mRNA_L-elsbetiae_contig1532.3774.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1532.3774.1
Unique NamemRNA_L-elsbetiae_contig1532.3774.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1532.3774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1532contigL-elsbetiae_contig1532:12798..13181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size384
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1532.3774.1prot_L-elsbetiae_contig1532.3774.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1532 12809..13120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.2196987-UTR-L-elsbetiae_contig1532:12797..128081622815624.2196987-UTR-L-elsbetiae_contig1532:12797..12808Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1532 12798..12808 +
1691682998.1465716-UTR-L-elsbetiae_contig1532:12797..128081691682998.1465716-UTR-L-elsbetiae_contig1532:12797..12808Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1532 12798..12808 +
1622815624.24913-UTR-L-elsbetiae_contig1532:13120..131811622815624.24913-UTR-L-elsbetiae_contig1532:13120..13181Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1532 13121..13181 +
1691682998.1636055-UTR-L-elsbetiae_contig1532:13120..131811691682998.1636055-UTR-L-elsbetiae_contig1532:13120..13181Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1532 13121..13181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.2351518-CDS-L-elsbetiae_contig1532:12808..131201622815624.2351518-CDS-L-elsbetiae_contig1532:12808..13120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1532 12809..13120 +
1691682998.1554012-CDS-L-elsbetiae_contig1532:12808..131201691682998.1554012-CDS-L-elsbetiae_contig1532:12808..13120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1532 12809..13120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1532.3774.1

>prot_L-elsbetiae_contig1532.3774.1 ID=prot_L-elsbetiae_contig1532.3774.1|Name=mRNA_L-elsbetiae_contig1532.3774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MVVVGLWFYCLFGGGRQRKNMVLGEKCRHWVGNSELGDSIYPSYLCYGLY
LLVFQSAWWLHVFNGICGQWRGFTLHHTCMVSSRLLELKFRPWLGFLRKD
LAR*
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mRNA from alignment at L-elsbetiae_contig1532:12798..13181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1532.3774.1 ID=mRNA_L-elsbetiae_contig1532.3774.1|Name=mRNA_L-elsbetiae_contig1532.3774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig1532:12798..13181+ (Laminarionema elsbetiae ELsaHSoW15)
ATATTTTGGTGATGGTTGTGGTGGGTTTGTGGTTTTATTGTTTATTTGGT
GGCGGTAGGCAACGCAAAAACATGGTCTTAGGGGAAAAATGCAGACACTG
GGTTGGAAATAGCGAGCTGGGGGATAGCATTTACCCATCATATTTATGTT
ATGGACTTTATTTACTTGTATTTCAATCAGCATGGTGGTTACACGTTTTC
AACGGGATCTGCGGACAATGGAGAGGTTTCACCCTCCACCACACATGTAT
GGTATCGTCCCGCTTATTGGAACTGAAATTTCGGCCGTGGCTGGGTTTCT
TGCGCAAGGATTTAGCGCGGTAATCGCCAAGGAGCCCCCGTACCTTCTCA
TTATTTTCTGATGCCCCTGTGTACAAGTCTCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1532:12798..13181+

>mRNA_L-elsbetiae_contig1532.3774.1 ID=mRNA_L-elsbetiae_contig1532.3774.1|Name=mRNA_L-elsbetiae_contig1532.3774.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1532:12798..13181+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGTGGTGGGTTTGTGGTTTTATTGTTTATTTGGTGGCGGTAGGCA
ACGCAAAAACATGGTCTTAGGGGAAAAATGCAGACACTGGGTTGGAAATA
GCGAGCTGGGGGATAGCATTTACCCATCATATTTATGTTATGGACTTTAT
TTACTTGTATTTCAATCAGCATGGTGGTTACACGTTTTCAACGGGATCTG
CGGACAATGGAGAGGTTTCACCCTCCACCACACATGTATGGTATCGTCCC
GCTTATTGGAACTGAAATTTCGGCCGTGGCTGGGTTTCTTGCGCAAGGAT
TTAGCGCGGTAAATGGTTGTGGTGGGTTTGTGGTTTTATTGTTTATTTGG
TGGCGGTAGGCAACGCAAAAACATGGTCTTAGGGGAAAAATGCAGACACT
GGGTTGGAAATAGCGAGCTGGGGGATAGCATTTACCCATCATATTTATGT
TATGGACTTTATTTACTTGTATTTCAATCAGCATGGTGGTTACACGTTTT
CAACGGGATCTGCGGACAATGGAGAGGTTTCACCCTCCACCACACATGTA
TGGTATCGTCCCGCTTATTGGAACTGAAATTTCGGCCGTGGCTGGGTTTC
TTGCGCAAGGATTTAGCGCGGTAA
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