mRNA_L-elsbetiae_contig1531.3766.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1531.3766.1
Unique NamemRNA_L-elsbetiae_contig1531.3766.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1531.3766.1 vs. uniprot
Match: Q8QNN3_ESV1K (EsV-1-28 n=2 Tax=root TaxID=1 RepID=Q8QNN3_ESV1K)

HSP 1 Score: 159 bits (401), Expect = 8.740e-46
Identity = 84/198 (42.42%), Postives = 116/198 (58.59%), Query Frame = 1 
Query:    1 MARIINQNGVLEVRISMQGEESGNGVYAIDDVKAGTILPYSAVAFKESN------APEDMDRTYVIGANFYNAKGKACTFKIYSVDGKPFLEPVEPLEEFAKLGCHINEASVGKKINCILCINPSLTIGTFRESFEKQKPFTATYIVITKDLQAGTELLTSYGREYENRGYRVCKMNRKTYEALVDRAYDFIDELAQK 576
            ++ I++++G+ E R S QGE +G+GV+   DVKAGTILPY  +   +           D  RTYVI A++    G   T K  SVDG P L  ++ LE++ KL C INEAS G   NC+L  NP ++      S  K+ P    YIV+ + L  GTELLT YG+E+ +R Y  CKMNR+T+  L DRAY  +D L ++
Sbjct:    2 VSSIVDKDGIFECRKSKQGENAGSGVFCAHDVKAGTILPYYGITISDDVEVHDDIVSSDNYRTYVISADYCTKYGTRRTAKGLSVDGDPRLPRIQKLEKYKKLACQINEASEGCLPNCLLTTNPRISRADINRSLLKKVPIPIAYIVVLESLPNGTELLTFYGKEFGDRAYSSCKMNRRTHRQLADRAYAHVDALPKQ 199
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BLAST of mRNA_L-elsbetiae_contig1531.3766.1 vs. uniprot
Match: A0A6H5KKN2_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 7.820e-34
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 1 
Query:   64 SGNGVYAIDDVKAGTILPYSAVAFKESN-------APEDMDRTYVIGANFYNAKGKACTFKIYSVDGKPFLEPVEPLEEFAKLGCHINEASVGKKINCILCINPSLTIGTFRESFEKQKPFTATYIVITKDLQAGTELLTSYGREYENRGYRVCKMNRKTYEALVDRAYDFIDELAQK 576
            +G GV+ +D V+AGTILPY  V  K+ +         ++  RTYV+ A++ N  G   T + YSVDG P L  +E L+ F KL C INEAS G   NC+L  N +++    + S  +     AT+IV  +DL+ GTEL T YG EY  RGYR  KM R     ++D+AY+ + +  +K
Sbjct:  749 AGMGVFCVDSVEAGTILPYYGVTIKDDDDDDRNARCSQEGYRTYVVSADYTNRSGNQRTVEGYSVDGDPSLPVIEELDGFKKLACRINEASDGFAPNCLLVSNRAISRADIKRSLAEHSAIPATFIVTIEDLKRGTELFTCYGDEYGERGYRPSKMKRSRLRQMIDKAYEHMAKRVKK 926
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BLAST of mRNA_L-elsbetiae_contig1531.3766.1 vs. uniprot
Match: A0A835Z5X5_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5X5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 9.150e-10
Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 1 
Query:   61 ESGNGVYAIDDVKAGTILPYSAVAFKESNAPEDMDRTYVIGANFYNAKGKACTFKIYSVDGKPFLEPVEPLE----EFAKLGCHINEASVGKKINCILCINPSLTIGTFRESFEKQKPFTATYIVITKDLQAGTELLTSYGREYENRGYRVCKMNR 516
            E G GV A   +K GT+LP +AVA +E++     D +Y + + F +    A ++   +VDG  F    + L     +   L  +INEA +   +NC L   P  T      ++         ++++T+D+  G +LLT YG  Y   GY+V +  R
Sbjct:  136 EMGRGVVARCAIKKGTMLPLAAVAIREAHG---QDGSYQLDSAFISVN--AVSWDTVTVDGVVFDAHPKLLRGRVHQSWALASYINEARLNADVNCELFPAPHNTADDITTAYRMGSVILGAWMIVTRDVAEGEQLLTHYGTGYTREGYKVQRRIR 286
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1531.3766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNN3_ESV1K8.740e-4642.42EsV-1-28 n=2 Tax=root TaxID=1 RepID=Q8QNN3_ESV1K[more]
A0A6H5KKN2_9PHAE7.820e-3440.45SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z5X5_9STRA9.150e-1029.49SET domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1531contigL-elsbetiae_contig1531:17866..18447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size582
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.86746-CDS-L-elsbetiae_contig1531:17865..184471622815623.86746-CDS-L-elsbetiae_contig1531:17865..18447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1531 17866..18447 -
1691682997.922803-CDS-L-elsbetiae_contig1531:17865..184471691682997.922803-CDS-L-elsbetiae_contig1531:17865..18447Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1531 17866..18447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1531.3766.1prot_L-elsbetiae_contig1531.3766.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1531 17866..18447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1531.3766.1

>prot_L-elsbetiae_contig1531.3766.1 ID=prot_L-elsbetiae_contig1531.3766.1|Name=mRNA_L-elsbetiae_contig1531.3766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MARIINQNGVLEVRISMQGEESGNGVYAIDDVKAGTILPYSAVAFKESNA
PEDMDRTYVIGANFYNAKGKACTFKIYSVDGKPFLEPVEPLEEFAKLGCH
INEASVGKKINCILCINPSLTIGTFRESFEKQKPFTATYIVITKDLQAGT
ELLTSYGREYENRGYRVCKMNRKTYEALVDRAYDFIDELAQKK*
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mRNA from alignment at L-elsbetiae_contig1531:17866..18447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1531.3766.1 ID=mRNA_L-elsbetiae_contig1531.3766.1|Name=mRNA_L-elsbetiae_contig1531.3766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig1531:17866..18447- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACGTATCATCAATCAAAATGGTGTCTTGGAGGTCCGAATATCCAT
GCAGGGAGAGGAATCGGGCAATGGGGTGTACGCTATCGACGATGTGAAGG
CGGGAACAATTCTACCGTATTCAGCGGTTGCTTTCAAAGAATCTAATGCA
CCAGAAGACATGGACAGAACGTATGTCATAGGGGCAAATTTTTACAACGC
CAAGGGCAAAGCATGCACGTTCAAGATTTATTCCGTGGACGGGAAACCCT
TTCTCGAACCAGTCGAGCCACTAGAAGAATTCGCCAAGCTCGGGTGCCAC
ATCAACGAAGCGTCTGTGGGGAAAAAAATAAATTGCATTCTCTGCATAAA
TCCTTCTCTAACCATCGGTACGTTCAGAGAGTCCTTCGAAAAACAAAAAC
CCTTCACGGCCACGTATATTGTGATAACTAAAGACCTACAAGCCGGCACA
GAGCTTCTTACATCGTACGGTCGCGAATACGAAAATCGAGGCTACCGAGT
ATGCAAGATGAACAGGAAGACGTACGAGGCATTAGTAGACCGGGCGTATG
ACTTTATTGATGAGCTGGCGCAGAAAAAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1531:17866..18447-

>mRNA_L-elsbetiae_contig1531.3766.1 ID=mRNA_L-elsbetiae_contig1531.3766.1|Name=mRNA_L-elsbetiae_contig1531.3766.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig1531:17866..18447- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCACGTATCATCAATCAAAATGGTGTCTTGGAGGTCCGAATATCCAT
GCAGGGAGAGGAATCGGGCAATGGGGTGTACGCTATCGACGATGTGAAGG
CGGGAACAATTCTACCGTATTCAGCGGTTGCTTTCAAAGAATCTAATGCA
CCAGAAGACATGGACAGAACGTATGTCATAGGGGCAAATTTTTACAACGC
CAAGGGCAAAGCATGCACGTTCAAGATTTATTCCGTGGACGGGAAACCCT
TTCTCGAACCAGTCGAGCCACTAGAAGAATTCGCCAAGCTCGGGTGCCAC
ATCAACGAAGCGTCTGTGGGGAAAAAAATAAATTGCATTCTCTGCATAAA
TCCTTCTCTAACCATCGGTACGTTCAGAGAGTCCTTCGAAAAACAAAAAC
CCTTCACGGCCACGTATATTGTGATAACTAAAGACCTACAAGCCGGCACA
GAGCTTCTTACATCGTACGGTCGCGAATACGAAAATCGAGGCTACCGAGT
ATGCAAGATGAACAGGAAGACGTACGAGGCATTAGTAGACCGGGCGTATG
ACTTTATTGATGAGCTGGCGCAGAAAAAATAGATGGCACGTATCATCAAT
CAAAATGGTGTCTTGGAGGTCCGAATATCCATGCAGGGAGAGGAATCGGG
CAATGGGGTGTACGCTATCGACGATGTGAAGGCGGGAACAATTCTACCGT
ATTCAGCGGTTGCTTTCAAAGAATCTAATGCACCAGAAGACATGGACAGA
ACGTATGTCATAGGGGCAAATTTTTACAACGCCAAGGGCAAAGCATGCAC
GTTCAAGATTTATTCCGTGGACGGGAAACCCTTTCTCGAACCAGTCGAGC
CACTAGAAGAATTCGCCAAGCTCGGGTGCCACATCAACGAAGCGTCTGTG
GGGAAAAAAATAAATTGCATTCTCTGCATAAATCCTTCTCTAACCATCGG
TACGTTCAGAGAGTCCTTCGAAAAACAAAAACCCTTCACGGCCACGTATA
TTGTGATAACTAAAGACCTACAAGCCGGCACAGAGCTTCTTACATCGTAC
GGTCGCGAATACGAAAATCGAGGCTACCGAGTATGCAAGATGAACAGGAA
GACGTACGAGGCATTAGTAGACCGGGCGTATGACTTTATTGATGAGCTGG
CGCAGAAAAAATAG
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