mRNA_L-elsbetiae_contig15316.3771.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15316.3771.1
Unique NamemRNA_L-elsbetiae_contig15316.3771.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15316.3771.1 vs. uniprot
Match: D7G7J8_ECTSI (Nucleolar complex associated 2 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7J8_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 2.990e-37
Identity = 75/97 (77.32%), Postives = 77/97 (79.38%), Query Frame = 2 
Query:    5 GGVTLTMPLLEAMRQEAFDRKSIQGVRRMIKAFRCGCHLGDEASEAKGXXXXXXXXXXXAVQQKFRIPSSEVYNELMVCSLEGLHVAFMRLLFSDRE 295
            GGV LTMPLL+AMRQEAFDR SIQGVRRMIKAFRCGCHLGDEA+E K             VQQKFRIPSSEVYNELMVCSLEGLH AFM LLF  RE
Sbjct:  203 GGVPLTMPLLKAMRQEAFDRTSIQGVRRMIKAFRCGCHLGDEAAEGKAGSGGGGS----GVQQKFRIPSSEVYNELMVCSLEGLHSAFMHLLFPGRE 295
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15316.3771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7J8_ECTSI2.990e-3777.32Nucleolar complex associated 2 homolog n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15316contigL-elsbetiae_contig15316:1148..3019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue1.3e-29
Seed eggNOG ortholog2880.D7G7J8
KEGG koko:K14833
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0030687,GO:0030689,GO:0030690,GO:0030691,GO:0031974,GO:0031981,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:1990904
EggNOG free text desc.domain, Protein
EggNOG OGsCOG5604@1,KOG2256@2759
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons3
Model size402
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15316.3771.1prot_L-elsbetiae_contig15316.3771.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15316 1170..3019 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.095687-UTR-L-elsbetiae_contig15316:1147..11691622815624.095687-UTR-L-elsbetiae_contig15316:1147..1169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15316 1148..1169 +
1691682998.06412-UTR-L-elsbetiae_contig15316:1147..11691691682998.06412-UTR-L-elsbetiae_contig15316:1147..1169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15316 1148..1169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.1060069-CDS-L-elsbetiae_contig15316:1169..12691622815624.1060069-CDS-L-elsbetiae_contig15316:1169..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15316 1170..1269 +
1691682998.0810814-CDS-L-elsbetiae_contig15316:1169..12691691682998.0810814-CDS-L-elsbetiae_contig15316:1169..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15316 1170..1269 +
1622815624.1160104-CDS-L-elsbetiae_contig15316:2375..24881622815624.1160104-CDS-L-elsbetiae_contig15316:2375..2488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15316 2376..2488 +
1691682998.0988424-CDS-L-elsbetiae_contig15316:2375..24881691682998.0988424-CDS-L-elsbetiae_contig15316:2375..2488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15316 2376..2488 +
1622815624.1266313-CDS-L-elsbetiae_contig15316:2854..30191622815624.1266313-CDS-L-elsbetiae_contig15316:2854..3019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15316 2855..3019 +
1691682998.1087322-CDS-L-elsbetiae_contig15316:2854..30191691682998.1087322-CDS-L-elsbetiae_contig15316:2854..3019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15316 2855..3019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15316.3771.1

>prot_L-elsbetiae_contig15316.3771.1 ID=prot_L-elsbetiae_contig15316.3771.1|Name=mRNA_L-elsbetiae_contig15316.3771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MPLLEAMRQEAFDRKSIQGVRRMIKAFRCGCHLGDEASEAKGGGGGGGSS
GGGAVQQKFRIPSSEVYNELMVCSLEGLHVAFMRLLFSDRELPATAAAAA
TTAATMITATASANDAGGGSKADGDA
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mRNA from alignment at L-elsbetiae_contig15316:1148..3019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15316.3771.1 ID=mRNA_L-elsbetiae_contig15316.3771.1|Name=mRNA_L-elsbetiae_contig15316.3771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1872bp|location=Sequence derived from alignment at L-elsbetiae_contig15316:1148..3019+ (Laminarionema elsbetiae ELsaHSoW15)
GGTCGGAGGCGTAACCCTCACGATGCCGCTGCTCGAGGCCATGCGCCAGG
AGGCGTTCGACCGCAAGAGCATCCAGGGCGTGAGGAGGATGATCAAGGCC
TTTCGCTGCGGCTGCCACCTTGGTGAGTTCTCATTCAGTCAGCCTCCTTC
ACAGCGTGCGTGATTTGCGCGCCTCTCTTGCGCGCCTCTCTTGTGCGGGG
GGGTTACCTCCTCTGGCGTCACGCCGAGGGAAAAAGCATGCCTGCTGCCC
TCAAAAGCCCTTTGTGCGTGTGTGTGTGTGTTTTTTTTGTTTCACGCAGG
AAACATAAACATGCATTCGTATACAAAAAGCGCACCGAATACCTATGAAT
CGTTGTTTACCGCAGCTCGCATGAGGAAGCCACAGCGCCGGCGGTGACTT
GAAGCGGTGTGAAGTCACTATATAGGTCGGTACCAGGCAAGGCAGCCGAG
CGTGCCTACATTAGGTCGGTCGCACTTCTGAAGCCGTCGAAGGGGTACAG
CACTAGGCCACCCGTAATTCTTCCTTGTTTATCCGGGTGCTTTAGCGACT
GTGGCATTCTAGAGCGGAGGGGGGGGGGGCAGGCAGAGTATCCTGTGCGA
GTCGCAGAAGACAGCACTACCCTCGATAGTGCGTACGGTCTCTCTGGTGC
CGGCTCGGCAGGTATGTGAAGCACTCACGGGGCTCCTTGGCGTAAGATGT
CCACCGACCACGGGGGCCCCCTCGGCTTTCGCTGCAATGCTGCCGCGGAA
TTATCTGCTTCAAAAACGTCTGTAGGGTGGGGCCGCGCCCTATCGTGCTG
TTTGTTGGCTCCGGGCTGTCTTTGCAGCCGAGTTCAACATCTCCCCTGCA
AAGAATTGCGAGGTCGGCCAACAAGTATTTCGGCGGGTAGATGCCCGCCA
TGATGCTGTAATGTTGTCATCTACTTCAAACAAATAGGAAAACATCGCAC
TGTTTTACTAAATCAAAATGCTGGTTTAGCATACGTGGGTTACTGACCAT
AAACCGAGCGGCGGAGCCCCGTGAGTGCGGCTGTTAAAACCCGTACGTAA
CCGTCGTAACCGTCGTCACCGTCGTCGCCGTCACCGAATCGTTTCCATCT
CGAGTAACATGTATATCATATCGAATATTTTCTTGCTTGGCTGCTTGGCT
GCTTGGCTGCTTGGCTGCTTACCTGCCCGCTCCTCCGTGTTACCGTCGTT
GTCGTCGTCGTCGTCGTCGTCGTTGCAGGTGACGAGGCGTCTGAAGCGAA
AGGCGGCGGGGGCGGCGGCGGCAGCAGCGGCGGCGGCGCGGTCCAGCAGA
AGTTCCGCATCCCCAGCAGCGAGGTTTACAACGAGCTCATGGTGAGCCGC
TCGTCGCCCCCCCCCGCCCCTAATCCGTCTCGAACCGTCACCCCCCCCCA
TCCGCTCCTGCCGTCTTGTGCCGTCCCAGCTCTTGGAACTGCGGGATAGA
GCCCGGGGGGCTGTTCCGGCGTTGTGTGGGTATACATGGGGATACTTACG
GCGGGGACCAAGGCCGTGTTTTTGTCACCACGGGTCACGCGTTGGCACGA
GCACACTTTACTCGCCTCTCCCTGCGCGTGCCGCCGCCAAACGGGCTGTG
TCCGTCGCTGAATCGATCGAACCAACCTCCACGTAATGTTCGCCTTGTGC
CGCCTGCCCCCCCCTGTTTGGGTTGGCCGCCACGACTGCACCCCCGGCGG
TGCTCAGGTCTGTTCCCTCGAGGGACTCCACGTCGCTTTCATGCGTCTCC
TCTTCTCCGACAGAGAGCTGCCGGCGACCGCCGCCGCCGCCGCGACCACC
GCCGCGACAATGATCACGGCAACGGCTTCTGCGAACGATGCCGGCGGTGG
TAGCAAGGCGGACGGCGACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15316:1148..3019+

>mRNA_L-elsbetiae_contig15316.3771.1 ID=mRNA_L-elsbetiae_contig15316.3771.1|Name=mRNA_L-elsbetiae_contig15316.3771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig15316:1148..3019+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCTGCTCGAGGCCATGCGCCAGGAGGCGTTCGACCGCAAGAGCAT
CCAGGGCGTGAGGAGGATGATCAAGGCCTTTCGCTGCGGCTGCCACCTTG
ATGCCGCTGCTCGAGGCCATGCGCCAGGAGGCGTTCGACCGCAAGAGCAT
CCAGGGCGTGAGGAGGATGATCAAGGCCTTTCGCTGCGGCTGCCACCTTG
GTGACGAGGCGTCTGAAGCGAAAGGCGGCGGGGGCGGCGGCGGCAGCAGC
GGCGGCGGCGCGGTCCAGCAGAAGTTCCGCATCCCCAGCAGCGAGGTTTA
CAACGAGCTCATGGTGACGAGGCGTCTGAAGCGAAAGGCGGCGGGGGCGG
CGGCGGCAGCAGCGGCGGCGGCGCGGTCCAGCAGAAGTTCCGCATCCCCA
GCAGCGAGGTTTACAACGAGCTCATGGTCTGTTCCCTCGAGGGACTCCAC
GTCGCTTTCATGCGTCTCCTCTTCTCCGACAGAGAGCTGCCGGCGACCGC
CGCCGCCGCCGCGACCACCGCCGCGACAATGATCACGGCAACGGCTTCTG
CGAACGATGCCGGCGGTGGTAGCAAGGCGGACGGCGACGCCGTCTGTTCC
CTCGAGGGACTCCACGTCGCTTTCATGCGTCTCCTCTTCTCCGACAGAGA
GCTGCCGGCGACCGCCGCCGCCGCCGCGACCACCGCCGCGACAATGATCA
CGGCAACGGCTTCTGCGAACGATGCCGGCGGTGGTAGCAAGGCGGACGGC
GACGCC
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