mRNA_L-elsbetiae_contig1531.3765.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1531.3765.1
Unique NamemRNA_L-elsbetiae_contig1531.3765.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1531.3765.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.050e-62
Identity = 91/178 (51.12%), Postives = 128/178 (71.91%), Query Frame = 1 
Query:    1 MKFAFVPIWGEKDNKPLAWVGPLKNMAPEARKHLSTMDRQKLLRRQDGKCNCCGEGIQLYPFANCDADHILGVARGGKTTLENMQLLCVCGHRSKSSHEARNSVKVLDIGVQLDERELYIFTSGILQFPVDKRTPLEAVTDGCGLSLLTFSRVDREYIEIMEHEVDFETMLARFAFRP 534
            MK  F+P++    +KP+A++GP  N+ P ARKHL+   +  +L RQ  +CN CG+ I++YP+A+CDADHI+GV RGGKT  ENM LLC+  HR K+  EA    + +D+ ++  +  +YIFT G+L +PVDKRTPLEA+T+GC LSLLTF++VDR Y+E    EVD+  MLA+FA+ P
Sbjct:    1 MKHLFLPVFSGTGSKPVAYIGPSLNLRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLEAGGLPRTVDVALEPGDTSVYIFTEGVLAYPVDKRTPLEAITNGCALSLLTFNKVDRAYVEPAYGEVDYAKMLAKFAYTP 178
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BLAST of mRNA_L-elsbetiae_contig1531.3765.1 vs. uniprot
Match: D7G322_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G322_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.730e-57
Identity = 82/181 (45.30%), Postives = 123/181 (67.96%), Query Frame = 1 
Query:    1 MKFAFVPIWGEKDNKPLAWVGPLKNMAPEARKHLSTMDRQKLLRRQDGKCNCCGEGIQLYPFANCDADHILGVARGGKTTLENMQLLCVCGHRSKSSHEARNSVKVLDIGVQLDERELYIFTSGILQFPVDKRTPLEAVTDGCGLSLLTFSRVDREYIEIMEHEVDFETMLARFAFRPATI 543
            M+  F+P++G     P+A+VGP  N+ P ARKHL+   +Q +L+ Q  +CN CG+ I L P+ANCDADH++GV RGG+T  EN Q+LCV  HR K+  EA  S + +++ ++  +  +YIFT G +  P DKRTPLEA+ DGC LS++T+ RV+R+ +++++  VD+  ML RF + P  I
Sbjct:    1 MRCTFLPVFGGVGQAPVAYVGPSHNLRPRARKHLTRSQKQAVLQTQRSRCNSCGDLIHLQPYANCDADHVIGVCRGGETVEENTQMLCVRCHRQKTCLEAGGSPRTVEVALEPGDSNVYIFTGGTMDLPCDKRTPLEAIGDGCALSIITYKRVNRKVVKVVDEGVDYAKMLQRFVYNPVKI 181
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BLAST of mRNA_L-elsbetiae_contig1531.3765.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K)

HSP 1 Score: 187 bits (475), Expect = 2.160e-57
Identity = 87/181 (48.07%), Postives = 121/181 (66.85%), Query Frame = 1 
Query:    1 MKFAFVPIWGEKDNKPLAWVGPLKNMAPEARKHLSTMDRQKLLRRQDGKCNCCGEGIQLYPFANCDADHILGVARGGKTTLENMQLLCVCGHRSKSSHEARNSVKVLDIGVQLDERELYIFTSGILQFPVDKRTPLEAVTDGCGLSLLTFSRVDREYIEIMEHEVDFETMLARFAFRPATI 543
            M   F+P++    +KP+A++GP  N+ P ARKHL+   +  +L RQ  +CN  G+ I +YP+ANCDADHI+ V RGGKT  ENM LLC+  HR K+  EA    + +++ ++  +  +YIFT G+L FPVDKRTPLEA+ DGC LSLL++ RVDR ++E    EVD+  ML RF + P  I
Sbjct:    1 MTHLFLPVFSGTASKPVAYIGPSHNLRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLEAGGLPRTVNVALEPGDTSVYIFTEGVLAFPVDKRTPLEAIGDGCALSLLSYKRVDRTFVEPAYEEVDYAKMLQRFVYTPPPI 181
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BLAST of mRNA_L-elsbetiae_contig1531.3765.1 vs. uniprot
Match: UPI000AD2896B (DUF262 domain-containing protein n=1 Tax=Mycoplasma pirum TaxID=2122 RepID=UPI000AD2896B)

HSP 1 Score: 56.6 bits (135), Expect = 3.440e-6
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:  115 RQKLLRRQDGKCNCCGEGIQLYPFANCDADHILGVARGGKTTLENMQLLCVCGHRSKS 288
            R ++ ++ D KCN C   I    F  C+ DHI+  A+GGKT L NMQ+LC+  +R KS
Sbjct:  347 RLEIWKKSDKKCNICKRNI--LNFNECEIDHIIPFAKGGKTELHNMQILCILCNRKKS 402
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BLAST of mRNA_L-elsbetiae_contig1531.3765.1 vs. uniprot
Match: A0A315EGQ7_9BURK (HNHc domain-containing protein n=1 Tax=Limnohabitans curvus TaxID=323423 RepID=A0A315EGQ7_9BURK)

HSP 1 Score: 48.9 bits (115), Expect = 6.180e-5
Identity = 23/52 (44.23%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:  133 RQDGKCNCCGEGIQLYPFANCDADHILGVARGGKTTLENMQLLCVCGHRSKS 288
            RQ G C  C +    Y     +ADHI+  ++GGKTT+EN Q+LC   +R+KS
Sbjct:    6 RQKGVCPACEKN---YAIGEMEADHIIPWSKGGKTTIENCQMLCRLDNRTKS 54
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BLAST of mRNA_L-elsbetiae_contig1531.3765.1 vs. uniprot
Match: K2ILZ8_BIFBI (HNH endonuclease n=1 Tax=Bifidobacterium bifidum LMG 13195 TaxID=1207542 RepID=K2ILZ8_BIFBI)

HSP 1 Score: 52.4 bits (124), Expect = 9.490e-5
Identity = 26/66 (39.39%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  103 STMDRQKLLR--RQDGKCNCCGEGIQLYPFANCDADHILGVARGGKTTLENMQLLCVCGHRSKSSH 294
            S  D++K ++   QDG+C  CG+    +P      DHI+  + GGKTTL+N Q+LC   +  KS+H
Sbjct:  317 SFTDKEKAVKYAEQDGRCAICGKE---FPIEKMQGDHIVPWSEGGKTTLDNCQMLCTTCNIKKSNH 379
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1531.3765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LP55_ECTSI1.050e-6251.12EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7G322_ECTSI1.730e-5745.30EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNP5_ESV1K2.160e-5748.07EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
UPI000AD2896B3.440e-644.83DUF262 domain-containing protein n=1 Tax=Mycoplasm... [more]
A0A315EGQ7_9BURK6.180e-544.23HNHc domain-containing protein n=1 Tax=Limnohabita... [more]
K2ILZ8_BIFBI9.490e-539.39HNH endonuclease n=1 Tax=Bifidobacterium bifidum L... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1531contigL-elsbetiae_contig1531:17167..17712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-16 HNH nuclease
Ec32 orthologEc-06_006570.1
Exons1
Model size546
Cds size546
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815623.822356-CDS-L-elsbetiae_contig1531:17166..177121622815623.822356-CDS-L-elsbetiae_contig1531:17166..17712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1531 17167..17712 -
1691682997.9109144-CDS-L-elsbetiae_contig1531:17166..177121691682997.9109144-CDS-L-elsbetiae_contig1531:17166..17712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1531 17167..17712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1531.3765.1prot_L-elsbetiae_contig1531.3765.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1531 17167..17712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1531.3765.1

>prot_L-elsbetiae_contig1531.3765.1 ID=prot_L-elsbetiae_contig1531.3765.1|Name=mRNA_L-elsbetiae_contig1531.3765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MKFAFVPIWGEKDNKPLAWVGPLKNMAPEARKHLSTMDRQKLLRRQDGKC
NCCGEGIQLYPFANCDADHILGVARGGKTTLENMQLLCVCGHRSKSSHEA
RNSVKVLDIGVQLDERELYIFTSGILQFPVDKRTPLEAVTDGCGLSLLTF
SRVDREYIEIMEHEVDFETMLARFAFRPATI*
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mRNA from alignment at L-elsbetiae_contig1531:17167..17712-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1531.3765.1 ID=mRNA_L-elsbetiae_contig1531.3765.1|Name=mRNA_L-elsbetiae_contig1531.3765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig1531:17167..17712- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCGCGTTCGTTCCGATCTGGGGCGAGAAGGACAATAAGCCACT
GGCATGGGTCGGGCCGCTGAAAAATATGGCACCCGAGGCCCGTAAGCATC
TCAGCACGATGGACAGGCAAAAATTGTTGAGACGCCAAGACGGCAAGTGT
AATTGCTGCGGAGAGGGCATCCAGCTCTACCCCTTCGCCAACTGCGATGC
GGACCATATCCTTGGCGTGGCCAGAGGGGGCAAAACCACGCTTGAAAACA
TGCAACTGCTCTGTGTGTGCGGGCACCGCAGCAAGAGCTCACACGAGGCG
AGGAATTCCGTCAAGGTGTTGGATATAGGCGTGCAACTTGACGAGAGAGA
GCTTTACATCTTCACGTCCGGAATACTGCAGTTTCCTGTCGACAAGCGAA
CGCCTCTCGAGGCCGTCACCGACGGGTGCGGTCTGTCGCTTCTGACTTTC
AGTAGGGTTGACAGAGAGTACATAGAAATTATGGAACACGAGGTGGACTT
CGAAACAATGCTTGCCAGGTTTGCTTTCAGACCCGCGACAATTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1531:17167..17712-

>mRNA_L-elsbetiae_contig1531.3765.1 ID=mRNA_L-elsbetiae_contig1531.3765.1|Name=mRNA_L-elsbetiae_contig1531.3765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig1531:17167..17712- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCGCGTTCGTTCCGATCTGGGGCGAGAAGGACAATAAGCCACT
GGCATGGGTCGGGCCGCTGAAAAATATGGCACCCGAGGCCCGTAAGCATC
TCAGCACGATGGACAGGCAAAAATTGTTGAGACGCCAAGACGGCAAGTGT
AATTGCTGCGGAGAGGGCATCCAGCTCTACCCCTTCGCCAACTGCGATGC
GGACCATATCCTTGGCGTGGCCAGAGGGGGCAAAACCACGCTTGAAAACA
TGCAACTGCTCTGTGTGTGCGGGCACCGCAGCAAGAGCTCACACGAGGCG
AGGAATTCCGTCAAGGTGTTGGATATAGGCGTGCAACTTGACGAGAGAGA
GCTTTACATCTTCACGTCCGGAATACTGCAGTTTCCTGTCGACAAGCGAA
CGCCTCTCGAGGCCGTCACCGACGGGTGCGGTCTGTCGCTTCTGACTTTC
AGTAGGGTTGACAGAGAGTACATAGAAATTATGGAACACGAGGTGGACTT
CGAAACAATGCTTGCCAGGTTTGCTTTCAGACCCGCGACAATTTAGATGA
AGTTCGCGTTCGTTCCGATCTGGGGCGAGAAGGACAATAAGCCACTGGCA
TGGGTCGGGCCGCTGAAAAATATGGCACCCGAGGCCCGTAAGCATCTCAG
CACGATGGACAGGCAAAAATTGTTGAGACGCCAAGACGGCAAGTGTAATT
GCTGCGGAGAGGGCATCCAGCTCTACCCCTTCGCCAACTGCGATGCGGAC
CATATCCTTGGCGTGGCCAGAGGGGGCAAAACCACGCTTGAAAACATGCA
ACTGCTCTGTGTGTGCGGGCACCGCAGCAAGAGCTCACACGAGGCGAGGA
ATTCCGTCAAGGTGTTGGATATAGGCGTGCAACTTGACGAGAGAGAGCTT
TACATCTTCACGTCCGGAATACTGCAGTTTCCTGTCGACAAGCGAACGCC
TCTCGAGGCCGTCACCGACGGGTGCGGTCTGTCGCTTCTGACTTTCAGTA
GGGTTGACAGAGAGTACATAGAAATTATGGAACACGAGGTGGACTTCGAA
ACAATGCTTGCCAGGTTTGCTTTCAGACCCGCGACAATTTAG
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