mRNA_L-elsbetiae_contig1520.3712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1520.3712.1
Unique NamemRNA_L-elsbetiae_contig1520.3712.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: D8LEZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ4_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 7.970e-66
Identity = 132/180 (73.33%), Postives = 143/180 (79.44%), Query Frame = 1
Query:    7 SRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLRARLGALLSGALVEAEKRKG--GAGGLSDSGGG----TSTGTRGRSHRPSVDRDGGATQMQDEXXXXXXXTLLQDLPPLLLMARRAWLDGGHLGG 528
            SRGAAA+AGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTS+DASLILFDHWLLVEMRGRDPAL GQKLL+VACGLRARLGALLS ALVEAE+RKG  G GG    GGG    ++T T G S R +  ++G                +LQDLPPLLLMARRAW+DGG LGG
Sbjct: 1201 SRGAAANAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSEDASLILFDHWLLVEMRGRDPALNGQKLLVVACGLRARLGALLSEALVEAERRKGTGGGGGRGFPGGGVRDQSATATTGDSRRGTRGQEG-------------DDLMLQDLPPLLLMARRAWVDGGRLGG 1367          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A6H5K0I2_9PHAE (OB_NTP_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I2_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 3.250e-64
Identity = 128/175 (73.14%), Postives = 136/175 (77.71%), Query Frame = 1
Query:    7 SRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLRARLGALLSGALVEAEKRKGGAGGLSDSGGGTSTGTRGRSHRPSV--DRDGGATQMQDEXXXXXXXTLLQDLPPLLLMARRAWLDGGHLG 525
            SRGAAA+AGRGDGLLCYGQLMETQRPFVSSVTPLPALQ LLLFSARVDTS+DASLILFDHWLLVEMRGRDPAL GQKLL VACGLRARL ALLSGALVEAE+RKG  G   D GG    G R +  + +    R G   Q  D         +LQDLPPLLLMARRAW+DGG LG
Sbjct:  241 SRGAAANAGRGDGLLCYGQLMETQRPFVSSVTPLPALQTLLLFSARVDTSEDASLILFDHWLLVEMRGRDPALNGQKLLAVACGLRARLDALLSGALVEAERRKGTGG---DGGGFPGGGVRDQRAKTTTGDSRRGVRGQEGDHL-------MLQDLPPLLLMARRAWVDGGRLG 405          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A7S4D4B5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4B5_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 1.030e-13
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:   25 DAGRGDG-LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLRARL 273
            D GRG+G L+ Y +L+ETQ+ ++S +TPLPA+ ALLL S  +DTS+D   ++FDHWL V    R  A   +++L  AC LRA L
Sbjct:   96 DKGRGEGELVLYAELVETQKAYLSGITPLPAIPALLLSSRHIDTSEDCKHMMFDHWLHVSFESRSFA---KRILSTACQLRALL 176          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A1Y1V2I2_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1V2I2_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 2.670e-8
Identity = 33/73 (45.21%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   46 LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLR 264
            LLCY  L+ETQ+P++ +V  +PALQA LLFS ++DT+ D + I+ D WLL+    +  A   +K LI++  LR
Sbjct: 1031 LLCYQSLLETQKPYLVNVVRVPALQACLLFSKKIDTNLDLTRIVVDDWLLLSFTDQKEA---EKSLILSNWLR 1100          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A0G4F325_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F325_VITBC)

HSP 1 Score: 62.8 bits (151), Expect = 3.600e-8
Identity = 32/72 (44.44%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   49 LCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLR 264
            L YG L++T +PFV+ VTP+P L  LL+ ++RVDT++D SL++FD W+ V +         Q +L+VA  LR
Sbjct: 1013 LVYGSLLQTYKPFVTHVTPVPLLPLLLMAASRVDTNEDFSLLIFDGWIQVMLT--------QPMLVVAPLLR 1076          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A1Y1XDI1_9FUNG (OB_NTP_bind domain-containing protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XDI1_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-7
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   46 LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLR 264
            LLCY  L+ETQRP++ +   +PALQA LLFS ++DT+ D + ++ D WLL+       A   ++ LI++  LR
Sbjct:  198 LLCYQNLLETQRPYLVNCVRVPALQACLLFSKKIDTNLDLTKMVIDDWLLLTFMDNKEA---ERALIISNWLR 267          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A1Y1X1C2_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1X1C2_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 1.660e-7
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   46 LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLR 264
            LLCY  L+ETQRP++ +   +PALQA LLFS ++DT+ D + ++ D WLL+       A   ++ LI++  LR
Sbjct: 1061 LLCYQNLLETQRPYLVNCVRVPALQACLLFSKKIDTNLDLTKMVIDDWLLLTFMDNKEA---ERALIISNWLR 1130          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A8J9WKD3_9CHLO (Probable ATP-dependent RNA helicase DHX34 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKD3_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 5.560e-7
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query:   46 LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLRARLGALLS 288
            +L Y +L++T+R F+S++TPLPAL ALLL + RVD    AS  L D WLL+ M       +G ++ +    LRA+  ALL+
Sbjct:  893 VLAYVELLDTRRSFLSNLTPLPALPALLLTADRVDADMAASRFLVDGWLLLRMHDG----SGPQVAVEINRLRAQTSALLN 969          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A7S1X984_9CHLO (RNA helicase (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X984_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 1.090e-6
Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   55 YGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRD 216
            Y + +ET+  F+ + TP+PAL ALLL +ARVDTS D S ++ D WLL+ ++G D
Sbjct:   61 YVEALETRALFLCNNTPVPALPALLLSAARVDTSLDGSRMVVDRWLLLRIQGDD 114          
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Match: A0A3P8GL13_9TREM (OB_NTP_bind domain-containing protein n=2 Tax=Echinostoma caproni TaxID=27848 RepID=A0A3P8GL13_9TREM)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-6
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:   46 LLCYGQLMETQRPFVSSVTPLPALQALLLFSARVDTSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLRARLGALLSGALVEAEKRK 318
            LL Y  LMET RPF+ +   +PAL  LLL+S  +DT+++A+ I+FD WL V +   + A   Q+ L     LR  L  L+   L     +K
Sbjct:  123 LLMYLDLMETTRPFLVNTLRVPALPTLLLYSREIDTNENATRIVFDSWLEVNLVDIEAA---QRALATVIWLRTLLDRLMELQLTSMSNQK 210          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1520.3712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ4_ECTSI7.970e-6673.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0I2_9PHAE3.250e-6473.14OB_NTP_bind domain-containing protein n=1 Tax=Ecto... [more]
A0A7S4D4B5_HETAK1.030e-1348.81Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Y1V2I2_9FUNG2.670e-845.21p-loop containing nucleoside triphosphate hydrolas... [more]
A0A0G4F325_VITBC3.600e-844.44Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A1Y1XDI1_9FUNG1.460e-742.47OB_NTP_bind domain-containing protein n=1 Tax=Anae... [more]
A0A1Y1X1C2_9FUNG1.660e-742.47p-loop containing nucleoside triphosphate hydrolas... [more]
A0A8J9WKD3_9CHLO5.560e-743.21Probable ATP-dependent RNA helicase DHX34 n=1 Tax=... [more]
A0A7S1X984_9CHLO1.090e-650.00RNA helicase (Fragment) n=1 Tax=Tetraselmis chuii ... [more]
A0A3P8GL13_9TREM1.150e-638.46OB_NTP_bind domain-containing protein n=2 Tax=Echi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1520contigL-elsbetiae_contig1520:13444..14308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.9
Seed ortholog evalue2.5e-58
Seed eggNOG ortholog2880.D8LEZ4
Preferred nameDHX34
KEGG koko:K20101
Hectar predicted targeting categoryother localisation
GOsGO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0070035,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000622,GO:2000623
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons2
Model size557
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.9526916-CDS-L-elsbetiae_contig1520:13443..136141622815618.9526916-CDS-L-elsbetiae_contig1520:13443..13614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1520 13444..13614 +
1691682994.8870428-CDS-L-elsbetiae_contig1520:13443..136141691682994.8870428-CDS-L-elsbetiae_contig1520:13443..13614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1520 13444..13614 +
1622815618.9653175-CDS-L-elsbetiae_contig1520:13922..143061622815618.9653175-CDS-L-elsbetiae_contig1520:13922..14306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1520 13923..14306 +
1691682994.899919-CDS-L-elsbetiae_contig1520:13922..143061691682994.899919-CDS-L-elsbetiae_contig1520:13922..14306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1520 13923..14306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1520.3712.1prot_L-elsbetiae_contig1520.3712.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1520 13444..14306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1520.3712.1

>prot_L-elsbetiae_contig1520.3712.1 ID=prot_L-elsbetiae_contig1520.3712.1|Name=mRNA_L-elsbetiae_contig1520.3712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
AHSRGAAADAGRGDGLLCYGQLMETQRPFVSSVTPLPALQALLLFSARVD
TSDDASLILFDHWLLVEMRGRDPALTGQKLLIVACGLRARLGALLSGALV
EAEKRKGGAGGLSDSGGGTSTGTRGRSHRPSVDRDGGATQMQDEEEEGEE
DTLLQDLPPLLLMARRAWLDGGHLGGGGVELDRRR
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mRNA from alignment at L-elsbetiae_contig1520:13444..14308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1520.3712.1 ID=mRNA_L-elsbetiae_contig1520.3712.1|Name=mRNA_L-elsbetiae_contig1520.3712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=865bp|location=Sequence derived from alignment at L-elsbetiae_contig1520:13444..14308+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCACTCCCGCGGGGCCGCGGCGGACGCGGGGCGCGGCGACGGGTTGCT TTGCTACGGGCAGCTGATGGAGACCCAGCGGCCTTTCGTGTCGTCGGTGA CGCCGCTGCCGGCCCTGCAGGCGCTGCTGCTGTTCAGCGCCAGGGTGGAC ACGTCCGACGACGCATCACTGGTGAGGCCCCGTCTCTCTCTCTCTCTCTC TCTCCCTCTGTCCCTCCCCTTCCCCCACCCACCCACCCACCCCACCCACC CTATTTCTCCCGCTCTCTCTCTATACACACATACGTGCCTGTACCATACA TGTCTGCCATTGTTCTCGAGAACCGCCCCCTATCTCCCTTTTGAGAGAGT CGACCTGCCTGTCTGTCCGACATCGCTCGGAGGAGAACCGACCGCCCCGC CGCCCCACCGCCCGCTCCACCGCCTCTGCCCGCGCGTACGTACACACGTA CATACCCGCGCAACCCTCCCCCCCGACAGATTCTATTCGACCATTGGTTG CTCGTCGAGATGAGAGGCAGGGACCCAGCTCTCACCGGCCAGAAGCTCCT CATCGTGGCCTGCGGCCTGAGGGCGCGGCTGGGCGCCCTCCTCTCGGGTG CGCTCGTCGAGGCCGAGAAGCGGAAAGGCGGGGCCGGCGGACTGTCCGAT TCAGGCGGGGGGACTAGTACCGGTACGCGCGGCCGAAGCCACCGGCCCTC GGTCGATCGGGACGGGGGGGCGACGCAAATGCAAGACGAAGAAGAAGAAG GAGAAGAAGACACTCTGCTGCAGGACTTGCCGCCGCTGTTGCTGATGGCG AGGAGGGCGTGGCTGGATGGTGGTCACCTGGGCGGTGGGGGCGTGGAGCT GGACCGGAGAAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1520:13444..14308+

>mRNA_L-elsbetiae_contig1520.3712.1 ID=mRNA_L-elsbetiae_contig1520.3712.1|Name=mRNA_L-elsbetiae_contig1520.3712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig1520:13444..14308+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCACTCCCGCGGGGCCGCGGCGGACGCGGGGCGCGGCGACGGGTTGCT
TTGCTACGGGCAGCTGATGGAGACCCAGCGGCCTTTCGTGTCGTCGGTGA
CGCCGCTGCCGGCCCTGCAGGCGCTGCTGCTGTTCAGCGCCAGGGTGGAC
ACGTCCGACGACGCATCACTGGCGCACTCCCGCGGGGCCGCGGCGGACGC
GGGGCGCGGCGACGGGTTGCTTTGCTACGGGCAGCTGATGGAGACCCAGC
GGCCTTTCGTGTCGTCGGTGACGCCGCTGCCGGCCCTGCAGGCGCTGCTG
CTGTTCAGCGCCAGGGTGGACACGTCCGACGACGCATCACTGATTCTATT
CGACCATTGGTTGCTCGTCGAGATGAGAGGCAGGGACCCAGCTCTCACCG
GCCAGAAGCTCCTCATCGTGGCCTGCGGCCTGAGGGCGCGGCTGGGCGCC
CTCCTCTCGGGTGCGCTCGTCGAGGCCGAGAAGCGGAAAGGCGGGGCCGG
CGGACTGTCCGATTCAGGCGGGGGGACTAGTACCGGTACGCGCGGCCGAA
GCCACCGGCCCTCGGTCGATCGGGACGGGGGGGCGACGCAAATGCAAGAC
GAAGAAGAAGAAGGAGAAGAAGACACTCTGCTGCAGGACTTGCCGCCGCT
GTTGCTGATGGCGAGGAGGGCGTGGCTGGATGGTGGTCACCTGGGCGGTG
GGGGCGTGGAGCTGGACCGGAGAAGAATTCTATTCGACCATTGGTTGCTC
GTCGAGATGAGAGGCAGGGACCCAGCTCTCACCGGCCAGAAGCTCCTCAT
CGTGGCCTGCGGCCTGAGGGCGCGGCTGGGCGCCCTCCTCTCGGGTGCGC
TCGTCGAGGCCGAGAAGCGGAAAGGCGGGGCCGGCGGACTGTCCGATTCA
GGCGGGGGGACTAGTACCGGTACGCGCGGCCGAAGCCACCGGCCCTCGGT
CGATCGGGACGGGGGGGCGACGCAAATGCAAGACGAAGAAGAAGAAGGAG
AAGAAGACACTCTGCTGCAGGACTTGCCGCCGCTGTTGCTGATGGCGAGG
AGGGCGTGGCTGGATGGTGGTCACCTGGGCGGTGGGGGCGTGGAGCTGGA
CCGGAGAAGA
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