mRNA_L-elsbetiae_contig152.3709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig152.3709.1 vs. uniprot
Match: A0A6H5J9Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z1_9PHAE) HSP 1 Score: 1091 bits (2822), Expect = 0.000e+0 Identity = 644/883 (72.93%), Postives = 687/883 (77.80%), Query Frame = 2 Query: 599 SFVSRISEYFMRWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAKVGKRKPSLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG------YMQSNGG-----------AXXTGGAGAGFAMSGLHQ-TAPSSGSSRLFSDGGVDGXXXXXXXXXXXSSR--VNPGXXXXXXXXXXXXXXXXXXISLSGIAAAXXXXXXXXGRSPPASADMIFGG-------RRMDARGYG-EHGGLIRTASGPPLGGAQRAATLGGSLVKGEM-PRVVGEEES---LRKRPRESWSGLGAPAGPAALTIKTG-RGSGRGSPAARGSFSGSPAGGGLTTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETERSGFFGPILGMFEKQTVTHNKMFLYRQMQPQLWPVR-DRGWNGGAGGGETTQLRSAWLFNDPCTGQWTIALDYKSQPSSPIYKYNVPPECIRQGTPCMDLNTFNANSIKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMSESLHLPDNSDRYAAEVFDAQRAEILAFFLVGICEDPLDRVVRREHYLTFMEWFVYTLPHVALPVKIWRMYRALNDDNIPFVSFPLSEDKSAFYSHRQAMSGPAVPGRFSFRFSRKPSCVTVDYTVQDSAVEGRPQAKVVSHRFKISAIDVRGVMLRSEDLLLRGDGQVTQGRMLEETSLVQGPVENGGSGXXXXXXXXXXXXXXXX--SVPNGGHHESGLGELATWSLERIIAQVDMEENG 3139 SFVSRIS++FM+WKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAKVGKRKPS+LA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++ S+ A GG G F M GL Q AP+SGSS+LFSDG G +R V+PG GI G +SA M FGG R G + GG+ T G ++R GG + G R V EE + + GLG PAGP LT+KTG RGSGR ++G S PAGG L+TPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETE+SGFFG +LGMFEKQTVTHNKMFLYRQMQ Q WPVR DRGWNGG G ET Q+RSAWLFNDPCTGQWTIALDY+SQPSSPIY+YN+PPE IRQGTPCMD NTFN NS+KVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSM+ESLHL D SDRYAAEVFD+QR EIL+FFLVGICEDP DRVVRREHYL FMEWFVYTLP VALPVKIWRMYRAL DDNIPFVSFPLS+DKSAFYSHRQAMSGPA+PGRFSFRFSR+PSC+TVDYTVQ AVEGRPQA V+S+R KISAIDVRGVMLR E+LLLRGD QV QGR+LEETSLVQGPVENGG GXXXXXXXXXXXXXXXX NG HE GLG L SLER+IAQVDMEE+G Sbjct: 44 SFVSRISDWFMKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAKVGKRKPSILAAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQGKQMLLMQEWVPSDAAPPRVMSACLPLAQPDGGGGH-FGMPGLQQQAAPASGSSQLFSDGSSGGGAIDPNGMAVGGARGGVSPGLVGGGGAPY----------DAHGIDDGIPGLSPSPGSGRGSSASMTFGGGXXXXXXXXXXXRPDGVDEGGVGATPGRRAAGRSRRGRGEGGDVEGGGRGARGVVEEAAEGIMEVTMMSVLCGLGDPAGPG-LTVKTGGRGSGRAGGQSQGPAS--PAGG-LSTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETMQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYIRQGTPCMDPNTFNTNSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRGEILSFFLVGICEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGGGGXXXXXXXXXXXXXXXXXSGSQNGAQHEPGLGPLG--SLERVIAQVDMEESG 909
BLAST of mRNA_L-elsbetiae_contig152.3709.1 vs. uniprot
Match: D7FLC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC4_ECTSI) HSP 1 Score: 1087 bits (2812), Expect = 0.000e+0 Identity = 612/862 (71.00%), Postives = 648/862 (75.17%), Query Frame = 2 Query: 1433 LIRTASGPPLGGAQRAATLGGSLVKGEMPRVVG--EEESLRKRPRESWSGLGAPAGPAALTIKTG-RGSGRGSPAARGSFSGSPAGGGLTTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETERSGFFGPILGMFEKQTVTHNKMFLYRQMQPQLWPVR-DRGWNGGAGGGETTQLRSAWLFNDPCTGQWTIALDYKSQPSSPIYKYNVPPECIRQGTPCMDLNTFNANSIKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMSESLHLPDNSDRYAAEVFDAQRAEILAFFLVGICEDPLDRVVRREHYLTFMEWFVYTLPHVALPVKIWRMYRALNDDNIPFVSFPLSEDKSAFYSHRQAMSGPAVPGRFSFRFSRKPSCVTVDYTVQDSAVEGRPQAKVVSHRFKISAIDVRGVMLRSEDLLLRGDGQVTQGRMLEETSLVQGPVENGGSGXXXXXXXXXXXXXXXXSVP--NGGHHESGLGELATWSLERIIAQVDMEENGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWTDMFQGMTVELAQEQAAQIH-----------------------------------------HGQQRGSSSDGNGGRPGDHDQHRMADQRLRGSGXXXXXXXXXXXXXXXXXXXXTQSFSQQHGEEAIRACSSYMCGPGGGRMSVQTGDTLSFFDDPPQGNHTQQQLAGAGGPGHGGSMNLEYVEFPNFHELLVFFGRTLTERYDTSREEQETIPSPMYMHNMDD 3877 ++R SGPPL AQRAA LGG +VKGE+ R G +EESLRKRPRESWSGLG PAGP LT+KTG RGSGR ++G S PAGG L+TPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETE+SGFFG +LGMFEKQTVTHNKMFLYRQMQ Q WPVR DRGWNGG G ETTQ+RSAWLFNDPCTGQWTIALDY+SQPSSPIY+YN+PPE RQGTPCMD +TFN NS+KVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSM+ESLHL D SDRYAAEVFD+QRAEIL+FFLVGI EDP DRVVRREHYL FMEWFVYTLP VALPVKIWRMYRAL DDNIPFVSFPLS+DKSAFYSHRQAMSGPA+PGRFSFRFSR+PSC+TVDYTVQ AVEGRPQA V+S+R KISAIDVRGVMLR E+LLLRGD QV QGR+LEETSLVQGPVENG XXXXXXXXXXXXXXXX NG HE+GLG L SLER+IAQVDMEE+G XXXXXXXXXXXXX GWTDMFQGMTVELAQEQAAQ+H H R G+GG PG D+R FSQQHG SSYMCGP GRMSVQTGDTLSFFDDPPQGN Q QL G GHGG+MNLEYVEFPNFHELLVFFGRTLTERYDTSREEQETIPSPMYMHNMD+ Sbjct: 1 MMRAGSGPPLDAAQRAA-LGGGVVKGEISRAAGAGQEESLRKRPRESWSGLGDPAGPG-LTVKTGGRGSGRAGGQSQGPAS--PAGG-LSTPGGKKDRVPNHWWELELTAEGPMLYPTSNCHEWTSDNGIEHRIMEIEFQHGCEVKPPKDRLIKDFTLNWRPNSDIVYVFETEQSGFFGLVLGMFEKQTVTHNKMFLYRQMQAQPWPVRGDRGWNGGGGPAETTQMRSAWLFNDPCTGQWTIALDYQSQPSSPIYQYNLPPEYTRQGTPCMDPSTFNGNSVKVKGCTTLIPPIEVLLLSENSVREVCGAVWVGCFTANPPEVAFDLLCRLMSMTESLHLTDESDRYAAEVFDSQRAEILSFFLVGIYEDPADRVVRREHYLAFMEWFVYTLPQVALPVKIWRMYRALRDDNIPFVSFPLSQDKSAFYSHRQAMSGPAIPGRFSFRFSRQPSCITVDYTVQARAVEGRPQATVMSYRIKISAIDVRGVMLRIENLLLRGDEQVAQGRVLEETSLVQGPVENGXXXXXXXXXXXXXXXXXXXXXXSQNGAQHEAGLGPLG--SLERVIAQVDMEESGDSGAGVSRQEHARPPVHGGYPNSRGGSTGSXXXXXXXXXXXXX------------------GWTDMFQGMTVELAQEQAAQLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHQGGRQGQRVGDGGMPGG-----KGDRR-----------------------GGAPQFSQQHGGPGPSTSSSYMCGPAVGRMSVQTGDTLSFFDDPPQGNQVQHQLPVGGAAGHGGAMNLEYVEFPNFHELLVFFGRTLTERYDTSREEQETIPSPMYMHNMDE 809
BLAST of mRNA_L-elsbetiae_contig152.3709.1 vs. uniprot
Match: D7FLC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC3_ECTSI) HSP 1 Score: 207 bits (527), Expect = 1.660e-58 Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 2 Query: 629 MRWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAK 919 M+WKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAK Sbjct: 1 MKWKVRPDVVLRGRHENKSKGALSAFWQDYKKVRVDWRARAGMRRDHFELALQHYMRIDGPSRDTCEGRIRYIWETRIRDNSHLGVVDVSCQPAKAK 97 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig152.3709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig152.3709.1 >prot_L-elsbetiae_contig152.3709.1 ID=prot_L-elsbetiae_contig152.3709.1|Name=mRNA_L-elsbetiae_contig152.3709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1126bp MRSGRPLLEDGGAGSGSKNKHNGGGGGGGDGDSFVSRISEYFMRWKVRPDback to top mRNA from alignment at L-elsbetiae_contig152:32727..53817- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig152.3709.1 ID=mRNA_L-elsbetiae_contig152.3709.1|Name=mRNA_L-elsbetiae_contig152.3709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=21091bp|location=Sequence derived from alignment at L-elsbetiae_contig152:32727..53817- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig152:32727..53817- >mRNA_L-elsbetiae_contig152.3709.1 ID=mRNA_L-elsbetiae_contig152.3709.1|Name=mRNA_L-elsbetiae_contig152.3709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6756bp|location=Sequence derived from alignment at L-elsbetiae_contig152:32727..53817- (Laminarionema elsbetiae ELsaHSoW15)back to top |