mRNA_L-elsbetiae_contig15319.3772.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15319.3772.1
Unique NamemRNA_L-elsbetiae_contig15319.3772.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15319.3772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15319contigL-elsbetiae_contig15319:987..1578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size592
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15319.3772.1prot_L-elsbetiae_contig15319.3772.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15319 1001..1360 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.1604238-UTR-L-elsbetiae_contig15319:986..10001622815624.1604238-UTR-L-elsbetiae_contig15319:986..1000Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15319 987..1000 +
1691682998.1196976-UTR-L-elsbetiae_contig15319:986..10001691682998.1196976-UTR-L-elsbetiae_contig15319:986..1000Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15319 987..1000 +
1622815624.18465-UTR-L-elsbetiae_contig15319:1360..15781622815624.18465-UTR-L-elsbetiae_contig15319:1360..1578Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15319 1361..1578 +
1691682998.1381733-UTR-L-elsbetiae_contig15319:1360..15781691682998.1381733-UTR-L-elsbetiae_contig15319:1360..1578Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15319 1361..1578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.1707497-CDS-L-elsbetiae_contig15319:1000..13601622815624.1707497-CDS-L-elsbetiae_contig15319:1000..1360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15319 1001..1360 +
1691682998.1301053-CDS-L-elsbetiae_contig15319:1000..13601691682998.1301053-CDS-L-elsbetiae_contig15319:1000..1360Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15319 1001..1360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15319.3772.1

>prot_L-elsbetiae_contig15319.3772.1 ID=prot_L-elsbetiae_contig15319.3772.1|Name=mRNA_L-elsbetiae_contig15319.3772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MYSGEKPAVMSWCLPSSSMTGTHRTVRQAFLFNVIYESRSPRRKPDCGWM
NKRTVPQLTDAGIPATYTNVSRLRMSVLLPRPLSFACTCQCQGPSPTCTC
LWVLSNVSHLPTHADIPAI*
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mRNA from alignment at L-elsbetiae_contig15319:987..1578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15319.3772.1 ID=mRNA_L-elsbetiae_contig15319.3772.1|Name=mRNA_L-elsbetiae_contig15319.3772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=592bp|location=Sequence derived from alignment at L-elsbetiae_contig15319:987..1578+ (Laminarionema elsbetiae ELsaHSoW15)
CCAAGTCAACCAACATGTATTCCGGGGAGAAACCCGCCGTGATGTCGTGG
TGTTTGCCATCTTCTTCTATGACAGGAACACATCGCACCGTTCGCCAAGC
TTTTCTTTTCAACGTAATCTACGAGAGCCGGTCGCCTCGAAGAAAGCCAG
ACTGCGGATGGATGAATAAACGAACCGTCCCTCAACTTACCGATGCCGGT
ATCCCTGCTACATACACAAACGTCTCTCGCCTGCGCATGTCAGTGCTCTT
ACCAAGACCTTTGTCCTTCGCCTGCACATGTCAATGCCAAGGTCCCTCGC
CTACATGCACATGCCTGTGGGTCCTCTCTAACGTCTCTCACCTACCTACG
CATGCCGATATCCCTGCGATATAACGCCTCTCGCCTATGTGCGCATGTCA
GTGCCCTTACCAACGTATCTCACATATCTACCGTAGGTGACACAAGATAC
CACACCCCCTGTGCCGACTTTTAGAGCTCCATTACTCCCGAATAGGGTGC
CAGCACCAAGCGGCACATACTCGGACAGCCCTCGACTATGTAGATCTTTT
CCAACGCCACCACCCCTTTCGGCGCCGGCACTCTTCTTGCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15319:987..1578+

>mRNA_L-elsbetiae_contig15319.3772.1 ID=mRNA_L-elsbetiae_contig15319.3772.1|Name=mRNA_L-elsbetiae_contig15319.3772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig15319:987..1578+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATTCCGGGGAGAAACCCGCCGTGATGTCGTGGTGTTTGCCATCTTC
TTCTATGACAGGAACACATCGCACCGTTCGCCAAGCTTTTCTTTTCAACG
TAATCTACGAGAGCCGGTCGCCTCGAAGAAAGCCAGACTGCGGATGGATG
AATAAACGAACCGTCCCTCAACTTACCGATGCCGGTATCCCTGCTACATA
CACAAACGTCTCTCGCCTGCGCATGTCAGTGCTCTTACCAAGACCTTTGT
CCTTCGCCTGCACATGTCAATGCCAAGGTCCCTCGCCTACATGCACATGC
CTGTGGGTCCTCTCTAACGTCTCTCACCTACCTACGCATGCCGATATCCC
TGCGATATAAATGTATTCCGGGGAGAAACCCGCCGTGATGTCGTGGTGTT
TGCCATCTTCTTCTATGACAGGAACACATCGCACCGTTCGCCAAGCTTTT
CTTTTCAACGTAATCTACGAGAGCCGGTCGCCTCGAAGAAAGCCAGACTG
CGGATGGATGAATAAACGAACCGTCCCTCAACTTACCGATGCCGGTATCC
CTGCTACATACACAAACGTCTCTCGCCTGCGCATGTCAGTGCTCTTACCA
AGACCTTTGTCCTTCGCCTGCACATGTCAATGCCAAGGTCCCTCGCCTAC
ATGCACATGCCTGTGGGTCCTCTCTAACGTCTCTCACCTACCTACGCATG
CCGATATCCCTGCGATATAA
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