mRNA_L-elsbetiae_contig1515.3683.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1515.3683.1
Unique NamemRNA_L-elsbetiae_contig1515.3683.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1515.3683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1515contigL-elsbetiae_contig1515:2295..2733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size441
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.5455706-UTR-L-elsbetiae_contig1515:2294..24241622815616.5455706-UTR-L-elsbetiae_contig1515:2294..2424Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1515 2295..2424 +
1691682993.4625807-UTR-L-elsbetiae_contig1515:2294..24241691682993.4625807-UTR-L-elsbetiae_contig1515:2294..2424Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1515 2295..2424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.5597675-CDS-L-elsbetiae_contig1515:2424..27331622815616.5597675-CDS-L-elsbetiae_contig1515:2424..2733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 2425..2733 +
1691682993.4735763-CDS-L-elsbetiae_contig1515:2424..27331691682993.4735763-CDS-L-elsbetiae_contig1515:2424..2733Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1515 2425..2733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1515.3683.1prot_L-elsbetiae_contig1515.3683.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1515 2425..2733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1515.3683.1

>prot_L-elsbetiae_contig1515.3683.1 ID=prot_L-elsbetiae_contig1515.3683.1|Name=mRNA_L-elsbetiae_contig1515.3683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MTAASGSPNGSMLTPLPISSVVCGAIGEAESSTPSRSSSEAKPSSCSRPA
TGASWTILPVSGPSHPSIPSIPASVFSPEPAHRRPSAVPCGAELLYLVVG
VGA
back to top

mRNA from alignment at L-elsbetiae_contig1515:2295..2733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1515.3683.1 ID=mRNA_L-elsbetiae_contig1515.3683.1|Name=mRNA_L-elsbetiae_contig1515.3683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=439bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:2295..2733+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGACGCGGAGGAGGCCTTTGCTCGCGTGCCAGCCCGTGGGCCAGTAG
CAGATGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCGGGTGGAGGTTGA
AGTTCGCTGAGAAGGTCGTCTAGCGAGTCGATGACCGCAGCATCGGGCTC
ACCGAACGGGTCGATGTTGACGCCGTTGCCAATCTCCTCCGTAGTTTGTG
GCGCTATCGGCGAAGCAGAGTCATCGACACCGAGCAGGTCGTCTAGCGAG
GCAAAACCGTCGTCATGCTCACGTCCGGCCACCGGTGCGTCTTGGACCAT
CCTCCCAGTGTCGGGTCCATCCCATCCCTCAATTCCATCCATTCCCGCCT
CGGTATTCTCACCCGAACCAGCACACAGGCGACCGAGTGCGGTCCCATGT
GGTGCTGAGTTGCTATACCTCGTTGTTGGTGTTGGTGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1515:2295..2733+

>mRNA_L-elsbetiae_contig1515.3683.1 ID=mRNA_L-elsbetiae_contig1515.3683.1|Name=mRNA_L-elsbetiae_contig1515.3683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:2295..2733+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGCAGCATCGGGCTCACCGAACGGGTCGATGTTGACGCCGTTGCC
AATCTCCTCCGTAGTTTGTGGCGCTATCGGCGAAGCAGAGTCATCGACAC
CGAGCAGGTCGTCTAGCGAGGCAAAACCGTCGTCATGCTCACGTCCGGCC
ACCGGTGCGTCTTGGACCATCCTCCCAGTGTCGGGTCCATCCCATCCCTC
AATTCCATCCATTCCCGCCTCGGTATTCTCACCCGAACCAGCACACAGGC
GACCGAGTGCGGTCCCATGTGGTGCTGAGTTGCTATACCTCGTTGTTGGT
GTTGGTGCGATGACCGCAGCATCGGGCTCACCGAACGGGTCGATGTTGAC
GCCGTTGCCAATCTCCTCCGTAGTTTGTGGCGCTATCGGCGAAGCAGAGT
CATCGACACCGAGCAGGTCGTCTAGCGAGGCAAAACCGTCGTCATGCTCA
CGTCCGGCCACCGGTGCGTCTTGGACCATCCTCCCAGTGTCGGGTCCATC
CCATCCCTCAATTCCATCCATTCCCGCCTCGGTATTCTCACCCGAACCAG
CACACAGGCGACCGAGTGCGGTCCCATGTGGTGCTGAGTTGCTATACCTC
GTTGTTGGTGTTGGTGCG
back to top