mRNA_L-elsbetiae_contig1515.3686.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1515.3686.1
Unique NamemRNA_L-elsbetiae_contig1515.3686.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1515.3686.1 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.000e-33
Identity = 75/162 (46.30%), Postives = 102/162 (62.96%), Query Frame = 2 
Query:  209 SISGAWVLDSSRSDTFEDYLRYLGTPEDAIQAQVAGERAYQSRNVIALGNSRLVIHKDTAANERTETYQLDEEQVTRRPDG--GVNQARVSLGNQGRLDGYVVVNTTSAPCGRTALETVEARQLLEGGLAHVQQINVRRVADGGECTTARTWVRVPLTQDDQ 688
            SI GAWVL+ SRS+T E YLR +   + AI+AQ+  E+ ++SRNV A+  ++LVIHK T  N  T+ Y+LD+E++T   DG  G     VSL N G LDG V+  TTS P  +  +  VE RQLL+ G  H Q++++  +  G  C T RTWVRV +T  DQ
Sbjct:   23 SIVGAWVLEVSRSETMEGYLRCMNVADLAIEAQMKAEQDHESRNVFAIEGTKLVIHKRTKINHFTQIYELDKEKIT---DGRSGPKHCMVSLPNPGCLDGLVL--TTSMPTAQGQMHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVTPVDQ 179
[Close]
BLAST of mRNA_L-elsbetiae_contig1515.3686.1 vs. uniprot
Match: D8LID1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID1_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 3.000e-32
Identity = 75/143 (52.45%), Postives = 85/143 (59.44%), Query Frame = 2 
Query:  296 IQAQVAGERAYQSRNVIALGNSRLVIHKDTAANERTETYQLDEEQVT-----RRPDGG-------VNQARVSLGNQGRLDGYVVVNTTSAPCGRTALETVEARQLLEGGLAHVQQINVRRVADGGECTTARTWVRVPLTQDDQ 688
            ++  V GER YQSRNVIAL  S LVIHK TA N  TE ++LDEEQVT      RP  G       VNQ  VSLG   +LDGYVV  TTSAP GR  +ETVE RQL +GGL H+Q                R WVRVP+T +DQ
Sbjct:    8 LKYPVTGEREYQSRNVIALHASELVIHKKTAINNFTERFELDEEQVTPARPWNRPQHGGXXXXXXVNQVTVSLGESEQLDGYVVATTTSAPNGRPTVETVEVRQLTDGGLTHIQXXXXXXXXXXXXXXXXRVWVRVPMTHEDQ 150
[Close]
BLAST of mRNA_L-elsbetiae_contig1515.3686.1 vs. uniprot
Match: D7FJD1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJD1_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.100e-31
Identity = 70/155 (45.16%), Postives = 98/155 (63.23%), Query Frame = 2 
Query:  209 SISGAWVLDSSRSDTFEDYLRYLGTPEDAIQAQVAGERAYQSRNVIALGNSRLVIHKDTAANERTETYQLDEEQVTRRPDG-GVNQARVSLGNQGRLDGYVVVNTTSAPCGRTALETVEARQLLEGGLAHVQQINVRRVADGGECTTARTWVRVP 670
            S++GAWVLD  RSDT E YLR +G P+  ++AQ+AGE+A  SRNV+ L +SRLV+HK T+ N  TE+Y+LD+E+VT  P   G  +A  SL   GR D   +   T+ P   +    VE R+L+  G  H+Q++ +R +  G +  T RTWVR P
Sbjct:    5 SLTGAWVLDVYRSDTLEAYLRCMGAPDRVVEAQLAGEQACPSRNVLVLDDSRLVVHKHTSVNNLTESYELDQERVT--PSTYGEKRAIASLLQPGRHDALAI--KTALPTDTSDFGLVETRRLVGDGSTHIQELLLRNLDTGAQSITRRTWVREP 155
[Close]
BLAST of mRNA_L-elsbetiae_contig1515.3686.1 vs. uniprot
Match: D7G874_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G874_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 2.020e-24
Identity = 66/164 (40.24%), Postives = 88/164 (53.66%), Query Frame = 2 
Query:  209 SISGAWVLDSSRSDTFEDYLRYLGTPEDAIQAQVAGERAYQSRNVIALGNSRLVIHKDTAANERTE-TYQLDEEQVTRRPDGGVNQARVSLGNQGRLDGYVVVNTTSAPCGRTALETVEARQLLEGGLAHVQQINVRRVADGGECTTARTWVRVPLTQDDQMRL 697
            SI GAWVLD SRSDT E +LR  G PE  I+  V+ E  +   NV+ LG   + IHK T  N  TE +Y LDEE+V          + V         G+V     S   GR  +  +E R ++EGGLAH Q+I +  +  G +C T R W+RVP+T++ Q  L
Sbjct:  117 SIVGAWVLDLSRSDTMELFLRIHGMPEKHIREHVSAETLHGGFNVVGLGEDTITIHKRTCTNCYTERSYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETRHVVEGGLAHTQEIRLHNLTTGEDCVTNRVWMRVPMTEEHQAAL 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1515.3686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQR1_ECTSI1.000e-3346.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LID1_ECTSI3.000e-3252.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJD1_ECTSI2.100e-3145.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G874_ECTSI2.020e-2440.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1515contigL-elsbetiae_contig1515:21467..24740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_004100.1
Exons5
Model size1233
Cds size525
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.824086-UTR-L-elsbetiae_contig1515:21466..219931622815616.824086-UTR-L-elsbetiae_contig1515:21466..21993Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1515 21467..21993 -
1691682993.6354737-UTR-L-elsbetiae_contig1515:21466..219931691682993.6354737-UTR-L-elsbetiae_contig1515:21466..21993Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1515 21467..21993 -
1622815616.9027383-UTR-L-elsbetiae_contig1515:24559..247401622815616.9027383-UTR-L-elsbetiae_contig1515:24559..24740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1515 24560..24740 -
1691682993.7006454-UTR-L-elsbetiae_contig1515:24559..247401691682993.7006454-UTR-L-elsbetiae_contig1515:24559..24740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1515 24560..24740 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.8383682-CDS-L-elsbetiae_contig1515:21993..220981622815616.8383682-CDS-L-elsbetiae_contig1515:21993..22098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 21994..22098 -
1691682993.6473396-CDS-L-elsbetiae_contig1515:21993..220981691682993.6473396-CDS-L-elsbetiae_contig1515:21993..22098Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 21994..22098 -
1622815616.8526068-CDS-L-elsbetiae_contig1515:22949..231421622815616.8526068-CDS-L-elsbetiae_contig1515:22949..23142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 22950..23142 -
1691682993.661075-CDS-L-elsbetiae_contig1515:22949..231421691682993.661075-CDS-L-elsbetiae_contig1515:22949..23142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 22950..23142 -
1622815616.8662999-CDS-L-elsbetiae_contig1515:23532..236331622815616.8662999-CDS-L-elsbetiae_contig1515:23532..23633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 23533..23633 -
1691682993.670773-CDS-L-elsbetiae_contig1515:23532..236331691682993.670773-CDS-L-elsbetiae_contig1515:23532..23633Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 23533..23633 -
1622815616.8778014-CDS-L-elsbetiae_contig1515:23971..240351622815616.8778014-CDS-L-elsbetiae_contig1515:23971..24035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 23972..24035 -
1691682993.6797326-CDS-L-elsbetiae_contig1515:23971..240351691682993.6797326-CDS-L-elsbetiae_contig1515:23971..24035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 23972..24035 -
1622815616.8894854-CDS-L-elsbetiae_contig1515:24497..245591622815616.8894854-CDS-L-elsbetiae_contig1515:24497..24559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 24498..24559 -
1691682993.6884968-CDS-L-elsbetiae_contig1515:24497..245591691682993.6884968-CDS-L-elsbetiae_contig1515:24497..24559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 24498..24559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1515.3686.1prot_L-elsbetiae_contig1515.3686.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1515 21994..24559 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1515.3686.1

>prot_L-elsbetiae_contig1515.3686.1 ID=prot_L-elsbetiae_contig1515.3686.1|Name=mRNA_L-elsbetiae_contig1515.3686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=175bp
MANQPLHELSISGAWVLDSSRSDTFEDYLRYLGTPEDAIQAQVAGERAYQ
SRNVIALGNSRLVIHKDTAANERTETYQLDEEQVTRRPDGGVNQARVSLG
NQGRLDGYVVVNTTSAPCGRTALETVEARQLLEGGLAHVQQINVRRVADG
GECTTARTWVRVPLTQDDQMRLFS*
back to top

mRNA from alignment at L-elsbetiae_contig1515:21467..24740-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1515.3686.1 ID=mRNA_L-elsbetiae_contig1515.3686.1|Name=mRNA_L-elsbetiae_contig1515.3686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3274bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:21467..24740- (Laminarionema elsbetiae ELsaHSoW15)
GAACCACCCCAGTTGATGCAAGTCCCTTCTCATCGGTATTTCTGTTCTGC
AATGCGAACCTCAAGACAAGTCCATCTCCTCTGCTCCTCGCTTTGTATGC
ACACTAACAGCCGTCTACATAGAGTCTAGAGTGCGTACGCCGCTAGGCAT
CCTGCTCTCTCGAGGGCCAGCTTGGGAAATCATGGCCAACCAGCCCCTTC
ACGAGCTCTCCATCTCCGGTGCCTGGGTGCTGGATTCGTCACGGTGAGTC
AGAACCTTGACCTTTGCAGCAGGCGAGTTTAGTTGTGCGGTTGAAGACCA
ATAATTCTCATAATTTGGCTGCACGTGGGGTCGTCTAATATGCATACATA
CACATGTACGTCACCCGCCCCCGCGTAAGGCAACAGATCGCCCCAAGGCA
GCCTTGTGGACATGCGCAACTGCAACTAAAGCAGCCGTACGTACCTGAGC
AGACAAGGAAATGAAGCTGAATCGGCGCAGCATCCAAGTTCGCAAGCTAC
ACCAGCAGCAGTAGCGCGCCCGTCACGTCCGTCGCACGCACGCTCTTCGC
TTCGATAATTTCTTTGTAAATGGAGATCGCATGGCTTTTCTGAGACAAGA
ACAGTTCCCAAAGTAAGATGATCTCAGTTGATGTGTCTTTTAGACCGCGC
GCAATAGAAACGCAACCTAAAATGCGATAGATATGACGGTTTATTTTTTT
GTCAGGTCGGACACGTTCGAAGACTACCTGCGGTATTTAGGTACTCCCGA
AGATGCAATTCAAGCCCAGGCAAGTGGGAGGCGTCAAGCCCCATCAGAGA
GCACTCGACTGAGTTAGTTTTAACCAAACCTAATGAACGGGCAGTATGCA
CGAGACAAAATGACAGGGTATCGGAGAAGAGATCGTGAACCCAAGGCAGC
TTCAACAACTAGTCTCATCTAGTGGCAGCGATATGTGTTTTCAAGTAATG
ACAACACGGGGGGATTGCTCTAGGTTATTTGCTGCAAATTTTTTCACACC
GGAAAGTGGTCTACATAACTTCCAACGCATTGAAAGCATTGTGACACGAC
AAACGTCAAATGAACACTCAATCTAGTGGCAATGATACGTATGATGCTCT
TTCTCAGGTAGCTGGAGAAAGAGCCTACCAGAGCCGCAACGTGATCGCGC
TAGGCAACTCCAGGCTGGTCATCCACAAGGACACCGCAGCAAACGAACGC
ACCGAAACGTGAGAAGTTGCAAATACATATGTATCTGCATGCAGCCTACA
TACAGAGTCTACATGTACAGCAGTGTGTCATAGTTTTTCTCCATCTAGTC
GATGAAACCGTGCTGTTTTGTGCGTCGACACTTGCGTACTCTGTGCCCCT
CTTGAGAGATCGAGGTAGGCCGTGGTGCCCTTGGCCTGAGCGAGCACGAT
TTTTAGCCACAACAAGGGCGATCTCGAGCTCCCGACGACTACCAAAAGTG
CTTGCCTCTCGTTGCATTGGTGAAACGCCAACGCGGCGCGCTTTTGACGC
AAACCCTTTCCAGCAGCACGAGTACGCATTGGAAAAAAAACGCCCGCCTC
TTCTTTCCAACCACCTGCTTCTGCGCGGCTCAACTTCGCCCTATGTAGGT
ACCAGCTAGACGAAGAGCAAGTCACGCGCAGGCCCGATGGCGGCGTGAAT
CAGGCACGGGTGTCCCTCGGAAACCAGGGGCGGTTGGACGGCTACGTGGT
GGTCAACACCACCAGCGCGCCCTGTGGCAGAACCGCCCTGGAGACGGTGG
AAGCCCGCCAGCTTCTTGAGGGAGGACTCGCCCATGTGCAGGTGCAACAC
GCTTTGTGCTTCTTCAACGTTGATTCGGTTATAGGTAGATAGATGTAGCC
AATACTAGCAGTCGCGCGGTTGTTTGGGGTGTAGTTGTATCGAGGCATGC
GGGGGGGGGGGGGGGGGAAAACCTCTCCTTTTGGTATGAGTGAAAAGGGG
GGGGGTACAGCAGGGGAGGGCGGGCACGGCGCGCTTCGGGCCCACTTNNN
NNNNNNNTATGGTTGGGGTGTTGGGAGGGGGGGGGGAGTGGCGGAGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGTCATCCTCTCCTTTTGATATGATTGAAAAGGGGCGGTG
TACAGCAGTGAAGGGCGGGCACGCAGCTATTGCGACCAGCTTTGCGTTGT
CTGGCCCTCTCAAACGTGGAAGTCAAGTAGAGTCGCAACGGGTGCGCACT
TCTGCAGCAGACGGGCGCGTATCAACTCTCTCTGGGGGTGCCTTCAACTC
ATCTCCGCCTTTGTTCCACAAAAGGGCGTTTATCTTGTAGAGAGTATGGG
CTACGGACAACCGGCTGATCGGAGCGAGATAAACATTAGACGGACAAGTG
CTGGCAAGGGGAGCGACCCTCCCCGAAAGCGAAGGTGCCGGGTTTGTTGG
GCCCCAAGCTCATCATTTTTAGTAGCCAGAATCAAAGCGGACGGCTTCTA
CAGGAGATACAAACGCGTGCTGGTGGACAAACAAAAATAACACCCGGAAG
AAAGTGAACCGTTGGTCCTCAACCGTTGTGTGTGTGTGTGTGTGTGTGTA
CCCATCCGTCTCTTGGCCCGCGATGAACGTACTCTCCTGCAGCAAATCAA
CGTGCGGAGGGTGGCCGATGGCGGGGAGTGCACCACCGCACGCACCTGGG
TGCGTGTTCCGCTTACGCAGGACGACCAGATGCGGCTGTTTTCCTGAACG
TGAACAAGCAGACAAAGCACGTCGTTGCATATGGGGTGATCGGTACCACT
CTCCTCTTCTGCTTGAACATGGAAGATAGAGAAGACCTGTCCGCAACATG
CCATACCCCTAGAAGATTGGCAAGAGGTGTTGTTGAGAGCTACGCACCTG
GCCACCGCGTCCGTGTAGATGCTGCGCCCTAGAATATTGGCGCCACGCTG
AAGTTTGTAGAGAGAATATTTACGGGAACCCTCCCTGTTTTGCTGTCAAC
ACAAACAGTGAGTAGATACCTTTTCCCCCAGGTTTTTCCTGTTGTTCTGT
CGGTGATTTCGTATTTTATTGATGTTGAATTTTGTGCACAGCGGTAAACG
CGCCCTAAGATTGAGCGGAGTCCAGAGGAGAATCCCGGAGAGAGCGTTTC
TTGTTGTTTGTCGTCGCCGCCGTGGTAAAATATTTTAATTAATGTATACA
AATGTCAGCGTCTGCATTTTGAGTGTTTGTCGTTTTTTGTACGAAACATA
TACGGCGGGGGTGATCAACCGTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1515:21467..24740-

>mRNA_L-elsbetiae_contig1515.3686.1 ID=mRNA_L-elsbetiae_contig1515.3686.1|Name=mRNA_L-elsbetiae_contig1515.3686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1050bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:21467..24740- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAACCAGCCCCTTCACGAGCTCTCCATCTCCGGTGCCTGGGTGCT
GGATTCGTCACGATGGCCAACCAGCCCCTTCACGAGCTCTCCATCTCCGG
TGCCTGGGTGCTGGATTCGTCACGGTCGGACACGTTCGAAGACTACCTGC
GGTATTTAGGTACTCCCGAAGATGCAATTCAAGCCCAGGTCGGACACGTT
CGAAGACTACCTGCGGTATTTAGGTACTCCCGAAGATGCAATTCAAGCCC
AGGTAGCTGGAGAAAGAGCCTACCAGAGCCGCAACGTGATCGCGCTAGGC
AACTCCAGGCTGGTCATCCACAAGGACACCGCAGCAAACGAACGCACCGA
AACGTAGCTGGAGAAAGAGCCTACCAGAGCCGCAACGTGATCGCGCTAGG
CAACTCCAGGCTGGTCATCCACAAGGACACCGCAGCAAACGAACGCACCG
AAACGTACCAGCTAGACGAAGAGCAAGTCACGCGCAGGCCCGATGGCGGC
GTGAATCAGGCACGGGTGTCCCTCGGAAACCAGGGGCGGTTGGACGGCTA
CGTGGTGGTCAACACCACCAGCGCGCCCTGTGGCAGAACCGCCCTGGAGA
CGGTGGAAGCCCGCCAGCTTCTTGAGGGAGGACTCGCCCATGTGCAGGTA
CCAGCTAGACGAAGAGCAAGTCACGCGCAGGCCCGATGGCGGCGTGAATC
AGGCACGGGTGTCCCTCGGAAACCAGGGGCGGTTGGACGGCTACGTGGTG
GTCAACACCACCAGCGCGCCCTGTGGCAGAACCGCCCTGGAGACGGTGGA
AGCCCGCCAGCTTCTTGAGGGAGGACTCGCCCATGTGCAGCAAATCAACG
TGCGGAGGGTGGCCGATGGCGGGGAGTGCACCACCGCACGCACCTGGGTG
CGTGTTCCGCTTACGCAGGACGACCAGATGCGGCTGTTTTCCTGACAAAT
CAACGTGCGGAGGGTGGCCGATGGCGGGGAGTGCACCACCGCACGCACCT
GGGTGCGTGTTCCGCTTACGCAGGACGACCAGATGCGGCTGTTTTCCTGA
back to top