mRNA_L-elsbetiae_contig15320.3776.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15320.3776.1
Unique NamemRNA_L-elsbetiae_contig15320.3776.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15320.3776.1 vs. uniprot
Match: A0A6H5JTZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ9_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.700e-7
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:  181 SPAFSTISSREQAERDRERLAAISS-GDTGYRRSAWGV 291
            SP FSTISSREQAERDRERLAA++  GD GYRRS+WGV
Sbjct:  759 SPTFSTISSREQAERDRERLAAMNGRGDGGYRRSSWGV 796
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15320.3776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTZ9_9PHAE3.700e-781.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15320contigL-elsbetiae_contig15320:2205..4111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size439
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15320.3776.1prot_L-elsbetiae_contig15320.3776.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15320 2205..4111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.470321-CDS-L-elsbetiae_contig15320:2204..23891622815624.470321-CDS-L-elsbetiae_contig15320:2204..2389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15320 2205..2389 -
1691682998.2994041-CDS-L-elsbetiae_contig15320:2204..23891691682998.2994041-CDS-L-elsbetiae_contig15320:2204..2389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15320 2205..2389 -
1622815624.484806-CDS-L-elsbetiae_contig15320:3490..36311622815624.484806-CDS-L-elsbetiae_contig15320:3490..3631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15320 3491..3631 -
1691682998.309244-CDS-L-elsbetiae_contig15320:3490..36311691682998.309244-CDS-L-elsbetiae_contig15320:3490..3631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15320 3491..3631 -
1622815624.5007432-CDS-L-elsbetiae_contig15320:3999..41111622815624.5007432-CDS-L-elsbetiae_contig15320:3999..4111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15320 4000..4111 -
1691682998.3192348-CDS-L-elsbetiae_contig15320:3999..41111691682998.3192348-CDS-L-elsbetiae_contig15320:3999..4111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15320 4000..4111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15320.3776.1

>prot_L-elsbetiae_contig15320.3776.1 ID=prot_L-elsbetiae_contig15320.3776.1|Name=mRNA_L-elsbetiae_contig15320.3776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
SGGGANVGSRLIDAMGGGGGGGDSATSDTVGDGEQVVGGTPLSGEAYLSP
PPTGTTEPAASPAFSTISSREQAERDRERLAAISSGDTGYRRSAWGVVAA
VPPSSNTTNNSGVTGTPGGYGTDEGYFNNGRLGRRGRSSRGGSRAS
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mRNA from alignment at L-elsbetiae_contig15320:2205..4111-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15320.3776.1 ID=mRNA_L-elsbetiae_contig15320.3776.1|Name=mRNA_L-elsbetiae_contig15320.3776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1907bp|location=Sequence derived from alignment at L-elsbetiae_contig15320:2205..4111- (Laminarionema elsbetiae ELsaHSoW15)
TCGGGCGGCGGCGCCAACGTTGGTTCTCGCTTGATAGATGCCATGGGAGG
AGGAGGAGGAGGAGGAGATTCGGCCACATCGGACACTGTTGGCGATGGAG
AGCAAGTAGTCGGTGAGTCATCAGCACGGCATACAAACGATGCGGGAAAC
GATGACGACCACTAACTGGGCTAAGATTCGACGAACGGGGTTTGCCAGTC
AGCCGCCTGTGCGTGTTCGCCGGCTGTAGTCCACGGGAGAAGCTGCGATA
AAAAATAGGCAGCTTTCATTACCCGGGGGCTGTTATTTGTCGTCTTTTTA
CTTGTCCTTGGGAGCAGCGCTCTTCGTGTTCTGGTTTTCTCGACTTGATG
ATGCCCTCGCTGCGGCCTAGGGCAGCAAAAGGCCCGGTAGAAGGAGAGAC
TGCGTGCCTCGAACATTATCACCCACCAGTACATACACGTCTTCACCCAT
TGGCCGTAATCCCCTGACCCCAACCCTCAGGCGGCACGCCCTTGAGCGGG
GAGGCTTACCTCAGCCCTCCTCCTACCGGCACGACTGAACCAGCAGCGTC
GCCGGCGTTTTCTACGATCTCCAGCAGGGAGCAGGCGGAGCGGGATCGGG
AGCGCCTTGCCGCAATATCTAGTGAGTGCGTGTCTGTCTGCCCGCTTTTA
GTGGTGTTTGCCGTTGATGTTGACAGCCCCATGACAGTCCCGTTGGAGCA
AGCGGGGCGGGATCAGGAGCGTCTTGCCGTAATAGACAATGGCTGGTGAG
TCCGTGTCTGCCCGCTTTTAGTGGTGGTTGTTGTTGCCGTGGTTGACAGT
TCCGTAACAGTCCTGTTGCAGTCCCGTGACAGTCCCGTGACAGTCCCGTG
ACAGTACCGTGACAGTCCCGTTGCAGGCGGGGCGGGATCGAGAGCGCCTT
GCCGCAATAACTGGTAAGTGCGTGTCTGCCCGCTTTTGTGGTTGTTGTTG
TTGTGGTTGTTGTTGACAGTCCCGTGACAATCCCGTTGTTGGGGATCAGG
AGCGCTGGCGTACGCACGTCTCTCTCTTTCCAACAAAAAAAAGGTCTACG
TCCGCCCACTCTCTCCTCACTTCCGCTTATTATTTCGTCCCGTTTTCGTT
GTGCCGGGATGGCACGGAAATAATCGTACTTCGAAGACTAGATAGAGATG
AAGCATGCATGTACATTGCAGATGTAAATGCGTGTATTGTTGACTGAAGT
GTGCTGCGATGAAGTGCCACAACGCACGGCAAGCCCGCGGAACAGGGACC
AGCAGCAACAGTCAGTTAGTTGCTCGTGAACCGGTCGTCCCAACTAATTC
TCCTGGGCTTGGGAAGAAGTTTTTCGGCCGGGTTTCATCGCAATTGCTCC
GCTGGACTGGTGTTTACATATTCATACATATCTGGGACCTGTCTTTGGTC
GAATGGCCAGCAGATGAAACACCATTTGAAGGCTACAGTTAGTAACAACA
ACATCTCCGTCGAACCTCTCCTCAAGGAGGTGCTATTGGTATGTCCTGCA
GGCCCTCTCGGACAATAAAACTATCGAAAATAAACAGCAACCTTCGCAGA
TTTTTACTGGAAGAAATCATTATGGGATAAAGTATGGAAATGGTTGGGGG
GTCGGTTTGGAGTTAGGGTTACGGTTACGGAACCCCTGTCTATTATTTTC
CATATAGACAGGAATGACAGGAATCCTTCGCGAAGGCGATCCAAAATAAA
ACCTCACCCGCAACAAAAACAGGCGGGGACACCGGCTACCGGCGGTCGGC
TTGGGGGGTCGTCGCCGCCGTACCGCCGAGCTCCAACACCACCAACAACA
GCGGCGTCACGGGCACCCCGGGGGGCTACGGGACCGACGAGGGGTACTTC
AACAATGGCAGGCTTGGGCGGCGGGGTCGCTCGAGCCGCGGCGGAAGCAG
GGCGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15320:2205..4111-

>mRNA_L-elsbetiae_contig15320.3776.1 ID=mRNA_L-elsbetiae_contig15320.3776.1|Name=mRNA_L-elsbetiae_contig15320.3776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig15320:2205..4111- (Laminarionema elsbetiae ELsaHSoW15)
TCGGGCGGCGGCGCCAACGTTGGTTCTCGCTTGATAGATGCCATGGGAGG
AGGAGGAGGAGGAGGAGATTCGGCCACATCGGACACTGTTGGCGATGGAG
AGCAAGTAGTCGTCGGGCGGCGGCGCCAACGTTGGTTCTCGCTTGATAGA
TGCCATGGGAGGAGGAGGAGGAGGAGGAGATTCGGCCACATCGGACACTG
TTGGCGATGGAGAGCAAGTAGTCGGCGGCACGCCCTTGAGCGGGGAGGCT
TACCTCAGCCCTCCTCCTACCGGCACGACTGAACCAGCAGCGTCGCCGGC
GTTTTCTACGATCTCCAGCAGGGAGCAGGCGGAGCGGGATCGGGAGCGCC
TTGCCGCAATATCTAGCGGCACGCCCTTGAGCGGGGAGGCTTACCTCAGC
CCTCCTCCTACCGGCACGACTGAACCAGCAGCGTCGCCGGCGTTTTCTAC
GATCTCCAGCAGGGAGCAGGCGGAGCGGGATCGGGAGCGCCTTGCCGCAA
TATCTAGCGGGGACACCGGCTACCGGCGGTCGGCTTGGGGGGTCGTCGCC
GCCGTACCGCCGAGCTCCAACACCACCAACAACAGCGGCGTCACGGGCAC
CCCGGGGGGCTACGGGACCGACGAGGGGTACTTCAACAATGGCAGGCTTG
GGCGGCGGGGTCGCTCGAGCCGCGGCGGAAGCAGGGCGAGCGCGGGGACA
CCGGCTACCGGCGGTCGGCTTGGGGGGTCGTCGCCGCCGTACCGCCGAGC
TCCAACACCACCAACAACAGCGGCGTCACGGGCACCCCGGGGGGCTACGG
GACCGACGAGGGGTACTTCAACAATGGCAGGCTTGGGCGGCGGGGTCGCT
CGAGCCGCGGCGGAAGCAGGGCGAGC
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