mRNA_L-elsbetiae_contig15208.3718.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15208.3718.1
Unique NamemRNA_L-elsbetiae_contig15208.3718.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15208.3718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15208contigL-elsbetiae_contig15208:3386..4143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size758
Cds size423
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.2864623-UTR-L-elsbetiae_contig15208:3385..37201622815619.2864623-UTR-L-elsbetiae_contig15208:3385..3720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15208 3386..3720 +
1691682995.1011388-UTR-L-elsbetiae_contig15208:3385..37201691682995.1011388-UTR-L-elsbetiae_contig15208:3385..3720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15208 3386..3720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.3000603-CDS-L-elsbetiae_contig15208:3720..41431622815619.3000603-CDS-L-elsbetiae_contig15208:3720..4143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15208 3721..4143 +
1691682995.1098118-CDS-L-elsbetiae_contig15208:3720..41431691682995.1098118-CDS-L-elsbetiae_contig15208:3720..4143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15208 3721..4143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15208.3718.1prot_L-elsbetiae_contig15208.3718.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15208 3721..4143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15208.3718.1

>prot_L-elsbetiae_contig15208.3718.1 ID=prot_L-elsbetiae_contig15208.3718.1|Name=mRNA_L-elsbetiae_contig15208.3718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
MGRKKPQKPPDTESEQVDPVVDYEKEDSDNENAKEDDKSSSDGESSDEDP
SPAADGRAASSPRTPASDSRAVNASSDELLTPMSEEDLEALLYKEELQQH
IVAAREGRTPIPFRRSLLARADAAAAKREVALQTVSGKGN*
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mRNA from alignment at L-elsbetiae_contig15208:3386..4143+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15208.3718.1 ID=mRNA_L-elsbetiae_contig15208.3718.1|Name=mRNA_L-elsbetiae_contig15208.3718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=758bp|location=Sequence derived from alignment at L-elsbetiae_contig15208:3386..4143+ (Laminarionema elsbetiae ELsaHSoW15)
TGTAAATGCTACCTTGAATGACCAGTTAGAGTGACGTCAACAGACGAGTC
AGCCAAGATCGTATATCTTGGCCGGAGTATCACAGATCGAGTCAGTACCT
ATTCCTCCGCTTCCTGGGAACGTTCTAGGAACGCGAAGAGTTCTTGCCTC
TCTGAAGGCAACTGCTGGCTCTACACCCGAGCCCACTTGGTGTATCCTCT
ACACCAAACCCACAAGAAGAGAACCACGCCGGCAGAACCTAGAGAGGGCT
CATTCCCCTCATAGTGGCGTCGACCTCGATACAAAACGCAGGCGTTTGTT
CTCGTACAGCTTGGTTGGAAACATTCAACCGAATCATGGGGCGTAAGAAG
CCCCAGAAGCCCCCGGACACTGAGTCCGAACAAGTAGATCCTGTGGTGGA
CTACGAAAAGGAGGACAGCGACAACGAGAACGCAAAGGAAGACGACAAGT
CGTCTAGTGACGGGGAAAGCAGCGACGAAGACCCGTCGCCTGCTGCTGAC
GGCCGTGCCGCCAGCTCTCCCCGTACCCCCGCTTCCGACAGCCGTGCTGT
CAACGCGTCGTCCGACGAGTTGCTGACCCCGATGTCCGAAGAAGATCTCG
AGGCCCTCCTCTACAAGGAGGAGTTGCAGCAGCACATCGTGGCAGCACGA
GAGGGTCGTACACCCATCCCCTTCAGGCGCAGCTTGTTGGCGCGGGCGGA
TGCAGCAGCGGCCAAACGTGAAGTGGCCCTCCAAACTGTAAGTGGAAAAG
GAAATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15208:3386..4143+

>mRNA_L-elsbetiae_contig15208.3718.1 ID=mRNA_L-elsbetiae_contig15208.3718.1|Name=mRNA_L-elsbetiae_contig15208.3718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig15208:3386..4143+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCGTAAGAAGCCCCAGAAGCCCCCGGACACTGAGTCCGAACAAGT
AGATCCTGTGGTGGACTACGAAAAGGAGGACAGCGACAACGAGAACGCAA
AGGAAGACGACAAGTCGTCTAGTGACGGGGAAAGCAGCGACGAAGACCCG
TCGCCTGCTGCTGACGGCCGTGCCGCCAGCTCTCCCCGTACCCCCGCTTC
CGACAGCCGTGCTGTCAACGCGTCGTCCGACGAGTTGCTGACCCCGATGT
CCGAAGAAGATCTCGAGGCCCTCCTCTACAAGGAGGAGTTGCAGCAGCAC
ATCGTGGCAGCACGAGAGGGTCGTACACCCATCCCCTTCAGGCGCAGCTT
GTTGGCGCGGGCGGATGCAGCAGCGGCCAAACGTGAAGTGGCCCTCCAAA
CTGTAAGTGGAAAAGGAAATTGAATGGGGCGTAAGAAGCCCCAGAAGCCC
CCGGACACTGAGTCCGAACAAGTAGATCCTGTGGTGGACTACGAAAAGGA
GGACAGCGACAACGAGAACGCAAAGGAAGACGACAAGTCGTCTAGTGACG
GGGAAAGCAGCGACGAAGACCCGTCGCCTGCTGCTGACGGCCGTGCCGCC
AGCTCTCCCCGTACCCCCGCTTCCGACAGCCGTGCTGTCAACGCGTCGTC
CGACGAGTTGCTGACCCCGATGTCCGAAGAAGATCTCGAGGCCCTCCTCT
ACAAGGAGGAGTTGCAGCAGCACATCGTGGCAGCACGAGAGGGTCGTACA
CCCATCCCCTTCAGGCGCAGCTTGTTGGCGCGGGCGGATGCAGCAGCGGC
CAAACGTGAAGTGGCCCTCCAAACTGTAAGTGGAAAAGGAAATTGA
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