mRNA_L-elsbetiae_contig15172.3696.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15172.3696.1
Unique NamemRNA_L-elsbetiae_contig15172.3696.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: Q4LDE6_9PHAE (Vanadium-dependent iodoperoxidase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q4LDE6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.510e-22
Identity = 65/127 (51.18%), Postives = 76/127 (59.84%), Query Frame = 3
Query:  246 LLGLLRPAAAGAGDCMDSS------VCVDSSLDLIDTPLERARRARQLREDLAQTEFLASRETCQDGSNGDFSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDICEAVPKGDPSGRLVNPPG 608
            L G +  AA+ + D +  S      V  D +LD+  TP ERA  A   R + A+TEF AS  T    +NGD SSAA FHK+LPHD LGQV  E FD L+ECI Q DFD CE VP GD  GRL NP G
Sbjct:   37 LSGGVDTAASPSKDTLKGSLSRKLQVVNDDALDVSGTPAERAANALNQRIEFAETEFTASEGTLH-LNNGDRSSAATFHKSLPHDSLGQVNSEDFDLLMECIAQGDFDTCELVPAGD-DGRLSNPLG 161          
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 102 bits (255), Expect = 7.240e-22
Identity = 53/99 (53.54%), Postives = 64/99 (64.65%), Query Frame = 3
Query:  312 DSSLDLIDTPLERARRARQLREDLAQTEFLASRETCQDGSNGDFSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDICEAVPKGDPSGRLVNPPG 608
            D + D+  TP ERA  A   R D A+TEFLAS +   +   GDFSSAA FHK+LPHDELGQV    F+ L+EC+   DFD C+ VP G+  G LVNP G
Sbjct:   58 DDAFDVNGTPAERAANALMERTDWAETEFLASEDVFHENL-GDFSSAATFHKSLPHDELGQVFSFDFEELIECVASGDFDTCQEVPAGNVEGFLVNPLG 155          
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: B7ZGM6_9PHAE (Putative vanadium-dependent iodoperoxidase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 9.510e-22
Identity = 59/100 (59.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  303 VCVDSSLDLIDTPLERARRARQLREDLAQTEFLASRETCQDGSNGDFSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDICEAVPKGDPSGRLVNP 602
            V  D +LD+  TP ERA  A   R +LA+TEF AS E     +NGD SSAA FHK+LPHD LGQV   AF+ L ECI Q DFDICE VP GD  GRL NP
Sbjct:   62 VANDDALDVNGTPAERAANALAQRIELAETEFAAS-EGLFHVNNGDRSSAATFHKSLPHDSLGQVDSAAFEALTECIAQGDFDICELVPAGD-VGRLSNP 159          
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 83.2 bits (204), Expect = 4.690e-15
Identity = 55/139 (39.57%), Postives = 68/139 (48.92%), Query Frame = 3
Query:  186 EEESSGFQDEANKHLCRPFGLLGLLRPAAAGAGDCMDSSVCVDSSLDLIDTPLERARRARQLREDLAQTEFLASRETCQDGSNGDFSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDICEAVPKGDPSGRLVNP 602
            E  +SG   E +KH                G G  + +    D +LD    P  R   A   R D A+ E   +   CQ  +NG+   A  FHK+LPHDELGQV  + F  L +CI   DF ICE VP GDP+GRLVNP
Sbjct:  103 EVTASGVFPEEHKHT---------------GEGRHLQTCTNSDDALDPT-APNRRDNVAFASRRDAARRERDGTGTVCQI-TNGETDLATMFHKSLPHDELGQVTADDFAILEDCILNGDFSICEDVPAGDPAGRLVNP 224          
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 75.9 bits (185), Expect = 1.480e-12
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 3
Query:  339 PLERARRARQLREDLAQTEFLASRETCQDGSNGDFSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDICEAVP----KGDPSGRLVNP 602
            P ER   A   R   A+ E   +   CQ  +NG+   AA+FHK+LPHD+LGQV  +AF  L +CI   D  ICE VP    +GDP GRLVNP
Sbjct:   15 PNERDDEAFASRVAAAKRELEGTGTVCQI-NNGETDLAAKFHKSLPHDDLGQVDADAFAALEDCILNGDLSICEDVPVGNSEGDPVGRLVNP 105          
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: K7ZUA3_ASCNO (Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=K7ZUA3_ASCNO)

HSP 1 Score: 65.5 bits (158), Expect = 5.740e-9
Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  291 MDSSVC-VDSSLDLIDTPLERARRARQLREDLAQTEFLASRETCQDGSNGDFSSA----ARFHKTLPHDELGQVLPEAFDTLVECITQADFDICEAVPKG-DPSGR-LVNPPG 608
            +  SVC V  ++D + +P +RA+   + R  +A  E LA   TC   +NGD ++      +FHK+LPHD++G+V PEA+  L++CI   D ++C+ VP G +  GR LVNP G
Sbjct:   36 LSGSVCRVRDTVDFL-SPTKRAKITFKRRIGIAAGE-LAVGPTCH-LNNGDEANVPLFDGQFHKSLPHDDVGRVNPEAYQLLLDCIESNDINVCDQVPSGVESDGRKLVNPLG 145          
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: A0A7S4QJ89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QJ89_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 8.800e-6
Identity = 38/115 (33.04%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  285 DCMDSSVCVDSSLDLIDTPLERARRARQLREDLAQTEFLAS---RETCQDGS---NGDFSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDIC-EAVPKGDPSGRLVNPPG 608
            D  +  V +D S++   +P ER +  R++  +L ++E +      ET  D     N DF     FHKTLP +E G+V+PE ++  ++C+   D  +C + +P G  SG L+NP G
Sbjct:  102 DWDEQCVTLDQSMNPY-SPKERIKYTREMTMELMESEAVDECTLHETNGDEERYKNSDFPYIGNFHKTLPTNEYGEVIPEEYENFLQCVKSGDVVVCNDVLPDG--SG-LLNPIG 212          
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: A0A7S4URD4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4URD4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.120e-5
Identity = 25/58 (43.10%), Postives = 36/58 (62.07%), Query Frame = 3
Query:  432 NGDFSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDIC-EAVPKGDPSGRLVNP 602
            N DF     FHKTLP +E G+V+PE ++ L++CI   D ++C + +P    S RL NP
Sbjct:   94 NSDFPYIGNFHKTLPTNEYGEVIPEEYENLLKCIESGDVEVCVDVLPD---SSRLANP 148          
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Match: UPI001F38F3E0 (vanadium-dependent haloperoxidase n=1 Tax=Saccharothrix sp. S26 TaxID=2907215 RepID=UPI001F38F3E0)

HSP 1 Score: 53.1 bits (126), Expect = 8.440e-5
Identity = 26/64 (40.62%), Postives = 37/64 (57.81%), Query Frame = 3
Query:  411 ETCQDGSNGDFSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDICEAVPKGDPSGRLVNP 602
            E   +G  GD+   A F K LPHDE+G+V PEA++TL+  +     +  E +P G P  +L NP
Sbjct:   26 EHVNNGEEGDYPYVANFSKGLPHDEVGEVRPEAYNTLLRALATGRPEDFERIPVG-PGVKLTNP 88          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15172.3696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Q4LDE6_9PHAE1.510e-2251.18Vanadium-dependent iodoperoxidase 1 n=1 Tax=Lamina... [more]
A0A3G3BM28_SACJA7.240e-2253.54Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
B7ZGM6_9PHAE9.510e-2259.00Putative vanadium-dependent iodoperoxidase 3 n=1 T... [more]
O82433_FUCDI4.690e-1539.57Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
PRXV_ASCNO1.480e-1247.83Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
K7ZUA3_ASCNO5.740e-939.82Vanadium-dependent bromoperoxidase 2 n=1 Tax=Ascop... [more]
A0A7S4QJ89_9STRA8.800e-633.04Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4URD4_9STRA1.120e-543.10Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
UPI001F38F3E08.440e-540.63vanadium-dependent haloperoxidase n=1 Tax=Saccharo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15172contigL-elsbetiae_contig15172:1473..2754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog2880.D8LTP5
Hectar predicted targeting categoryother localisation
EggNOG OGs2EKT6@1,2SQKZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size608
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15172.3696.1prot_L-elsbetiae_contig15172.3696.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15172 1763..2754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.5024025-UTR-L-elsbetiae_contig15172:1472..17621622815617.5024025-UTR-L-elsbetiae_contig15172:1472..1762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15172 1473..1762 +
1691682994.0245621-UTR-L-elsbetiae_contig15172:1472..17621691682994.0245621-UTR-L-elsbetiae_contig15172:1472..1762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15172 1473..1762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.5139449-CDS-L-elsbetiae_contig15172:1762..18101622815617.5139449-CDS-L-elsbetiae_contig15172:1762..1810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15172 1763..1810 +
1691682994.033821-CDS-L-elsbetiae_contig15172:1762..18101691682994.033821-CDS-L-elsbetiae_contig15172:1762..1810Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15172 1763..1810 +
1622815617.5278723-CDS-L-elsbetiae_contig15172:2243..23991622815617.5278723-CDS-L-elsbetiae_contig15172:2243..2399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15172 2244..2399 +
1691682994.0417287-CDS-L-elsbetiae_contig15172:2243..23991691682994.0417287-CDS-L-elsbetiae_contig15172:2243..2399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15172 2244..2399 +
1622815617.542409-CDS-L-elsbetiae_contig15172:2640..27541622815617.542409-CDS-L-elsbetiae_contig15172:2640..2754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15172 2641..2754 +
1691682994.0496724-CDS-L-elsbetiae_contig15172:2640..27541691682994.0496724-CDS-L-elsbetiae_contig15172:2640..2754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15172 2641..2754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15172.3696.1

>prot_L-elsbetiae_contig15172.3696.1 ID=prot_L-elsbetiae_contig15172.3696.1|Name=mRNA_L-elsbetiae_contig15172.3696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MDSSVCVDSSLDLIDTPLERARRARQLREDLAQTEFLASRETCQDGSNGD
FSSAARFHKTLPHDELGQVLPEAFDTLVECITQADFDICEAVPKGDPSGR
LVNPPG
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mRNA from alignment at L-elsbetiae_contig15172:1473..2754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15172.3696.1 ID=mRNA_L-elsbetiae_contig15172.3696.1|Name=mRNA_L-elsbetiae_contig15172.3696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1282bp|location=Sequence derived from alignment at L-elsbetiae_contig15172:1473..2754+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCGCCATCCAACCAGAGCTCCAACCACCGCGCTAAACCCGTCGGGTGC CGTTCTCGAGGCTTTGTGGTTAGTGGAACGCTCTGCTTTCATTCTCTCCT AGTCTGTCCCAGTCACTCGCATCTCCCCGCACGCCTACAATAACCAGGCC AGTTGATCCTCCGACGGTGATCTGGAAGGAGCTAAGAAGAAGAATCATCT GGTTTTCAAGATGAAGCGAACAAGCACCTCTGCCGCCCTTTCGGCTTGCT CGGACTACTGCGGCCTGCTGCTGCAGGGGCCGGAGACTGCATGGACAGCA GTGTCTGCGTCGACTCATCCCTGGATCTCATCGACACCGTGAGAAATCAA GATCTAACAAGCTTTGACGTTGGTGCCTGTACATATAGACTAGATTGGAT GCAGTTTGAACGACGACCCCCGGGCGTTTTGAACGAAAAACAAGGAGCGG TGCATAGTCTAGTTCAGATATGTAGACTGTTTCGGCTTTTCCAGAAAACG AAACGCAGACACCAAGCACGCTTCGAAGGTGGAAACATAACCTATCTTCC CGTAAATGTCATCTAGACTACATGCCCTTTCCTGTTCTCCGAAGACAAAC CGTGATCCATCCGAAGTTTTTCCGGGGGCGTTGTTGTGCCTATGTAGATC TAGAAACTAGATTCTGCGCATTTTGCCGATTTCAAGTGCCCCTATGTAGC TTTCTTCCTGCGCTAACACGAGTCTCTTCCACTTCCTCCTATCTATCTTT CGTGTGTGCCCTATACTGCAGCCTTTGGAAAGGGCGAGGCGCGCACGCCA GCTGCGGGAAGATTTGGCACAAACAGAATTCCTAGCCTCTCGCGAAACAT GCCAGGACGGGTCCAACGGTGACTTTTCCTCTGCCGCGCGCTTCCACAAG ACACTGCCGCATGACGAACTCGGGCAGGTGAGATAGAGAGCGTCTGAACC CATGTTCGCAACATCGTGCTGTCACGACATCACTCATCATTTGAAAACAG AGAAATTCTAGATATTCATTTTCGGCATAACCCCAAGCTGGTTGTTGGAA AGAGGAGAGACATTCTATTATGCCGCATCGCCAGGACGCGTGCGCGAGTC AGCGGTCTCTCACGACTCCTCACCCCATAGTTCCACCCACACGCCCTTCT TTACGGCGCGGCGCGCAGGTGCTTCCAGAGGCGTTCGACACGCTCGTGGA GTGCATCACTCAAGCCGACTTTGACATTTGCGAGGCCGTTCCGAAGGGAG ACCCCAGCGGCCGCCTAGTTAATCCACCGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15172:1473..2754+

>mRNA_L-elsbetiae_contig15172.3696.1 ID=mRNA_L-elsbetiae_contig15172.3696.1|Name=mRNA_L-elsbetiae_contig15172.3696.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig15172:1473..2754+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAGCAGTGTCTGCGTCGACTCATCCCTGGATCTCATCGACACCAT
GGACAGCAGTGTCTGCGTCGACTCATCCCTGGATCTCATCGACACCCCTT
TGGAAAGGGCGAGGCGCGCACGCCAGCTGCGGGAAGATTTGGCACAAACA
GAATTCCTAGCCTCTCGCGAAACATGCCAGGACGGGTCCAACGGTGACTT
TTCCTCTGCCGCGCGCTTCCACAAGACACTGCCGCATGACGAACTCGGGC
AGCCTTTGGAAAGGGCGAGGCGCGCACGCCAGCTGCGGGAAGATTTGGCA
CAAACAGAATTCCTAGCCTCTCGCGAAACATGCCAGGACGGGTCCAACGG
TGACTTTTCCTCTGCCGCGCGCTTCCACAAGACACTGCCGCATGACGAAC
TCGGGCAGGTGCTTCCAGAGGCGTTCGACACGCTCGTGGAGTGCATCACT
CAAGCCGACTTTGACATTTGCGAGGCCGTTCCGAAGGGAGACCCCAGCGG
CCGCCTAGTTAATCCACCGGGCGTGCTTCCAGAGGCGTTCGACACGCTCG
TGGAGTGCATCACTCAAGCCGACTTTGACATTTGCGAGGCCGTTCCGAAG
GGAGACCCCAGCGGCCGCCTAGTTAATCCACCGGGC
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