTCA
CGTTTTGGGACTACTGGATGACCAGTGCAGCGGCAACGGCGATGAGCTGT
ATGCTCGCGACACCGTGGTGTCTGTTCACCGCGGAGGCGACGTTGTCGAG
CTGGAGGTGGAATCTGTCGTTTTCGAGAGCGACAGCCAGCATGCTGAGGG
GGACAGAAGCAACAACAGCAGCTGCAGCGGCAGTGGCAATGAGGGTGGTG
ATGGGAGTGACGGAGATGAGGGTTTGGGTATGGAGCGAGGCTATGGTACG
TGTGTAGTTGTGCCTGCTGTTCAACACATGTCATCTGCCGCGGTCGAGTC
GGTGCCGACCGCGGCGGTACATGCGGCGGAATTATCACTTGCGGTGGAAT
CGCAGCAAGATCCTGTGTCGGTGTCTCAGAAAGTGGTGGTGCAGCCGCCG
GAGGAGTTGGTCTTGCCGGTGGAACCTCACGTTTTGGGACTACTGGATGA
CCAGTGCAGCGGCAACGGCGATGAGCTGTATGCTCGCGACACCGTGGTGT
CTGTTCACCGCGGAGGCGACGTTGTCGAGCTGGAGGTGGAATCTGTCGTT
TTCGAGAGCGACAGCCAGCATGCTGAGGGGGACAGAAGCAACAACAGCAG
CTGCAGCGGCAGTGGCAATGAGGGTGGTGATGGGAGTGACGGAGATGAGG
GTTTGGGT
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