mRNA_L-elsbetiae_contig15322.3777.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15322.3777.1
Unique NamemRNA_L-elsbetiae_contig15322.3777.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15322.3777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15322contigL-elsbetiae_contig15322:198..605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size398
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15322.3777.1prot_L-elsbetiae_contig15322.3777.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15322 341..575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.538968-UTR-L-elsbetiae_contig15322:197..3401622815624.538968-UTR-L-elsbetiae_contig15322:197..340Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15322 198..340 +
1691682998.329876-UTR-L-elsbetiae_contig15322:197..3401691682998.329876-UTR-L-elsbetiae_contig15322:197..340Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15322 198..340 +
1622815624.5698438-UTR-L-elsbetiae_contig15322:575..6051622815624.5698438-UTR-L-elsbetiae_contig15322:575..605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15322 576..605 +
1691682998.3578298-UTR-L-elsbetiae_contig15322:575..6051691682998.3578298-UTR-L-elsbetiae_contig15322:575..605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15322 576..605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.5485473-CDS-L-elsbetiae_contig15322:340..4121622815624.5485473-CDS-L-elsbetiae_contig15322:340..412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15322 341..412 +
1691682998.3417094-CDS-L-elsbetiae_contig15322:340..4121691682998.3417094-CDS-L-elsbetiae_contig15322:340..412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15322 341..412 +
1622815624.557818-CDS-L-elsbetiae_contig15322:422..5751622815624.557818-CDS-L-elsbetiae_contig15322:422..575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15322 423..575 +
1691682998.3497481-CDS-L-elsbetiae_contig15322:422..5751691682998.3497481-CDS-L-elsbetiae_contig15322:422..575Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15322 423..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15322.3777.1

>prot_L-elsbetiae_contig15322.3777.1 ID=prot_L-elsbetiae_contig15322.3777.1|Name=mRNA_L-elsbetiae_contig15322.3777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MDHQQDGLEIESAFHQRSSWSGGGSIEMYLLCVCVFRRAGLCRWNTKVSE
KLQTLLVLFCFLGELSFLFGRQAW*
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mRNA from alignment at L-elsbetiae_contig15322:198..605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15322.3777.1 ID=mRNA_L-elsbetiae_contig15322.3777.1|Name=mRNA_L-elsbetiae_contig15322.3777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig15322:198..605+ (Laminarionema elsbetiae ELsaHSoW15)
AAGTCGCGTGGAGTTGGCGCGCAACCCATCAGCTGGAAGTGGGTGGTGGG
ACGGGGCACAGCGGATTCGCAGTGTCATCATTACGAAGTCGCGCGGAGCA
ATTGCCGCGCGCACTCCATCGGCAGGAAGCGAACAGTGGAGACATGGATC
ATCAGCAGGATGGTTTGGAAATCGAGAGCGCGTTTCACCAACGCAGCAGC
TGGAGCGGCGGTGGAGTATTGAAAGAGTATTGAAATGTATTTGCTTTGTG
TTTGTGTTTTTCGTCGTGCAGGACTTTGTCGCTGGAATACGAAAGTAAGC
GAGAAATTGCAGACGCTCTTGGTTTTGTTTTGTTTTCTTGGTGAACTTTC
TTTCTTGTTTGGTCGCCAAGCGTGGTAGATTTAGCACTTGTGTTCGTGAT
GCACCCAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15322:198..605+

>mRNA_L-elsbetiae_contig15322.3777.1 ID=mRNA_L-elsbetiae_contig15322.3777.1|Name=mRNA_L-elsbetiae_contig15322.3777.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig15322:198..605+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCATCAGCAGGATGGTTTGGAAATCGAGAGCGCGTTTCACCAACG
CAGCAGCTGGAGCGGCGGTGGAATGGATCATCAGCAGGATGGTTTGGAAA
TCGAGAGCGCGTTTCACCAACGCAGCAGCTGGAGCGGCGGTGGAAGTATT
GAAATGTATTTGCTTTGTGTTTGTGTTTTTCGTCGTGCAGGACTTTGTCG
CTGGAATACGAAAGTAAGCGAGAAATTGCAGACGCTCTTGGTTTTGTTTT
GTTTTCTTGGTGAACTTTCTTTCTTGTTTGGTCGCCAAGCGTGGTAGAGT
ATTGAAATGTATTTGCTTTGTGTTTGTGTTTTTCGTCGTGCAGGACTTTG
TCGCTGGAATACGAAAGTAAGCGAGAAATTGCAGACGCTCTTGGTTTTGT
TTTGTTTTCTTGGTGAACTTTCTTTCTTGTTTGGTCGCCAAGCGTGGTAG
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