mRNA_L-elsbetiae_contig1527.3739.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1527.3739.1
Unique NamemRNA_L-elsbetiae_contig1527.3739.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1527.3739.1 vs. uniprot
Match: A0A6H5JZV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZV9_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.420e-57
Identity = 144/255 (56.47%), Postives = 156/255 (61.18%), Query Frame = 3 
Query:    3 RAMGKEPRCLGVKKLLPPNIXXXXXXXXXXXXXXXXFFFIGVGVSVYNKEMLDNNRLPLVNGFSQLVISKAEQRD-----------ESAAAAAARAESDGAEGGDASGHRLGHRHRQPPPAPHAVETPGVGVAAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPSNRDQMEALMAYAAGRVRKQVEITKQVAEELTKLTPGKLREATVVQANKVQEMPALLLDTSKRMVGSGTKVVRKYLDEQERK 734
            RA+G+EP+CLG K  LPPNI  XXXXXXXXXXXX  FFFIGVGVSVYNKEML NNRLPLVNGFSQLV+SK E+RD           E  AAAAAR             H  G+R  QP  A  A    G   AA                                       + R Q+EALM+YA GR+RKQVEIT QV +EL KLTPGKLREATVVQANKVQEMP LLLDTSKRMV SGTK VR YL+EQERK
Sbjct:   31 RAVGQEPQCLGFKTALPPNIIIXXXXXXXXXXXXAKFFFIGVGVSVYNKEMLSNNRLPLVNGFSQLVVSKEEERDKTDALHNGRIGEYEAAAAARH------------HGRGNRQPQPHTAAEASAQGGRQGAA----------------VPTTLSQRSGVAGDGVEERSSSTTGRKQVEALMSYAVGRIRKQVEITMQVTDELKKLTPGKLREATVVQANKVQEMPTLLLDTSKRMVDSGTKFVRNYLEEQERK 257
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BLAST of mRNA_L-elsbetiae_contig1527.3739.1 vs. uniprot
Match: D8LTV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV3_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 2.720e-42
Identity = 105/204 (51.47%), Postives = 119/204 (58.33%), Query Frame = 3 
Query:  126 VGVSVYNKEMLDNNRLPLVNGFSQLVISKAEQRDESAAAAAARAESDGAEGGDASGHRLGHRHRQPPPAPHAV-ETPGVGVAAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPSNRDQMEALMAYAAGRVRKQVEITKQVAEELTKLTPGKLREATVVQANKVQEMPALLLDTSKRMVGSGTKVVRKYLDEQERK 734
            +GVSVYNKEML NNRLPLVNGFSQL++SK E++D++ A    R    G    D         H QP   PHA  E P  G   G                                      + R Q+EALMAYA GR+RKQV+IT QV +EL KLTP K+REATVVQANKVQEMP LLLDTSKRMV SGTK VR YL+EQERK
Sbjct:    1 MGVSVYNKEMLSNNRLPLVNGFSQLLVSKEEEKDKADARHNGRK---GEHEADXXXXXXXRGHLQP--QPHAAAEAPAQGGRQGAAVPTTLSQRSGVAGDGVEEGSSST-------------TGRKQVEALMAYAVGRIRKQVDITIQVTDELKKLTPEKVREATVVQANKVQEMPTLLLDTSKRMVDSGTKFVRNYLEEQERK 186
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1527.3739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZV9_9PHAE1.420e-5756.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTV3_ECTSI2.720e-4251.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1527contigL-elsbetiae_contig1527:20357..23104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002620.1
Exons2
Model size1370
Cds size732
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1527.3739.1prot_L-elsbetiae_contig1527.3739.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1527 20365..22474 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.6127477-UTR-L-elsbetiae_contig1527:20356..203641622815621.6127477-UTR-L-elsbetiae_contig1527:20356..20364Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1527 20357..20364 +
1691682996.6509-UTR-L-elsbetiae_contig1527:20356..203641691682996.6509-UTR-L-elsbetiae_contig1527:20356..20364Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1527 20357..20364 +
1622815621.6553519-UTR-L-elsbetiae_contig1527:22474..231041622815621.6553519-UTR-L-elsbetiae_contig1527:22474..23104Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1527 22475..23104 +
1691682996.6795146-UTR-L-elsbetiae_contig1527:22474..231041691682996.6795146-UTR-L-elsbetiae_contig1527:22474..23104Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1527 22475..23104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.628028-CDS-L-elsbetiae_contig1527:20364..204401622815621.628028-CDS-L-elsbetiae_contig1527:20364..20440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1527 20365..20440 +
1691682996.6623626-CDS-L-elsbetiae_contig1527:20364..204401691682996.6623626-CDS-L-elsbetiae_contig1527:20364..20440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1527 20365..20440 +
1622815621.6430953-CDS-L-elsbetiae_contig1527:21818..224741622815621.6430953-CDS-L-elsbetiae_contig1527:21818..22474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1527 21819..22474 +
1691682996.6711054-CDS-L-elsbetiae_contig1527:21818..224741691682996.6711054-CDS-L-elsbetiae_contig1527:21818..22474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1527 21819..22474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1527.3739.1

>prot_L-elsbetiae_contig1527.3739.1 ID=prot_L-elsbetiae_contig1527.3739.1|Name=mRNA_L-elsbetiae_contig1527.3739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MGKEPRCLGVKKLLPPNIVITEEDVVPPPPEDSKFFFIGVGVSVYNKEML
DNNRLPLVNGFSQLVISKAEQRDESAAAAAARAESDGAEGGDASGHRLGH
RHRQPPPAPHAVETPGVGVAAGRRQQQQQRPQQGSAVPATLSQRSGASTG
GGGGGEDGGPSNRDQMEALMAYAAGRVRKQVEITKQVAEELTKLTPGKLR
EATVVQANKVQEMPALLLDTSKRMVGSGTKVVRKYLDEQERKK*
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mRNA from alignment at L-elsbetiae_contig1527:20357..23104+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1527.3739.1 ID=mRNA_L-elsbetiae_contig1527.3739.1|Name=mRNA_L-elsbetiae_contig1527.3739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2748bp|location=Sequence derived from alignment at L-elsbetiae_contig1527:20357..23104+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGGGCGATGGGCAAAGAGCCGCGTTGTCTCGGGGTCAAGAAGCTCCTG
CCCCCGAACATCGTCATCACCGAGGAGGACGTCGGTGAGCTGTTGCTGCT
GCTGTTGCTGTTGCCGTCGTTGCCGTGAACAATCGTGGAGGTGTTTTTTT
CGCGTTCGAACACGCCTGTGTTTTGACACCCTGCCGACGTTCTCCGTGCC
GGTCCTGTAGATAGCGGTTGCGGGTCAAGGGCGATTGAGTAGGACTCAGC
ACTTTGCTGGTTTGATCTTGGAACTTTACCAAAGATAGGTGGTCAACACG
AATGGTTCAACAAGAAGAATGTTCCGTTATCATTTTAGCACTACAGAGTA
GTCCGACCAGTGCAAAGTGAGCGTGACAAGCTTTCACACAATTGATTCGC
TGTTTTGGTCTTGCAACTGCAGGTAGGCAGGCAGTCAACACGACTTGTCC
AATAAGGATGTTCCGTATCATCCCCCTTCTGGTAAAGCAGATGTATGTAT
GTCTACATACCTTCGAAACCTCCGTGAAAGAAAGAAAAAAAACTTCCAGT
TGGGCAAAGAGGAAGGCAGCGAGGAGACAGATGAATAAACGTGCAGGCCA
TGTTTTAGCGGTTTCGCCGCAGGCTTCTCGGTGAAACGTGGAGTAGGAGG
GGACACCCATTCAATACCTGCGACACCGGTGTTTTTGCGTCTTTTCTATG
TTGAGGTTTTGCAGGTATTAATCAAGGCCGTGGTATCGCGTACCGATCCT
TGGAGCAACACCCGAGGACTAAACTCAACCATTGACTCAAGGCGTAAGCA
CGTCCTTCCTCTTGAGACACTTTTGCAAACGCCCTCGAATAGCTGATGTT
CTGACCCCGGTTTTTGCTGCGCACAAAGCAGTCGCCACGCGTTCGGTGGC
CATGTAGTATCCATGTTCTTCGTTTTCGAGAGAGCTTTTGAGGTGCCAAC
CTTCAGTGACGACGGTTTCCTATGAGAATCTAAACCCAGACAGGGCATCT
CGGCAAAAGGGGGCGCCGGCACCGGAAAGGGTGGCATTGGGACGATCATG
CCGAGAGCTGTCTAAAAAACGTGACGTTTCGTGCTGACACGCCCTCTTCG
TTAAGGAGAAATCGAGCTTTGAAAATCGGTGCGGGGGGGTGCGATGACTC
GCATGATTACGGTACCCCTTTTTAGGGTAAGCTATCCTGTGACAAACGGG
AATCGAATCGACCGCGTCGGTGTTGGATGAATGCGGAACCATAGAGGTTA
TGCAGGATACAGAGATCCAAACGGATTTTTCATGTATAAAGACGACAACA
ACAACAACAACTACCGGTGCTGAAGCTCTTGAACCCATCCGCCTGCCTGC
CTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTCATCCACC
GCTCCCGTTGTTTTTGCTTCCCGCGTAATTATACCGTGTGCCCTATCCAT
CCCCGCCAACAGTGCCGCCACCGCCCGAGGACTCGAAGTTTTTCTTCATC
GGGGTCGGCGTGTCGGTGTACAACAAAGAGATGCTAGACAACAACCGCCT
GCCCCTGGTGAACGGCTTCAGCCAGCTGGTGATCTCCAAGGCGGAACAGC
GAGACGAATCGGCGGCGGCGGCGGCGGCGCGGGCCGAATCCGACGGCGCC
GAGGGCGGCGACGCGAGCGGACACCGGCTTGGGCACCGACACCGACAGCC
ACCGCCAGCGCCGCACGCGGTCGAAACCCCGGGGGTTGGGGTTGCGGCGG
GGAGGAGACAGCAACAGCAGCAGCGGCCGCAGCAGGGCAGCGCGGTCCCG
GCGACGCTGAGCCAACGCAGCGGCGCATCGACCGGCGGCGGCGGCGGCGG
CGAGGACGGGGGGCCCAGCAACCGCGACCAGATGGAGGCGCTGATGGCGT
ACGCGGCCGGTCGGGTCAGGAAGCAGGTGGAGATCACCAAGCAGGTCGCG
GAGGAGCTCACGAAGCTCACGCCGGGGAAGCTGCGCGAGGCCACGGTGGT
GCAGGCGAACAAAGTGCAGGAGATGCCGGCGTTGCTCCTGGACACGTCCA
AGAGGATGGTCGGGTCGGGGACCAAGGTCGTCCGGAAATACCTTGACGAG
CAAGAGCGGAAGAAGTAGATAAAATGATCTAAGCGGTCGTGTCACTGCTG
TGTATGTTTTTGCTGTTTGTCTTCGGGCTTTGGACGACGTGTTTTCGTGT
TTTCGCCAGTGTCTGCATGTTTCCGTTGTAGCTTGTCTGTGTGTTCGATG
TTTTCCCTCAAGTGAAGGGGGGGTCCTGTTTGGGGTGGTTTGATGGCGGT
TGTAAATTGTCGAGGAAATCAAAGTTCTGTGTAGGTGTCGCCCTTGTGTG
CCTCGTGTTTTTTTTTGTGCGCCTCGCAAGTGTGTGTGTGTGTCCTTCCC
ATTTATTTTGGCGACAGTCCCCCCAAGTGGAGACGTGTACTACACCTTGG
GGTGTACTTAGAAGTACTACACTTTTGTAGGGCATTTGTCTGTACAACTA
GAACCAACCGGGGTCACACAGGAGGAGGTGAAAGTGTATCTAAATTCATC
ACTATTAGCGAGGAACTTCGGAGTTCATTGTGGTGCAACGAGCAGTTTAC
CTCCTCGGGAAAGCCTTTAATAAGAGTGTAAAATGTTGTGACCGCGTGTT
GGATGCCCTTTCAAAGTTTGCCACTCGACCGGACCAAAAATAAGTCACTT
ATTGGTACCGAATTCAAAATTGAATCGCCACACGGGCGAGTCCCCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1527:20357..23104+

>mRNA_L-elsbetiae_contig1527.3739.1 ID=mRNA_L-elsbetiae_contig1527.3739.1|Name=mRNA_L-elsbetiae_contig1527.3739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig1527:20357..23104+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCAAAGAGCCGCGTTGTCTCGGGGTCAAGAAGCTCCTGCCCCCGAA
CATCGTCATCACCGAGGAGGACGTCGATGGGCAAAGAGCCGCGTTGTCTC
GGGGTCAAGAAGCTCCTGCCCCCGAACATCGTCATCACCGAGGAGGACGT
CGTGCCGCCACCGCCCGAGGACTCGAAGTTTTTCTTCATCGGGGTCGGCG
TGTCGGTGTACAACAAAGAGATGCTAGACAACAACCGCCTGCCCCTGGTG
AACGGCTTCAGCCAGCTGGTGATCTCCAAGGCGGAACAGCGAGACGAATC
GGCGGCGGCGGCGGCGGCGCGGGCCGAATCCGACGGCGCCGAGGGCGGCG
ACGCGAGCGGACACCGGCTTGGGCACCGACACCGACAGCCACCGCCAGCG
CCGCACGCGGTCGAAACCCCGGGGGTTGGGGTTGCGGCGGGGAGGAGACA
GCAACAGCAGCAGCGGCCGCAGCAGGGCAGCGCGGTCCCGGCGACGCTGA
GCCAACGCAGCGGCGCATCGACCGGCGGCGGCGGCGGCGGCGAGGACGGG
GGGCCCAGCAACCGCGACCAGATGGAGGCGCTGATGGCGTACGCGGCCGG
TCGGGTCAGGAAGCAGGTGGAGATCACCAAGCAGGTCGCGGAGGAGCTCA
CGAAGCTCACGCCGGGGAAGCTGCGCGAGGCCACGGTGGTGCAGGCGAAC
AAAGTGCAGGAGATGCCGGCGTTGCTCCTGGACACGTCCAAGAGGATGGT
CGGGTCGGGGACCAAGGTCGTCCGGAAATACCTTGACGAGCAAGAGCGGA
AGAAGTAGTGCCGCCACCGCCCGAGGACTCGAAGTTTTTCTTCATCGGGG
TCGGCGTGTCGGTGTACAACAAAGAGATGCTAGACAACAACCGCCTGCCC
CTGGTGAACGGCTTCAGCCAGCTGGTGATCTCCAAGGCGGAACAGCGAGA
CGAATCGGCGGCGGCGGCGGCGGCGCGGGCCGAATCCGACGGCGCCGAGG
GCGGCGACGCGAGCGGACACCGGCTTGGGCACCGACACCGACAGCCACCG
CCAGCGCCGCACGCGGTCGAAACCCCGGGGGTTGGGGTTGCGGCGGGGAG
GAGACAGCAACAGCAGCAGCGGCCGCAGCAGGGCAGCGCGGTCCCGGCGA
CGCTGAGCCAACGCAGCGGCGCATCGACCGGCGGCGGCGGCGGCGGCGAG
GACGGGGGGCCCAGCAACCGCGACCAGATGGAGGCGCTGATGGCGTACGC
GGCCGGTCGGGTCAGGAAGCAGGTGGAGATCACCAAGCAGGTCGCGGAGG
AGCTCACGAAGCTCACGCCGGGGAAGCTGCGCGAGGCCACGGTGGTGCAG
GCGAACAAAGTGCAGGAGATGCCGGCGTTGCTCCTGGACACGTCCAAGAG
GATGGTCGGGTCGGGGACCAAGGTCGTCCGGAAATACCTTGACGAGCAAG
AGCGGAAGAAGTAG
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