mRNA_L-elsbetiae_contig1517.3694.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1517.3694.1
Unique NamemRNA_L-elsbetiae_contig1517.3694.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1517.3694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1517contigL-elsbetiae_contig1517:11678..12423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size746
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.3606846-UTR-L-elsbetiae_contig1517:11677..119701622815617.3606846-UTR-L-elsbetiae_contig1517:11677..11970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1517 11678..11970 +
1691682993.9412422-UTR-L-elsbetiae_contig1517:11677..119701691682993.9412422-UTR-L-elsbetiae_contig1517:11677..11970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1517 11678..11970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.3709733-CDS-L-elsbetiae_contig1517:11970..124231622815617.3709733-CDS-L-elsbetiae_contig1517:11970..12423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 11971..12423 +
1691682993.952093-CDS-L-elsbetiae_contig1517:11970..124231691682993.952093-CDS-L-elsbetiae_contig1517:11970..12423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 11971..12423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1517.3694.1prot_L-elsbetiae_contig1517.3694.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1517 11971..12423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1517.3694.1

>prot_L-elsbetiae_contig1517.3694.1 ID=prot_L-elsbetiae_contig1517.3694.1|Name=mRNA_L-elsbetiae_contig1517.3694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MEHLKLESWKKFASLTCLERLWFLLVVRSTVNDAHLVGTLLESWVRVPVH
SLAAIGVTSGCLASGVLTCLKLRATHSRGRRWTQQSDMLPVEFLTKLRFQ
PPALLYPTGGPEMCLAVFFKRVCFFVLSVLSVLFLVRYPFSFCCIGGPDR
R
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mRNA from alignment at L-elsbetiae_contig1517:11678..12423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1517.3694.1 ID=mRNA_L-elsbetiae_contig1517.3694.1|Name=mRNA_L-elsbetiae_contig1517.3694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=746bp|location=Sequence derived from alignment at L-elsbetiae_contig1517:11678..12423+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTGGAGGGTGGGTGGCCGGGTTGTAAGCTTCGAACCGCGTCAGGGGTT
CTTTGGGGGTGTGCTGGAATTTATCATGGGAGCGTGAAATTATTCCACCG
TGTCGTCACCGTGAAGATCTACAACCTTTCGAAGGCGGGAGCGAGTAGTC
TAGGATCCATACGGTATACTAAACGGTTTCACGAGTAAGTGGATGGAGAG
GTTGAAACTAAGTCACGGAAACTAACCTCCCGAGTAGCACCAACAATCCC
TGCAGGTGTATCGGGCGCTTAAATCGGGAGTTTCAGCTGTTTCATGGAGC
ACCTGAAATTGGAAAGCTGGAAAAAGTTTGCTTCCTTAACATGTTTGGAA
CGCCTTTGGTTTTTGCTCGTTGTCAGATCGACGGTAAATGATGCACACCT
CGTGGGGACTCTGTTGGAGTCATGGGTACGCGTTCCCGTGCATTCGCTGG
CGGCAATCGGTGTAACGAGTGGTTGCCTCGCGAGTGGTGTTTTAACTTGC
CTAAAACTGCGTGCGACGCATTCAAGAGGGAGGAGGTGGACGCAGCAAAG
CGATATGTTGCCGGTTGAATTCTTGACTAAACTCCGTTTTCAACCCCCCG
CACTACTGTACCCCACCGGGGGACCGGAGATGTGTTTGGCTGTTTTTTTT
AAGCGTGTCTGTTTTTTTGTTTTGTCGGTACTTTCCGTGTTGTTTCTTGT
CCGATATCCTTTTTCCTTTTGCTGCATTGGTGGGCCCGACCGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1517:11678..12423+

>mRNA_L-elsbetiae_contig1517.3694.1 ID=mRNA_L-elsbetiae_contig1517.3694.1|Name=mRNA_L-elsbetiae_contig1517.3694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig1517:11678..12423+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCACCTGAAATTGGAAAGCTGGAAAAAGTTTGCTTCCTTAACATG
TTTGGAACGCCTTTGGTTTTTGCTCGTTGTCAGATCGACGGTAAATGATG
CACACCTCGTGGGGACTCTGTTGGAGTCATGGGTACGCGTTCCCGTGCAT
TCGCTGGCGGCAATCGGTGTAACGAGTGGTTGCCTCGCGAGTGGTGTTTT
AACTTGCCTAAAACTGCGTGCGACGCATTCAAGAGGGAGGAGGTGGACGC
AGCAAAGCGATATGTTGCCGGTTGAATTCTTGACTAAACTCCGTTTTCAA
CCCCCCGCACTACTGTACCCCACCGGGGGACCGGAGATGTGTTTGGCTGT
TTTTTTTAAGCGTGTCTGTTTTTTTGTTTTGTCGGTACTTTCCGTGTTGT
TTCTTGTCCGATATCCTTTTTCCTTTTGCTGCATTGGTGGGCCCGACCGG
CGCATGGAGCACCTGAAATTGGAAAGCTGGAAAAAGTTTGCTTCCTTAAC
ATGTTTGGAACGCCTTTGGTTTTTGCTCGTTGTCAGATCGACGGTAAATG
ATGCACACCTCGTGGGGACTCTGTTGGAGTCATGGGTACGCGTTCCCGTG
CATTCGCTGGCGGCAATCGGTGTAACGAGTGGTTGCCTCGCGAGTGGTGT
TTTAACTTGCCTAAAACTGCGTGCGACGCATTCAAGAGGGAGGAGGTGGA
CGCAGCAAAGCGATATGTTGCCGGTTGAATTCTTGACTAAACTCCGTTTT
CAACCCCCCGCACTACTGTACCCCACCGGGGGACCGGAGATGTGTTTGGC
TGTTTTTTTTAAGCGTGTCTGTTTTTTTGTTTTGTCGGTACTTTCCGTGT
TGTTTCTTGTCCGATATCCTTTTTCCTTTTGCTGCATTGGTGGGCCCGAC
CGGCGC
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