mRNA_L-elsbetiae_contig15311.3770.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15311.3770.1
Unique NamemRNA_L-elsbetiae_contig15311.3770.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 1.430e-65
Identity = 109/113 (96.46%), Postives = 112/113 (99.12%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQV 339
            YFEEALKMRCLLEEFRGGT RRPAV+VGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKAS+GINLSEDIFAGYNGTIRGGQ+
Sbjct: 1500 YFEEALKMRCLLEEFRGGTARRPAVVVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASRGINLSEDIFAGYNGTIRGGQI 1612          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 191 bits (486), Expect = 3.990e-54
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQV 339
            YFEEA+KMRCLL+EF    +  P  IVGFREHIFTGSVSSLANYMALQELSFVT+GQRVL++PLR+RMHYGHPDLFDKVFFMT GG+SKASKGINLSEDIFAGYN TIRGGQV
Sbjct: 1211 YFEEAIKMRCLLQEFLRKRDP-PTTIVGFREHIFTGSVSSLANYMALQELSFVTIGQRVLDDPLRIRMHYGHPDLFDKVFFMTRGGMSKASKGINLSEDIFAGYNNTIRGGQV 1322          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.240e-52
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQV 339
            YFEEALKMR LL+EF   T   P  I+GFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLR R+HYGHPD+FDK+FFMT GG+SKASKGINLSEDIFAG+N  +RGG V
Sbjct:  987 YFEEALKMRNLLQEFHKSTRDVPITILGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRQRLHYGHPDIFDKLFFMTRGGISKASKGINLSEDIFAGFNNQLRGGNV 1099          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A7S2X7C3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X7C3_9EUKA)

HSP 1 Score: 168 bits (426), Expect = 3.590e-51
Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRG 330
            YFEEA+KMR LLEEF     R+   IVGFREHIFTG +SS+ANYMA+QE  FVTLGQRVL++PL++R+HYGHPDLFDK+F+MT GG+SKASKGINLSEDIFAG+N  +RG
Sbjct:   63 YFEEAVKMRNLLEEFDRDDSRKHTTIVGFREHIFTGGLSSVANYMAMQEGCFVTLGQRVLHDPLKIRLHYGHPDLFDKLFYMTRGGISKASKGINLSEDIFAGFNTVLRG 172          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A3P3YPK2_PLABS (1,3-beta-glucan synthase n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YPK2_PLABS)

HSP 1 Score: 178 bits (452), Expect = 1.520e-49
Identity = 87/113 (76.99%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQV 339
            YFEEALKMR LL+EF GG+  RP  IVGF EHIFT  +SS+ANYMALQE  FVTLGQRVL NPLR+RMHYGHPDLFDK F +T GG+SKAS+GINLSEDIFAGYN T+RGG V
Sbjct: 1434 YFEEALKMRNLLQEFDGGSPDRPVTIVGFAEHIFTSRLSSIANYMALQEGVFVTLGQRVLANPLRIRMHYGHPDLFDKTFHLTRGGISKASRGINLSEDIFAGYNTTLRGGSV 1546          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.080e-49
Identity = 91/115 (79.13%), Postives = 98/115 (85.22%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGG--TERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQV 339
            +FEEALKMR LL+EF  G  +E  P  IVGFREHIFTGSVSSLANYMALQE SFVTLGQRVLN PL  R+HYGHPD+FDK+FFMT GGVSKASKGINLSEDIFAGYN  +RGG V
Sbjct: 1431 FFEEALKMRNLLQEFDHGKGSEGMPTTIVGFREHIFTGSVSSLANYMALQETSFVTLGQRVLNKPLCSRLHYGHPDVFDKLFFMTRGGVSKASKGINLSEDIFAGYNNLVRGGGV 1545          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A6A5A3K6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A3K6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.580e-49
Identity = 85/109 (77.98%), Postives = 90/109 (82.57%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIR 327
            Y EEALKMR LLEEF  G   RP  IVG  EHIFTGS+SSLANYMALQE SFVTLGQR L  PLRVRMHYGHPD+F+K+FFMT GG SKASKGINLSEDIFAGYN  +R
Sbjct:  211 YLEEALKMRNLLEEFSAGN--RPCTIVGLPEHIFTGSISSLANYMALQETSFVTLGQRTLTRPLRVRMHYGHPDVFNKLFFMTRGGFSKASKGINLSEDIFAGYNNCLR 317          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A5D6XLF6_9STRA (1,3-beta-glucan synthase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLF6_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.880e-49
Identity = 87/113 (76.99%), Postives = 95/113 (84.07%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQV 339
            Y EEALKMR +LEEF  GT  RP  IVG  EHIFTGSVSSLANYMALQE SFVTLGQR L  PLRVR+HYGHPD+F+K+FF+T GG+SKASKGINLSEDIFAGYN  +RGG V
Sbjct: 1923 YLEEALKMRNMLEEFDSGTRDRPTTIVGLPEHIFTGSVSSLANYMALQETSFVTLGQRTLARPLRVRLHYGHPDVFNKLFFITRGGISKASKGINLSEDIFAGYNNCLRGGTV 2035          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA)

HSP 1 Score: 171 bits (434), Expect = 4.220e-49
Identity = 89/117 (76.07%), Postives = 97/117 (82.91%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEF----RGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQV 339
            YFEEA+KMR  L+EF    RG     P  I+G REHIFTGSVSSLANYMALQE SFVTLGQRVL NPL +R+HYGHPD+FDK+FFMT GGVSKASKGINLSEDIFAGY+  IRGGQV
Sbjct:    1 YFEEAMKMRNALQEFCPSKRGAL---PMTILGLREHIFTGSVSSLANYMALQETSFVTLGQRVLTNPLCMRLHYGHPDVFDKLFFMTRGGVSKASKGINLSEDIFAGYSNVIRGGQV 114          
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Match: A0A0H5RK18_9EUKA (1,3-beta-glucan synthase n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RK18_9EUKA)

HSP 1 Score: 176 bits (446), Expect = 9.780e-49
Identity = 86/113 (76.11%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    1 YFEEALKMRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQRVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGTIRGGQV 339
            YFEEALKMR +L+EF  GT  RP  IVGF EHIFT  +SS+ANYMALQE  FVTLGQRVL NPLR+RMHYGHPD+FDK+F +T GGVSKAS+GINLSEDIFAGYN T+RGG V
Sbjct: 1388 YFEEALKMRNMLQEFDQGTADRPITIVGFAEHIFTSRLSSIANYMALQEGVFVTLGQRVLANPLRIRMHYGHPDVFDKIFHLTRGGVSKASRGINLSEDIFAGYNTTLRGGSV 1500          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15311.3770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFR3_9PHAE1.430e-6596.461,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z4B5_9STRA3.990e-5484.071,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2UV62_9STRA2.240e-5280.53Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2X7C3_9EUKA3.590e-5172.73Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A3P3YPK2_PLABS1.520e-4976.991,3-beta-glucan synthase n=2 Tax=Plasmodiophora br... [more]
A0A7S2QVX6_9STRA2.080e-4979.131,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
A0A6A5A3K6_9STRA3.580e-4977.98Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A5D6XLF6_9STRA3.880e-4976.991,3-beta-glucan synthase n=1 Tax=Pythium brassicum... [more]
A0A7S0GHQ8_9STRA4.220e-4976.07Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A0H5RK18_9EUKA9.780e-4976.111,3-beta-glucan synthase n=1 Tax=Spongospora subte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15311contigL-elsbetiae_contig15311:2633..3440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.6
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog42099.EPrPV00000018424
KEGG koko:K11000
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Callose synthase. Source PGD
EggNOG OGs1MEIK@121069,KOG0916@1,KOG0916@2759
COG Functional cat.M
CAZyGT48
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons2
Model size366
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15311.3770.1prot_L-elsbetiae_contig15311.3770.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15311 2633..3419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.040927-CDS-L-elsbetiae_contig15311:2632..27641622815624.040927-CDS-L-elsbetiae_contig15311:2632..2764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15311 2633..2764 -
1691682998.0167599-CDS-L-elsbetiae_contig15311:2632..27641691682998.0167599-CDS-L-elsbetiae_contig15311:2632..2764Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15311 2633..2764 -
1622815624.0522466-CDS-L-elsbetiae_contig15311:3206..34191622815624.0522466-CDS-L-elsbetiae_contig15311:3206..3419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15311 3207..3419 -
1691682998.0339766-CDS-L-elsbetiae_contig15311:3206..34191691682998.0339766-CDS-L-elsbetiae_contig15311:3206..3419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15311 3207..3419 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.063952-UTR-L-elsbetiae_contig15311:3419..34401622815624.063952-UTR-L-elsbetiae_contig15311:3419..3440Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15311 3420..3440 -
1691682998.053686-UTR-L-elsbetiae_contig15311:3419..34401691682998.053686-UTR-L-elsbetiae_contig15311:3419..3440Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15311 3420..3440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15311.3770.1

>prot_L-elsbetiae_contig15311.3770.1 ID=prot_L-elsbetiae_contig15311.3770.1|Name=mRNA_L-elsbetiae_contig15311.3770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MRCLLEEFRGGTERRPAVIVGFREHIFTGSVSSLANYMALQELSFVTLGQ
RVLNNPLRVRMHYGHPDLFDKVFFMTAGGVSKASKGINLSEDIFAGYNGT
IRGGQVRARNTAFSA
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mRNA from alignment at L-elsbetiae_contig15311:2633..3440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15311.3770.1 ID=mRNA_L-elsbetiae_contig15311.3770.1|Name=mRNA_L-elsbetiae_contig15311.3770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=808bp|location=Sequence derived from alignment at L-elsbetiae_contig15311:2633..3440- (Laminarionema elsbetiae ELsaHSoW15)
TACTTCGAGGAGGCCCTCAAGATGCGCTGCTTGCTGGAGGAGTTCCGGGG GGGCACCGAGCGCCGCCCGGCCGTCATCGTGGGATTCCGGGAGCACATCT TCACGGGGAGCGTGAGCTCGCTGGCCAACTACATGGCCCTGCAGGAGCTG TCGTTCGTCACGCTCGGGCAGAGGGTGCTCAACAACCCGCTCCGGGTCCG GATGCACTACGGCCACCCCGATCTCTTCGACAAGGTGTGTGGTGCTTTAC TTGAGAGGTACATAGCAATGATAAAAGAAGGCGGAGTTTGTGCCACTGCT GCTGTTTTGTGTGTAGGTGGGCTGGTCTGCCGCTGCATCTAGCACCCCGA TATTTTCGCCAAAGTGGGTGACTTACTTGAGAGCTAGCATGATAAGAGGC AGGTTTCTGCCACTACTACATACGGCGGTTGTGCGTAGGTAGGCCTGCCG CTGTGGTCTAGGGTGACCAGGGAGGCTGCTGCTGTTGTTTTTTGTTGCTG TTGTTTCTCACATTAGCCTCTCGAGTCCAAAAGATCCTTGGGGGCCCGTG GTCACGTTAGTCAAGTGTGGTGTGTCTACTGTTCCTGTGGTGCCTGCTGC CGGTCGTCGTGTCTGCCATCCCCACCCCCCTCACCATAACATTTACCATC ATTGTCACCATAACTGTCACCATCAGGTCTTTTTCATGACGGCTGGTGGG GTGAGCAAGGCGTCCAAGGGGATCAACCTCAGCGAGGACATCTTCGCGGG GTACAACGGGACCATTCGCGGGGGGCAGGTGCGCGCACGCAACACAGCAT TTTCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15311:2633..3440-

>mRNA_L-elsbetiae_contig15311.3770.1 ID=mRNA_L-elsbetiae_contig15311.3770.1|Name=mRNA_L-elsbetiae_contig15311.3770.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig15311:2633..3440- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCTGCTTGCTGGAGGAGTTCCGGGGGGGCACCGAGCGCCGCCCGGC
CGTCATCGTGGGATTCCGGGAGCACATCTTCACGGGGAGCGTGAGCTCGC
TGGCCAACTACATGGCCCTGCAGGAGCTGTCGTTCGTCACGCTCGGGCAG
AGGGTGCTCAACAACCCGCTCCGGGTCCGGATGCACTACGGCCACCCCGA
TCTCTTCGACAAGATGCGCTGCTTGCTGGAGGAGTTCCGGGGGGGCACCG
AGCGCCGCCCGGCCGTCATCGTGGGATTCCGGGAGCACATCTTCACGGGG
AGCGTGAGCTCGCTGGCCAACTACATGGCCCTGCAGGAGCTGTCGTTCGT
CACGCTCGGGCAGAGGGTGCTCAACAACCCGCTCCGGGTCCGGATGCACT
ACGGCCACCCCGATCTCTTCGACAAGGTCTTTTTCATGACGGCTGGTGGG
GTGAGCAAGGCGTCCAAGGGGATCAACCTCAGCGAGGACATCTTCGCGGG
GTACAACGGGACCATTCGCGGGGGGCAGGTGCGCGCACGCAACACAGCAT
TTTCCGCGGTCTTTTTCATGACGGCTGGTGGGGTGAGCAAGGCGTCCAAG
GGGATCAACCTCAGCGAGGACATCTTCGCGGGGTACAACGGGACCATTCG
CGGGGGGCAGGTGCGCGCACGCAACACAGCATTTTCCGCG
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