mRNA_L-elsbetiae_contig15165.3692.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15165.3692.1
Unique NamemRNA_L-elsbetiae_contig15165.3692.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15165.3692.1 vs. uniprot
Match: D7FW12_ECTSI (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW12_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.200e-12
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 EDDEAIKQHAERIVSTYISPTALGVPAALIYTSEEQRKALTAKMKRLWRKDRPK 162
            EDDEA KQHAERIV++YISP++ GVP  LIYTSE QR AL AKM+RLW K +P+
Sbjct:  254 EDDEARKQHAERIVASYISPSSSGVPG-LIYTSEAQRNALAAKMRRLWPKHKPR 306
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BLAST of mRNA_L-elsbetiae_contig15165.3692.1 vs. uniprot
Match: A0A6H5JLV2_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLV2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.580e-8
Identity = 31/45 (68.89%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 EDDEAIKQHAERIVSTYISPTALGVPAALIYTSEEQRKALTAKMK 135
            ED+EA KQHAERIV++YISP++ GVP+ +IYTSE QR AL AKM+
Sbjct:  285 EDNEARKQHAERIVASYISPSSSGVPS-MIYTSEAQRNALAAKMR 328
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15165.3692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW12_ECTSI2.200e-1270.37Cyclic nucleotide-binding domain-containing protei... [more]
A0A6H5JLV2_9PHAE8.580e-868.89Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15165contigL-elsbetiae_contig15165:247..584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.228735-CDS-L-elsbetiae_contig15165:246..5821622815617.228735-CDS-L-elsbetiae_contig15165:246..582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15165 247..582 +
1691682993.863446-CDS-L-elsbetiae_contig15165:246..5821691682993.863446-CDS-L-elsbetiae_contig15165:246..582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15165 247..582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15165.3692.1prot_L-elsbetiae_contig15165.3692.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15165 247..582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15165.3692.1

>prot_L-elsbetiae_contig15165.3692.1 ID=prot_L-elsbetiae_contig15165.3692.1|Name=mRNA_L-elsbetiae_contig15165.3692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
EDDEAIKQHAERIVSTYISPTALGVPAALIYTSEEQRKALTAKMKRLWRK
DRPKGNSNSNSNNDCNNSNNNDSDNDNHQNEETGAQKSGGNPEERQQEQE
APSDDGRGVAIA
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mRNA from alignment at L-elsbetiae_contig15165:247..584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15165.3692.1 ID=mRNA_L-elsbetiae_contig15165.3692.1|Name=mRNA_L-elsbetiae_contig15165.3692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=338bp|location=Sequence derived from alignment at L-elsbetiae_contig15165:247..584+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGATGACGAGGCGATAAAGCAGCACGCCGAGAGAATAGTCTCCACCTA
CATCTCCCCCACCGCCTTGGGGGTTCCGGCTGCCCTAATCTACACCTCCG
AAGAACAGCGAAAAGCCTTGACAGCAAAGATGAAGCGGTTGTGGCGCAAA
GATAGACCGAAGGGCAACAGCAACAGCAACAGCAACAACGATTGCAACAA
CAGCAACAACAACGACAGCGACAACGACAACCATCAAAACGAGGAGACTG
GCGCCCAGAAAAGCGGCGGCAACCCCGAGGAAAGACAGCAGGAGCAGGAA
GCGCCATCGGACGATGGCCGAGGAGTAGCAATAGCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15165:247..584+

>mRNA_L-elsbetiae_contig15165.3692.1 ID=mRNA_L-elsbetiae_contig15165.3692.1|Name=mRNA_L-elsbetiae_contig15165.3692.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig15165:247..584+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGATGACGAGGCGATAAAGCAGCACGCCGAGAGAATAGTCTCCACCTA
CATCTCCCCCACCGCCTTGGGGGTTCCGGCTGCCCTAATCTACACCTCCG
AAGAACAGCGAAAAGCCTTGACAGCAAAGATGAAGCGGTTGTGGCGCAAA
GATAGACCGAAGGGCAACAGCAACAGCAACAGCAACAACGATTGCAACAA
CAGCAACAACAACGACAGCGACAACGACAACCATCAAAACGAGGAGACTG
GCGCCCAGAAAAGCGGCGGCAACCCCGAGGAAAGACAGCAGGAGCAGGAA
GCGCCATCGGACGATGGCCGAGGAGTAGCAATAGCAGAAGATGACGAGGC
GATAAAGCAGCACGCCGAGAGAATAGTCTCCACCTACATCTCCCCCACCG
CCTTGGGGGTTCCGGCTGCCCTAATCTACACCTCCGAAGAACAGCGAAAA
GCCTTGACAGCAAAGATGAAGCGGTTGTGGCGCAAAGATAGACCGAAGGG
CAACAGCAACAGCAACAGCAACAACGATTGCAACAACAGCAACAACAACG
ACAGCGACAACGACAACCATCAAAACGAGGAGACTGGCGCCCAGAAAAGC
GGCGGCAACCCCGAGGAAAGACAGCAGGAGCAGGAAGCGCCATCGGACGA
TGGCCGAGGAGTAGCAATAGCA
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