mRNA_L-elsbetiae_contig15279.3743.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15279.3743.1
Unique NamemRNA_L-elsbetiae_contig15279.3743.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15279.3743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15279contigL-elsbetiae_contig15279:1073..1715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size643
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15279.3743.1prot_L-elsbetiae_contig15279.3743.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15279 1170..1625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.8866153-UTR-L-elsbetiae_contig15279:1072..11691622815621.8866153-UTR-L-elsbetiae_contig15279:1072..1169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15279 1073..1169 +
1691682996.802424-UTR-L-elsbetiae_contig15279:1072..11691691682996.802424-UTR-L-elsbetiae_contig15279:1072..1169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15279 1073..1169 +
1622815621.9067988-UTR-L-elsbetiae_contig15279:1625..17151622815621.9067988-UTR-L-elsbetiae_contig15279:1625..1715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15279 1626..1715 +
1691682996.8242798-UTR-L-elsbetiae_contig15279:1625..17151691682996.8242798-UTR-L-elsbetiae_contig15279:1625..1715Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15279 1626..1715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.8969405-CDS-L-elsbetiae_contig15279:1169..16251622815621.8969405-CDS-L-elsbetiae_contig15279:1169..1625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15279 1170..1625 +
1691682996.8151004-CDS-L-elsbetiae_contig15279:1169..16251691682996.8151004-CDS-L-elsbetiae_contig15279:1169..1625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15279 1170..1625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15279.3743.1

>prot_L-elsbetiae_contig15279.3743.1 ID=prot_L-elsbetiae_contig15279.3743.1|Name=mRNA_L-elsbetiae_contig15279.3743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MPPMYTCVPCRSPVIHSFLSPGSSTGAPRLICSVSAVCSVLPACLPPLPP
PPRALSATSKDQALSVALNTAYTVSVRELLSRTGGVWDSFSRPDISTMGG
GVAPVSKNKIFVQSQPASERGPVCRRGPRGWYIYVSHPCANSRALTVLLL
L*
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mRNA from alignment at L-elsbetiae_contig15279:1073..1715+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15279.3743.1 ID=mRNA_L-elsbetiae_contig15279.3743.1|Name=mRNA_L-elsbetiae_contig15279.3743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=643bp|location=Sequence derived from alignment at L-elsbetiae_contig15279:1073..1715+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGGCTGGCACGCAAAAAAGGGTGTTGGGGGTTGGTCTCTTTTTCAAGA
TGAATACTGCCATCAAAACGAAAAAAGGGCATTGGGCCGTCAGCTAGATG
CCCCCTATGTACACATGTGTACCATGTCGGTCTCCGGTAATTCACTCGTT
CTTGAGCCCAGGGTCTTCCACCGGGGCGCCGCGACTCATCTGCAGCGTTT
CTGCCGTATGTAGCGTGCTGCCTGCCTGCCTGCCGCCCCTCCCCCCGCCT
CCCCGCGCGCTCTCCGCCACATCCAAAGACCAAGCCTTGTCTGTCGCACT
GAATACTGCATACACCGTGAGTGTGCGTGAGCTCCTCTCTCGCACAGGAG
GGGTGTGGGATAGTTTTTCACGGCCCGACATTTCGACAATGGGGGGAGGA
GTGGCACCGGTCTCGAAAAACAAGATTTTTGTACAATCTCAACCGGCATC
TGAGAGAGGCCCGGTTTGTCGACGGGGGCCACGCGGGTGGTACATATACG
TATCGCACCCCTGCGCGAACTCACGCGCGCTTACAGTTCTGCTATTACTG
TAATCATGCGAAGGTTCGCACCCCCGTGTCAGCATTTTCTAAAGCGTATT
TCTCAACAACCAGGAGGGTACCACTGCCGAAAAGGGTGGTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15279:1073..1715+

>mRNA_L-elsbetiae_contig15279.3743.1 ID=mRNA_L-elsbetiae_contig15279.3743.1|Name=mRNA_L-elsbetiae_contig15279.3743.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig15279:1073..1715+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCTATGTACACATGTGTACCATGTCGGTCTCCGGTAATTCACTC
GTTCTTGAGCCCAGGGTCTTCCACCGGGGCGCCGCGACTCATCTGCAGCG
TTTCTGCCGTATGTAGCGTGCTGCCTGCCTGCCTGCCGCCCCTCCCCCCG
CCTCCCCGCGCGCTCTCCGCCACATCCAAAGACCAAGCCTTGTCTGTCGC
ACTGAATACTGCATACACCGTGAGTGTGCGTGAGCTCCTCTCTCGCACAG
GAGGGGTGTGGGATAGTTTTTCACGGCCCGACATTTCGACAATGGGGGGA
GGAGTGGCACCGGTCTCGAAAAACAAGATTTTTGTACAATCTCAACCGGC
ATCTGAGAGAGGCCCGGTTTGTCGACGGGGGCCACGCGGGTGGTACATAT
ACGTATCGCACCCCTGCGCGAACTCACGCGCGCTTACAGTTCTGCTATTA
CTGTAAATGCCCCCTATGTACACATGTGTACCATGTCGGTCTCCGGTAAT
TCACTCGTTCTTGAGCCCAGGGTCTTCCACCGGGGCGCCGCGACTCATCT
GCAGCGTTTCTGCCGTATGTAGCGTGCTGCCTGCCTGCCTGCCGCCCCTC
CCCCCGCCTCCCCGCGCGCTCTCCGCCACATCCAAAGACCAAGCCTTGTC
TGTCGCACTGAATACTGCATACACCGTGAGTGTGCGTGAGCTCCTCTCTC
GCACAGGAGGGGTGTGGGATAGTTTTTCACGGCCCGACATTTCGACAATG
GGGGGAGGAGTGGCACCGGTCTCGAAAAACAAGATTTTTGTACAATCTCA
ACCGGCATCTGAGAGAGGCCCGGTTTGTCGACGGGGGCCACGCGGGTGGT
ACATATACGTATCGCACCCCTGCGCGAACTCACGCGCGCTTACAGTTCTG
CTATTACTGTAA
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