mRNA_L-elsbetiae_contig153.3758.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig153.3758.1
Unique Name	mRNA_L-elsbetiae_contig153.3758.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 1.050e-60
Identity = 150/275 (54.55%), Postives = 178/275 (64.73%), Query Frame = 3

Query:  504 QTPLHLAAAKGRALCASKLMVGGADKDSRNSQXXXXXXXXXXXXXXXXXXXXXXXXXXXDIRVAYCMFKRCSALDTAAKWGHVDVVRAFL-RHGSSAKASDEYGNTILHCAADVDGPDRDNGNVIRMLLKAGTEI-EVNNTSDGYTPLHEAVRRRIGSSGTIRALLEGGANIHALCENEGTPLHYACYRACVGGVELLLRWGADEKLTAESGDTMEDMFEAWAETDVKDDEGKKKERKADKQRIRHMLARAPADRSWRRRGWAVLARSCPSKVQL 1322
            +TPLHLAA+KG ALC S+L+            XXXXXXXXXXXXXXXXXXXXX       +R       RCS L+ AA  GH DV++A L +  S    +D  G   LH AA VDGP RDNG+ +R+LL AG ++ E NN    +TPLH AV  R  S GT+RALLEGG+NIHA    + TPLH AC  A V GVELLLRWGADEKLT   G T  D+     + D  D+E    ER+AD QRIR ML  APADRSWRRRGW VL+RSCP++V++
Sbjct:   17 ETPLHLAASKGHALCISELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACANYGLRTEG---TRCSPLEIAAHGGHADVLKALLDKDSSQLDDTDGEGWAALHYAAVVDGPVRDNGDAVRVLLGAGADVNETNNNDSCFTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEE----EREADNQRIRRMLEHAPADRSWRRRGWLVLSRSCPTRVEI 284

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.740e-50
Identity = 109/205 (53.17%), Postives = 134/205 (65.37%), Query Frame = 3

Query:  717 SALDTAAKWGHVDVVRAFL-RHGSSAKASDEYGNTILHCAADVDGPDRDNGNVIRMLLKAGTEIEVNNTSDGY-TPLHEAVRRRIGSSGTIRALLEGGANIHALCENEGTPLHYACYRACVGGVELLLRWGADEKLTAESGDTMEDMFEAWAETDVKDDEGKKKERKADKQRIRHMLARAPADRSWRRRGWAVLARSCPSKVQLA 1325
            S L+ AA  G  DVV+A L +      A+D  G   LH AA +DGP RDNG+ +R+LL+AG ++    T D   T L+ AV RRI S GTIRALLEGGANI+A    + TPLH AC R+   GVELLLRWGAD+KLT   G T   +  A  + D+ D+E      +AD QRIR MLAR PA RSWRRRGW VL+RSCP++VQ+A
Sbjct:  208 SPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTSLYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEE-----LEADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIA 407

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 4.760e-49
Identity = 108/212 (50.94%), Postives = 135/212 (63.68%), Query Frame = 3

Query:  711 RCSALDTAAKWGHVDVVRAFL-RHGSSAKASDEYGNTILHCAADVDGPDRDNGNVIRMLLKAGTEIEVNNTSDGY-TPLHEAVRRRIGSSGTIRALLEGGANIHALCENEGTPLHYACYRACVGGVELLLRWGADEKLTAESGDTMEDMFEAWAETDVKDDEGKKKERKADKQRIRHMLARAPADRSWRRRGWAVLARSCPSKVQLAKKGNS 1340
            RCS L+ AA  GH DV++A L +  S    +++ G   LH  A  D   RD G+ +R+LL AG ++ V  T+D   TPLH AV R + S+GTI ALLEGGANI+A    + TPLH AC R     VELLLRWGADEKL    GDT  D+     + D+ D+E     R+AD QRI  MLARAPADRSWRRRGW VL+RSCP++V +A   +S
Sbjct:  245 RCSPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEE-----READNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSS 451

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.690e-46
Identity = 102/199 (51.26%), Postives = 131/199 (65.83%), Query Frame = 3

Query:  774 RHGSSAKASDEYGNTILHCAA-DVDGPDRDNGNVIRMLLKAGTEIEVNNTSDGY--TPLHEAVRRRIGSSGTIRALLEGGANIHALCENEGTPLHYACYRACVGGVELLLRWGADEKLTAESGDTMED-MFEAWAET--DVKD----DEGKKKERKADKQRIRHMLARAPADRSWRRRGWAVLARSCPSKVQLAKKGNS 1340
            R+ S   A+D+ G T LHC   D++ P  DNG+ +R+LL+AG +++   T DG   TPLH AV RRI   G IRALLEGGAN++A    + TPLH AC R+ V GVE LL WGADEKLT   G+T    + ++  ET  DV D    + GK +  +AD+ RIR MLARAPADRSW RR W VL+RSCP+KVQ++   +S
Sbjct:    7 RYSSEVHATDDGGYTALHCCVCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTSSS 205

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: D8LQE2_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE2_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.210e-46
Identity = 80/130 (61.54%), Postives = 102/130 (78.46%), Query Frame = 1

Query:    7 RTRLEGVEVDIFKIVREHATSKQWREWLRAPLEHAAAKGDMDLFTRLMDAGADKSADWRGCHGRTLLGAAAYGKR-EEMVHALLKAGSEDDVNIMFGKDEESALYVAATNGAETISNALMLAGANPNVLD 393
            R+RL+G E++IFK+V+E A  +QW++W RAPLEHA A+G++DLFTRLMDAGAD  A WRGCHGRTLLGAAA G   ++MV ALL+AG+  DVN+ FG   ES L+V+A  GAE    ALM+AGA+PN+ D
Sbjct:   10 RSRLDGFEIEIFKLVKEEAAPEQWKQWFRAPLEHATARGNLDLFTRLMDAGADGEAGWRGCHGRTLLGAAACGNNSDKMVRALLEAGARRDVNVRFGNTNESTLHVSAARGAEASCTALMIAGADPNLRD 139

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 4.940e-46
Identity = 98/189 (51.85%), Postives = 123/189 (65.08%), Query Frame = 3

Query:  783 SSAKASDEYGNTILHCAADVDGPDRDNGNVIRMLLKAGTEIEVNNTSDG-YTPLHEAVRRRIGSSGTIRALLEGGANIHALCENEGTPLHYACYRACVGGVELLLRWGADEKLTAESGDTMEDMFEAWAETDVKDDEGKKKERKADKQRIRHMLARAPADRSWRRRGWAVLARSCPSKVQLAKKGNSDG 1346
            S   A+++ G   LH AA V GP  D G+ +R+LL AG ++ VN T+D  +TPLH AV  RI S GTIRALLEG A++ +   ++ TPLH AC  A V GVELLLRWGADE+LT   GD   D+  A  + D+ D+E       AD QRI  ML RAPADRSWRRRGW VL+R CP++VQ+    +S G
Sbjct:   33 SDVNATNDLGLAALHYAASVVGPVHDKGDAVRVLLGAGVDVNVNTTTDSCFTPLHVAVDGRIASDGTIRALLEG-ADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEE-----HDADNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSSRG 215

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 3.560e-45
Identity = 84/129 (65.12%), Postives = 105/129 (81.40%), Query Frame = 1

Query:    1 EDRTRLEGVEVDIFKIVREHATSKQWREWLRAPLEHAAAKGDMDLFTRLMDAGADKSADWRGCHGRTLLGAAAYGKREEMVHALLKAGSEDDVNIMFGKDEESALYVAATNGAETISNALMLAGANPNV 387
            +DRTR++G EV+IFK+V+  ATSKQW+EWLRAPLEHAAA G++ LFTRLMDAGA   A WRGC GRTLLGAAA  K ++++ ALL AG++ DVN++FG   ESAL++AA  GAE  S ALM+AGANPN+
Sbjct:   11 QDRTRVDGFEVEIFKLVQREATSKQWKEWLRAPLEHAAASGNLGLFTRLMDAGASAEAGWRGCDGRTLLGAAACSKNKKILRALLTAGAKSDVNVLFGAKRESALHLAAARGAEEASKALMIAGANPNL 139

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.870e-44
Identity = 87/127 (68.50%), Postives = 106/127 (83.46%), Query Frame = 1

Query:   16 LEGVEVDIFKIVREHATSKQWREWLRAPLEHAAAKGDMDLFTRLMDAGADKSADWRGCHGRTLLGAAAYGKREEMVHALL-KAGSEDDVNIMFGKDEESALYVAATNGAETISNALMLAGANPNVLD 393
            L+G+EV+IFK+VRE ATS QWREWLRAPLEHAAA+G++DLFTRLMDAGAD SA WRGCHGRTLLGAAAYGK EE+V  LL + G+ +DVN+ FG   ESAL+VAA    + +S  L++AGA+PN+LD
Sbjct:   65 LDGLEVEIFKLVREQATSMQWREWLRAPLEHAAAEGNIDLFTRLMDAGADGSAGWRGCHGRTLLGAAAYGKNEEIVERLLAEDGATEDVNVCFGDRLESALHVAAGRDDQHLSRVLLIAGADPNLLD 191

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 8.250e-44
Identity = 96/181 (53.04%), Postives = 121/181 (66.85%), Query Frame = 3

Query:  801 DEYGNTILHCAADVDGPDRDNGNVIRMLLKAGTEIEVNNTSD--GYTPLHEAVRRRIGSSGTIRALLEGGANIHALCENEGTPLHYACYRACVGGVELLLRWGADEKLTAESGDTMEDMFEAWAETDVKDDEGKKKERKADKQRIRHMLARAPADRSWRRRGWAVLARSCPSKVQLAKKGN 1337
            D+ G T +HCA +  GP  DNG V+R+LL+AG  +      D   +TPLH AV RRI S  T  ALLEGGAN +A  ++ GTPLH AC  + V  VELLLRWGADE  + ++GD   D+   +   DV D++ K     AD +RIR MLARAPADRSWRRRGW VL+RSCP++VQ+A KG+
Sbjct:  273 DDQGYTAIHCAVNRHGP-LDNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVK-----ADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANKGS 447

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BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Match: D8LQE9_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQE9_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 4.980e-43
Identity = 81/131 (61.83%), Postives = 104/131 (79.39%), Query Frame = 1

Query:    4 DRTRLEGVEVDIFKIVREHATSKQWREWLRAPLEHAAAKGDMDLFTRLMDAGADKSADWRG--CHGRTLLGAAAYG-KREEMVHALLKAGSEDDVNIMFGKDEESALYVAATNGAETISNALMLAGANPNV 387
            DR+R++G E++IFK+V+E AT+ QW++WLR PLEHAAAKG++DLFTRLMDAGA     WRG  CH RTLLGAAA G K ++M+ ALL+AG  DDVN +FG + ESAL+V+A  GAE  S ALM AGA+P++
Sbjct:    7 DRSRVDGFEIEIFKLVKEEATAGQWKQWLRTPLEHAAAKGNLDLFTRLMDAGAGGEPGWRGWGCHERTLLGAAACGTKSDKMIWALLEAGVTDDVNAVFGTERESALHVSAARGAEEASKALMAAGADPDL 137

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig153.3758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LQI9_ECTSI	1.050e-60	54.55	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L812_9PHAE	1.740e-50	53.17	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LQN0_ECTSI	4.760e-49	50.94	Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo...	[more]
A0A6H5K6K9_9PHAE	1.690e-46	51.26	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LQE2_ECTSI	3.210e-46	61.54	Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
A0A6H5JXF0_9PHAE	4.940e-46	51.85	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LD22_ECTSI	3.560e-45	65.12	MHC_I C-terminus family protein n=1 Tax=Ectocarpus...	[more]
D7G692_ECTSI	1.870e-44	68.50	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LB27_ECTSI	8.250e-44	53.04	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D8LQE9_ECTSI	4.980e-43	61.83	Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig153	contig	L-elsbetiae_contig153:14794..17929 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	125.6
Seed ortholog evalue	1.8e-26
Seed eggNOG ortholog	2880.D8LQN0
KEGG ko	ko:K21440
Hectar predicted targeting category	other localisation
GOs	GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.	response to abiotic stimulus
EggNOG OGs	COG0666@1,KOG4177@2759
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131
Exons	2
Model size	1889
Cds size	396
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig153.3758.1	prot_L-elsbetiae_contig153.3758.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig153 17408..17803 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815623.0928984-UTR-L-elsbetiae_contig153:14793..15193	1622815623.0928984-UTR-L-elsbetiae_contig153:14793..15193	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig153 14794..15193 -
1691682997.477128-UTR-L-elsbetiae_contig153:14793..15193	1691682997.477128-UTR-L-elsbetiae_contig153:14793..15193	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig153 14794..15193 -
1622815623.1031623-UTR-L-elsbetiae_contig153:16440..17407	1622815623.1031623-UTR-L-elsbetiae_contig153:16440..17407	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig153 16441..17407 -
1691682997.4920301-UTR-L-elsbetiae_contig153:16440..17407	1691682997.4920301-UTR-L-elsbetiae_contig153:16440..17407	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig153 16441..17407 -
1622815623.1246216-UTR-L-elsbetiae_contig153:17803..17929	1622815623.1246216-UTR-L-elsbetiae_contig153:17803..17929	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig153 17804..17929 -
1691682997.5111334-UTR-L-elsbetiae_contig153:17803..17929	1691682997.5111334-UTR-L-elsbetiae_contig153:17803..17929	Laminarionema elsbetiae ELsaHSoW15	UTR	L-elsbetiae_contig153 17804..17929 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815623.1150084-CDS-L-elsbetiae_contig153:17407..17803	1622815623.1150084-CDS-L-elsbetiae_contig153:17407..17803	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig153 17408..17803 -
1691682997.5027416-CDS-L-elsbetiae_contig153:17407..17803	1691682997.5027416-CDS-L-elsbetiae_contig153:17407..17803	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig153 17408..17803 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig153:14794..17929-
coding sequence from alignment at L-elsbetiae_contig153:14794..17929-

protein sequence of mRNA_L-elsbetiae_contig153.3758.1

>prot_L-elsbetiae_contig153.3758.1 ID=prot_L-elsbetiae_contig153.3758.1|Name=mRNA_L-elsbetiae_contig153.3758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MDLFTRLMDAGADKSADWRGCHGRTLLGAAAYGKREEMVHALLKAGSEDD
VNIMFGKDEESALYVAATNGAETISNALMLAGANPNVLDRFKQSPLHLAA
ESGRDEGMTVLMLGGADPKARRNVEDRRLFT*

mRNA from alignment at L-elsbetiae_contig153:14794..17929-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig153.3758.1 ID=mRNA_L-elsbetiae_contig153.3758.1|Name=mRNA_L-elsbetiae_contig153.3758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3136bp|location=Sequence derived from alignment at L-elsbetiae_contig153:14794..17929- (Laminarionema elsbetiae ELsaHSoW15)
GAAGACCGCACGCGTCTTGAGGGCGTCGAGGTCGACATCTTCAAAATCGT
CCGAGAGCATGCTACCTCCAAGCAGTGGAGGGAGTGGCTGCGGGCGCCTC
TAGAGCACGCCGCAGCCAAAGGAGACATGGACCTCTTTACCAGGCTAATG
GACGCAGGGGCTGATAAGAGTGCAGACTGGCGGGGTTGCCATGGACGAAC
GCTGCTCGGTGCTGCTGCATACGGCAAGAGAGAGGAGATGGTGCACGCGC
TGCTCAAAGCAGGGTCAGAGGATGACGTGAACATCATGTTCGGAAAGGAT
GAGGAGTCGGCACTCTATGTAGCAGCGACTAACGGCGCAGAAACGATCTC
CAACGCGCTCATGCTTGCTGGAGCAAATCCGAATGTGCTGGATAGGTTCA
AGCAGAGCCCGTTGCACCTGGCCGCTGAATCAGGGCGCGATGAGGGGATG
ACCGTCCTGATGCTGGGAGGGGCCGACCCGAAAGCAAGGAGGAACGTGGA
GGACAGACGCCTCTTCACCTAGCTGCCGCGAAAGGTCGTGCACTGTGCGC
TTCCAAGCTTATGGTCGGCGGGGCAGACAAGGACTCGCGTAACAGCCAGG
GTGAAACGCCGCTTCACTTGGCAGCGCGATGGAATCGCCTCGGGGCAGTC
GAAGAGCTCTTGGCTGCTGGTGCCAACCTCGACATTCGTGTGGCCTACTG
CATGTTCAAACGATGCTCTGCACTCGATACCGCGGCGAAGTGGGGCCATG
TGGACGTTGTGAGAGCATTTTTACGGCACGGGAGTAGCGCCAAGGCGTCT
GATGAGTATGGCAACACAATTCTGCACTGTGCCGCTGACGTTGATGGGCC
TGACCGCGACAATGGCAACGTCATTCGTATGTTGCTCAAAGCCGGGACTG
AAATCGAAGTAAACAATACCAGCGATGGCTATACGCCGCTTCACGAGGCT
GTCCGTAGAAGAATAGGATCGAGCGGTACGATCCGCGCCTTGCTGGAGGG
CGGCGCGAACATACACGCCCTCTGTGAAAACGAAGGCACCCCGCTGCACT
ACGCTTGCTACAGAGCCTGTGTTGGTGGTGTGGAACTGTTGCTGCGCTGG
GGAGCAGATGAGAAACTCACAGCCGAATCTGGAGACACGATGGAAGACAT
GTTCGAAGCATGGGCAGAGACCGACGTAAAAGATGACGAAGGCAAAAAAA
AAGAGCGCAAGGCCGACAAGCAGCGCATTCGCCACATGCTGGCACGCGCT
CCAGCCGACAGGTCCTGGCGTCGTCGTGGGTGGGCGGTGCTAGCCCGCTC
CTGCCCAAGTAAGGTGCAGCTTGCAAAGAAAGGCAACAGCGACGGCGGCG
GCGGTGGCAGTGGCAACTGGATCGATGGGGTTGGGGGAGACAAAACAACT
GGAGACGGCCGACTTGGAGCGGTTGGTTGGCCGAGTGGTTGGACTGGATG
TGGAGGGCTTGTTTCGCTTGGTGGTGGGCTTCCTATAAGGTGCGAGCGTG
GATTGCTGTTGATGTGAATGTGTGTTAAGATTGTTGATGTGTTTTGGTAC
GATTTGTGCCGCCACAAGTGCGAAGCGCTGCTCTACTCTGCCTGAAGATG
GAGTCACTGATTGTGAAACCAGCTGAGGCACATGCCAAAGAGAGTTGTCT
TGTGTACTCATGTTAATGGAACTTTAACACTTTGCATGTTCGACGACAGC
TCCGGGGCTTGAAAAACCTTACAGTGATGAACAATTTTCAGTTGAGGGGA
ATGTTGAGATGATGGAGAAACATGTTTCCCAACTCGTTCAGTTGTTGCAA
CTCCTCCTTGTTCAAAAGTGGTTTTGATGGTGATCCAGCCTATTTTAGTT
TCAATACGCATGTGAGAAATAGAAGCAGTGAAACCTTGTTCTAGCATTCC
TACCCCGCAACCCCGCATGCTTGTCGCCACACACGCGTGAAATCGCAAAA
TGCCAATATCGAAAACGCTATATACGAGACGGTGCTGTTTTTTATATTTT
GCGGCCGGTGCAGATAATGGTTGTTCCTACAATATTTTAAGAGGATGGCA
ATTGTTTTCAATTGACATCTCTACACAAGGTTTTGGCCGCTGCCCGGACC
GCTCGGTTGTAAGCGATCCCAAGGGAGTTCTCAAAGCGTAGTGAGACTTG
GGGTGCGGTGGAGGTGGAGGTGAGAGTGCCCGCATATAAAAAGGTGTGTC
ATGTACGGCGTGGCGATTGGCAGTCCTACCTCAGATGGGACTACTGTCGG
AACACGCCGAGAGAAGGGAGCGCCCCAGGAAGGACCTAATTTCCACTTAC
CGCGACACCGCGCCAGATTGATCTATATGAGAGGGCGGTGACTTTTTTAG
GCCTGATTTCCACCAACGCCCAAACAGACGTTGAGACACGCGACACCGCT
GCAGTTGCGAGATGCCCCTAACATAAATTAGCGAGCAACCTATTGTGCGT
AGTCCGTCCATACTCATGGCGGTAGGTATGCTGTAAGCGGGTGTCGTTGC
GATGAACCATCCTCGCCGCCCTTTTCTTTTCCGTTGCAGCCAACTCGTCG
CGCACCCCAACAGCAGCGCCTGATACAGCAGTGTAGTGACGGTGACATAA
AGCAGAGGCCATGTGAAGGGCGCGTATCAACAGGCACATCGTCTAGTGCC
TACTCTCTTGCGCATGACCCTTGCTCGCATCCGCACGATGACACAGCAGT
TCATCGACTCCTCTCTTGGTGCTTGCCGCCATTCAGGTGCTCGAGGTGGA
ACCGTGGAACACTGAACGCCACGGCAGAAACACGGGCAAGGCATGGGCGG
AGTATGGAGAGCGAGTCCCTGCGTACCTCGAAAACTGCCGAGCACGGCCC
TATGGGTCCGTACAGCAAAACGCGTTTCGCATGGTTCGCCAGCTGTACGC
ACCCCAAGTCCCACGCTGCTCTGTAATGGAGGCCGGAGGTCAGGCAGCGG
GTGGGGGCGTTGACCGATAAGCTGGCAACGGACCCGCGTTATCGGGACAA
GTTCACCCGACGGAGGACCCCGCGCATGGGGAGCCCGGACTCTCCCAGCA
GCAGGAGCGCGAGCGCGGGGAGCCCGAGGGGACCGTTGCCGGCGTCCGAC
AGTACCAGTAACGCCCGCGGTGTCGGAGAGGGCGTG

Coding sequence (CDS) from alignment at L-elsbetiae_contig153:14794..17929-

>mRNA_L-elsbetiae_contig153.3758.1 ID=mRNA_L-elsbetiae_contig153.3758.1|Name=mRNA_L-elsbetiae_contig153.3758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig153:14794..17929- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCTCTTTACCAGGCTAATGGACGCAGGGGCTGATAAGAGTGCAGA
CTGGCGGGGTTGCCATGGACGAACGCTGCTCGGTGCTGCTGCATACGGCA
AGAGAGAGGAGATGGTGCACGCGCTGCTCAAAGCAGGGTCAGAGGATGAC
GTGAACATCATGTTCGGAAAGGATGAGGAGTCGGCACTCTATGTAGCAGC
GACTAACGGCGCAGAAACGATCTCCAACGCGCTCATGCTTGCTGGAGCAA
ATCCGAATGTGCTGGATAGGTTCAAGCAGAGCCCGTTGCACCTGGCCGCT
GAATCAGGGCGCGATGAGGGGATGACCGTCCTGATGCTGGGAGGGGCCGA
CCCGAAAGCAAGGAGGAACGTGGAGGACAGACGCCTCTTCACCTAGATGG
ACCTCTTTACCAGGCTAATGGACGCAGGGGCTGATAAGAGTGCAGACTGG
CGGGGTTGCCATGGACGAACGCTGCTCGGTGCTGCTGCATACGGCAAGAG
AGAGGAGATGGTGCACGCGCTGCTCAAAGCAGGGTCAGAGGATGACGTGA
ACATCATGTTCGGAAAGGATGAGGAGTCGGCACTCTATGTAGCAGCGACT
AACGGCGCAGAAACGATCTCCAACGCGCTCATGCTTGCTGGAGCAAATCC
GAATGTGCTGGATAGGTTCAAGCAGAGCCCGTTGCACCTGGCCGCTGAAT
CAGGGCGCGATGAGGGGATGACCGTCCTGATGCTGGGAGGGGCCGACCCG
AAAGCAAGGAGGAACGTGGAGGACAGACGCCTCTTCACCTAG