mRNA_L-elsbetiae_contig1526.3735.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1526.3735.1
Unique NamemRNA_L-elsbetiae_contig1526.3735.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1526.3735.1 vs. uniprot
Match: D7G5Y3_ECTSI (Heat shock protein 40 like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y3_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.050e-28
Identity = 75/151 (49.67%), Postives = 93/151 (61.59%), Query Frame = 3 
Query:  348 LDALE-ATRKWAEARQKYEVWACKLDRCNSTEGRVHFDLDSFDCGGGPPRDCIRAMHASLQEVYCRVLRNAGLTEEFKHALAGVAGTGTEWALAMTQRSADVESKAKHATEAFLLGQYEKALLGYSEAIPL--ADENTKVLLIANSVKALM 791
            LDALE   R+W EA+++ EVWA K   C+   GR +  L  +  GGGPP  CI AMHASLQE YC+ LRNAG T++FK ALA   GTG  WA++MT+R  DV  K + A +A+   +Y  A   YSEAI +   D  T  LL AN   ALM
Sbjct:   43 LDALEQGRRQWEEAQRRCEVWAHKRANCDFESGRNN--LAGYAEGGGPPELCIAAMHASLQEGYCKALRNAGQTDKFKEALAAATGTGVPWAMSMTRRRQDVMDKKERAGKAYASNRYRLAHELYSEAICVDPQDYYTNALLFANRAAALM 191
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1526.3735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5Y3_ECTSI1.050e-2849.67Heat shock protein 40 like protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1526contigL-elsbetiae_contig1526:8185..11809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7G5Y3
KEGG koko:K09523,ko:K09524,ko:K09527,ko:K09536
KEGG Pathwayko04141,ko05164,map04141,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsCOG0484@1,KOG0550@2759,KOG0713@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons4
Model size1693
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1526.3735.1prot_L-elsbetiae_contig1526.3735.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1526 8694..11081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.1886096-UTR-L-elsbetiae_contig1526:8184..86931622815621.1886096-UTR-L-elsbetiae_contig1526:8184..8693Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1526 8185..8693 +
1691682996.364249-UTR-L-elsbetiae_contig1526:8184..86931691682996.364249-UTR-L-elsbetiae_contig1526:8184..8693Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1526 8185..8693 +
1622815621.2545447-UTR-L-elsbetiae_contig1526:11081..118091622815621.2545447-UTR-L-elsbetiae_contig1526:11081..11809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1526 11082..11809 +
1691682996.4248643-UTR-L-elsbetiae_contig1526:11081..118091691682996.4248643-UTR-L-elsbetiae_contig1526:11081..11809Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1526 11082..11809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.200044-CDS-L-elsbetiae_contig1526:8693..87341622815621.200044-CDS-L-elsbetiae_contig1526:8693..8734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 8694..8734 +
1691682996.379541-CDS-L-elsbetiae_contig1526:8693..87341691682996.379541-CDS-L-elsbetiae_contig1526:8693..8734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 8694..8734 +
1622815621.2166092-CDS-L-elsbetiae_contig1526:9360..94751622815621.2166092-CDS-L-elsbetiae_contig1526:9360..9475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 9361..9475 +
1691682996.3894327-CDS-L-elsbetiae_contig1526:9360..94751691682996.3894327-CDS-L-elsbetiae_contig1526:9360..9475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 9361..9475 +
1622815621.228208-CDS-L-elsbetiae_contig1526:9745..99131622815621.228208-CDS-L-elsbetiae_contig1526:9745..9913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 9746..9913 +
1691682996.4038162-CDS-L-elsbetiae_contig1526:9745..99131691682996.4038162-CDS-L-elsbetiae_contig1526:9745..9913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 9746..9913 +
1622815621.239419-CDS-L-elsbetiae_contig1526:10949..110811622815621.239419-CDS-L-elsbetiae_contig1526:10949..11081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 10950..11081 +
1691682996.4150758-CDS-L-elsbetiae_contig1526:10949..110811691682996.4150758-CDS-L-elsbetiae_contig1526:10949..11081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1526 10950..11081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1526.3735.1

>prot_L-elsbetiae_contig1526.3735.1 ID=prot_L-elsbetiae_contig1526.3735.1|Name=mRNA_L-elsbetiae_contig1526.3735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
MHASLQEVYCRVLRNAGLTEEFKHALAGVAGTGTEWALAMTQRSADVESK
AKHATEAFLLGQYEKALLGYSEAIPLADENTKVLLIANSVKALMGLGRYE
EALQGCNQAFQLKSDHPQVLKCKHELQNVRRYVKETFMKNASGIGGRCDG
Y*
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mRNA from alignment at L-elsbetiae_contig1526:8185..11809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1526.3735.1 ID=mRNA_L-elsbetiae_contig1526.3735.1|Name=mRNA_L-elsbetiae_contig1526.3735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3625bp|location=Sequence derived from alignment at L-elsbetiae_contig1526:8185..11809+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCGAAATACGGCTATTTTTGGGGCGACTGATTTTTTTTCGGTCGTTCG
GCCGCACGGTTCAAGCACCATCTGAGAAAAAAAATGTTTTTCCCTCAAAA
AACACCAAAGACTTCAACAGAAATATTGAAAAACAGATTGGACACGGTTA
AGGGCCCGTACAAACATAACCAGGTAGACTTATGAGACAGAGGAAATTAC
GACACCGACAGGTGTAGTGGTATATGTGTGCAAATGAAGACGCGGTCATT
ATTTCTGCCCGTCGATTTCAAGCATGGAAAGAGCGTCGTTGTACTTGCGG
ATTCACCGCAGTTGGTATCCTCAGCTGCTTCCTAAATTGTTCAACAGTTG
GACGCGCTGGAGGCTACGCGCAAGTGGGCAGAGGCTCGACAAAAATACGA
AGTGTGGGCCTGCAAGTTAGACAGATGCAACTCAACGGAAGGACGTGTGC
ACTTTGATCTCGATAGCTTTGATTGCGGGGGCGGGCCACCACGAGACTGC
ATCCGGGCCATGCACGCTTCGCTGCAGGAGGTATACTGCAGAGTTTTGCG
GTAAGAAGGGTGGGACATATGGTGAAGGTTTTATCGTGTGGGGACAACAA
TGAAGTGCTTGGTTATCCTTGCGTAGCCATCTGTATGTGCGTGCTCACAA
CTACCAGATAATACTGTCGGTGCGTCGCAACGGGGGGAGGATAGATTCCA
AAAGCGGTCCCCAGCCTATCTATTGTAACGGCGGCAGCCCGGTAGTCCCA
CGGGGCCCTTGGGCTAACCCCAAGGGCAAGCAAAGTACGATGATACGTGC
GAGGACGATCACTCAAACGCGAAGGGCTAGATCGTTTGTCGGGGATCAGC
GGTAGATCGAGATATCGCCCCGTGTGATCTAGGGTCCCCCCCTTGGCGTA
CCATTCACGGTGCGCCAAGGAAATCACGTGACTCTTAGCTTAGTGACGCC
CCTGAAGAAGGAAGAGAATGTGTCCATGTGCCCTGTACTATCCCTGTGAA
TCACCTTGTGAGCGAGCTAACTGCTAACGGAGTGCTAAGGGGGTGGTTTT
GACTTGTAGAGTGACCATGCGTGTGCCTTGCTTGCGACATCGCCCCACTT
TGTGGTACACTGTGCTGTAGTCAACACAAGGAAAAATTTGAACTGACGAT
GGCCTGTTTCTGCTGGCGTTCTTCAGCAACGCTGGGTTGACGGAAGAGTT
CAAGCACGCACTCGCTGGGGTTGCTGGCACGGGTACTGAATGGGCATTGG
CGATGACGCAGAGATCGGCGGATGTGGAGAGTAAGGCTAAGGTGAACGAT
AGGCACGTGTTTATTGGCAAACGTTTGATGATGAGATGGAGCAGTAGAAC
GAATAATTTAGCTCGTTCAGTGGAGCCCACGATCATTGTGGGAAAAATTC
ACAGGCTTAGAAATTTGTCTAGGCGATATGTCTAAGACCGAAAGTCTCCA
TCGCAGCTGATGAGAAACAAACCCTTCCTTATTTAGTTGTCGCCCTTGAG
TTGTTGTCACCCGCCTCAATAACTTATCACCGCACTGGTCTACCCTTACT
CCTTCCTCAAGCATGCCACAGAAGCGTTCCTGCTCGGTCAGTACGAGAAA
GCACTCCTGGGGTACTCCGAGGCGATTCCCCTTGCCGATGAAAACACCAA
AGTGCTTTTGATAGCCAACTCTGTTAAAGCCTTGATGGGGCTTGGCAGAT
ACGAAGAGGCTCTACAAGGCTGCAACCAGGCGAGTCTTCTTCTTAGTGCC
CCCATGTACTCTATTTCACTTGAACTGTAGATACAATAAAGGCTGGAAGT
GGCATATGGGTGGGGGGGGTACGGGGGGGGTACTGTGACTGGTGGGTGGC
GTGTAGTTGAGCGTTTCCCGGTGTGACGGACAAGACGAATTTTGTACACA
GCAGGCCCCATTTCGTAGGGCTAAATACTTGTGGTAACGTTCGGGATGAA
AATATGCGAACAAGAAACCGCGGGATATTTCCTGCCTAAGTACCGTGGAT
GTAATATCTCCCCGCCGTCTCCCCTTCCCGCCGTGAAGATCGCTGCTCCT
CACTGCCCCGCCTTCACAGATAGATGCTGCGGGAAAACACAAGGCTAAAC
TTGTTTGGAACTCAATTCCCCTCCGGTTTTGGATTGTTTCCCCCATCGCA
TTATTCATCGCATCGAGCAAACCACGATCTTCGGGGTTTCACCAAGCAAA
ACACCTTTCGGTGCCATCGACACTCCGCCGCAGGCTAGCGACAACATTTT
CTCATGGTGTCCATCGGAAGAATTAACAATAATAGTCGCCTCCAGCGAGA
TACACAGCCACTAGGGGTTAGGAGGCCCACCTTAGAGGTGGAGGTGGGAA
AACACTCCAAGAAAGGGGGTAGAAGTCAACCGTATGCGAAGTGCGAGAAC
TTTGTATGCTAAATCCGCATTAATTGTTATATCCACACAAATCCACTACA
GTAGTAGATACATATGGTACATTTGAAATTTAGATGCATCTAAAACTCGT
GACCAGCAATAGAGTTTTTCGCTCGCCTTATAACAAGAGAATCAGCCTGG
ACCTGGCATCTGCTTTCTTGTGAGCGGGCCGGAGCTGTACAGGTGCTCAT
CTCGTGACTTCGCGAAATTTTGTTTCACCAAAGATGCTGATTATAACGAC
ATATAAAGTTGCTTTATCTATTGTCTCACACAGCAATGCCTATCACTGTG
TTTTATTTCAGCAGCAACCCGGTTCAAATATCTATTCGACAAATTTGCTT
CCACGTTAAATGCAGGCGTTTCAGCTAAAGTCCGACCACCCACAAGTCCT
CAAATGCAAGCATGAGCTTCAGAACGTGAGGCGGTACGTCAAAGAAACTT
TCATGAAGAATGCCAGCGGGATAGGAGGGAGATGCGATGGATACTGAATG
GGACTTAATTAGCGGCGGGGCAGCGTATCCTCGGTAGAAGTAGCATGTAG
TTTTTTTGTACAAACCTTCCTGCGACTTTCAGCACCAGGTCATGGCTGCT
TGAATTGATTCCTGACATGCTCGTATGCATGAAGTCTCACTTTTTTTTCT
TGAACTCAAGGTGCTTCTTCTTTAGTGTTCTCTAGTTTTTTAAATGTGGC
CATTTTTTCGCGCCTGGCCGCGGCCGTTCACAATATGCCCTTCTTTTTGT
TTTCCTTGCCCCCAATCAAAAGTTCTTAATATTTTCCAATTTAAGCTCTG
GTTTTGGTTTTGAGGGTTCCGCATCCTACATGTAGATGGCGTCGTGTGGT
GTAGACGCGGACCCGCAGCAAGGCAGGATTGGACAGGCGGCGGGGGCACG
CCATGGTGGATAAATTTTCTACCCGGCAGTCAGCATTGAATCGCGACCTG
CGGTGAACGGCAACACAAATCAAGTAAGAGCAGCGAGGGGGTGGGGCTCC
TGCGGCCTTTCGGTCATTCTCCTCGTAAGCCCCCTTCGCGGGACATCCCG
GCACACTTCTTGGAGAGCCGTAGTCATCGCAAATACATGACTATTCCCCC
CGTACTTTCACAAAGTACACAGTTTTTATAGCCAAACACCGCTCAAATCG
TGCGTTGACTGTTGTTGTGCTGGCAGAGTGAAGCATCGTAGACTATATAT
AGTTGCACCGAGAGTTATTGGGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1526:8185..11809+

>mRNA_L-elsbetiae_contig1526.3735.1 ID=mRNA_L-elsbetiae_contig1526.3735.1|Name=mRNA_L-elsbetiae_contig1526.3735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig1526:8185..11809+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGCTTCGCTGCAGGAGGTATACTGCAGAGTTTTGCGATGCACGCT
TCGCTGCAGGAGGTATACTGCAGAGTTTTGCGCAACGCTGGGTTGACGGA
AGAGTTCAAGCACGCACTCGCTGGGGTTGCTGGCACGGGTACTGAATGGG
CATTGGCGATGACGCAGAGATCGGCGGATGTGGAGAGTAAGGCTAAGCAA
CGCTGGGTTGACGGAAGAGTTCAAGCACGCACTCGCTGGGGTTGCTGGCA
CGGGTACTGAATGGGCATTGGCGATGACGCAGAGATCGGCGGATGTGGAG
AGTAAGGCTAAGCATGCCACAGAAGCGTTCCTGCTCGGTCAGTACGAGAA
AGCACTCCTGGGGTACTCCGAGGCGATTCCCCTTGCCGATGAAAACACCA
AAGTGCTTTTGATAGCCAACTCTGTTAAAGCCTTGATGGGGCTTGGCAGA
TACGAAGAGGCTCTACAAGGCTGCAACCAGCATGCCACAGAAGCGTTCCT
GCTCGGTCAGTACGAGAAAGCACTCCTGGGGTACTCCGAGGCGATTCCCC
TTGCCGATGAAAACACCAAAGTGCTTTTGATAGCCAACTCTGTTAAAGCC
TTGATGGGGCTTGGCAGATACGAAGAGGCTCTACAAGGCTGCAACCAGGC
GTTTCAGCTAAAGTCCGACCACCCACAAGTCCTCAAATGCAAGCATGAGC
TTCAGAACGTGAGGCGGTACGTCAAAGAAACTTTCATGAAGAATGCCAGC
GGGATAGGAGGGAGATGCGATGGATACTGAGCGTTTCAGCTAAAGTCCGA
CCACCCACAAGTCCTCAAATGCAAGCATGAGCTTCAGAACGTGAGGCGGT
ACGTCAAAGAAACTTTCATGAAGAATGCCAGCGGGATAGGAGGGAGATGC
GATGGATACTGA
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