mRNA_L-elsbetiae_contig15098.3653.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15098.3653.1
Unique NamemRNA_L-elsbetiae_contig15098.3653.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15098.3653.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15098contigL-elsbetiae_contig15098:2197..2738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_004360.1
Exons1
Model size542
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.1666727-CDS-L-elsbetiae_contig15098:2196..27361622815613.1666727-CDS-L-elsbetiae_contig15098:2196..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15098 2197..2736 +
1691682991.3866181-CDS-L-elsbetiae_contig15098:2196..27361691682991.3866181-CDS-L-elsbetiae_contig15098:2196..2736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15098 2197..2736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15098.3653.1prot_L-elsbetiae_contig15098.3653.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15098 2197..2736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15098.3653.1

>prot_L-elsbetiae_contig15098.3653.1 ID=prot_L-elsbetiae_contig15098.3653.1|Name=mRNA_L-elsbetiae_contig15098.3653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp
QLASNRTSPPGRARPIGGTGAAFRNGSGRSQAAPSTRGGGSGLFSTAASV
AAVAAATATTRTARGTGATKTGPPQKPPSPLVRGSRVLGGGGSSAGGGGG
SGGNPRDKKVGAAAAGSSAVTAGASDRSRAAPAAAAAATAPVSMAGTSGA
AAAAAAAEGGRGSGGHRGGDGERARKEGRR
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mRNA from alignment at L-elsbetiae_contig15098:2197..2738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15098.3653.1 ID=mRNA_L-elsbetiae_contig15098.3653.1|Name=mRNA_L-elsbetiae_contig15098.3653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=542bp|location=Sequence derived from alignment at L-elsbetiae_contig15098:2197..2738+ (Laminarionema elsbetiae ELsaHSoW15)
CAACTTGCGAGCAACCGGACGTCGCCTCCAGGCCGCGCGCGGCCGATCGG
GGGTACCGGCGCCGCCTTCAGAAACGGGAGCGGCCGGAGCCAAGCGGCGC
CGTCGACACGGGGCGGCGGGTCGGGCCTCTTCTCTACCGCTGCCTCTGTT
GCGGCCGTTGCTGCCGCCACCGCCACCACCCGCACCGCCAGGGGCACCGG
TGCGACGAAGACGGGCCCGCCGCAGAAGCCGCCGTCGCCGCTGGTGCGAG
GCAGCAGGGTGCTCGGCGGCGGGGGTAGCAGCGCTGGCGGCGGCGGAGGC
TCCGGTGGCAACCCCCGAGATAAGAAAGTAGGAGCGGCGGCGGCAGGGTC
ATCGGCGGTAACCGCTGGTGCAAGCGACCGGAGCAGGGCTGCTCCTGCTG
CTGCTGCTGCTGCTACCGCACCCGTCTCCATGGCTGGCACTAGCGGTGCC
GCGGCGGCTGCTGCCGCTGCTGAGGGTGGAAGGGGCTCGGGTGGACACCG
GGGCGGAGACGGCGAGAGGGCGCGGAAGGAGGGCCGGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15098:2197..2738+

>mRNA_L-elsbetiae_contig15098.3653.1 ID=mRNA_L-elsbetiae_contig15098.3653.1|Name=mRNA_L-elsbetiae_contig15098.3653.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig15098:2197..2738+ (Laminarionema elsbetiae ELsaHSoW15)
CAACTTGCGAGCAACCGGACGTCGCCTCCAGGCCGCGCGCGGCCGATCGG
GGGTACCGGCGCCGCCTTCAGAAACGGGAGCGGCCGGAGCCAAGCGGCGC
CGTCGACACGGGGCGGCGGGTCGGGCCTCTTCTCTACCGCTGCCTCTGTT
GCGGCCGTTGCTGCCGCCACCGCCACCACCCGCACCGCCAGGGGCACCGG
TGCGACGAAGACGGGCCCGCCGCAGAAGCCGCCGTCGCCGCTGGTGCGAG
GCAGCAGGGTGCTCGGCGGCGGGGGTAGCAGCGCTGGCGGCGGCGGAGGC
TCCGGTGGCAACCCCCGAGATAAGAAAGTAGGAGCGGCGGCGGCAGGGTC
ATCGGCGGTAACCGCTGGTGCAAGCGACCGGAGCAGGGCTGCTCCTGCTG
CTGCTGCTGCTGCTACCGCACCCGTCTCCATGGCTGGCACTAGCGGTGCC
GCGGCGGCTGCTGCCGCTGCTGAGGGTGGAAGGGGCTCGGGTGGACACCG
GGGCGGAGACGGCGAGAGGGCGCGGAAGGAGGGCCGGCGGCAACTTGCGA
GCAACCGGACGTCGCCTCCAGGCCGCGCGCGGCCGATCGGGGGTACCGGC
GCCGCCTTCAGAAACGGGAGCGGCCGGAGCCAAGCGGCGCCGTCGACACG
GGGCGGCGGGTCGGGCCTCTTCTCTACCGCTGCCTCTGTTGCGGCCGTTG
CTGCCGCCACCGCCACCACCCGCACCGCCAGGGGCACCGGTGCGACGAAG
ACGGGCCCGCCGCAGAAGCCGCCGTCGCCGCTGGTGCGAGGCAGCAGGGT
GCTCGGCGGCGGGGGTAGCAGCGCTGGCGGCGGCGGAGGCTCCGGTGGCA
ACCCCCGAGATAAGAAAGTAGGAGCGGCGGCGGCAGGGTCATCGGCGGTA
ACCGCTGGTGCAAGCGACCGGAGCAGGGCTGCTCCTGCTGCTGCTGCTGC
TGCTACCGCACCCGTCTCCATGGCTGGCACTAGCGGTGCCGCGGCGGCTG
CTGCCGCTGCTGAGGGTGGAAGGGGCTCGGGTGGACACCGGGGCGGAGAC
GGCGAGAGGGCGCGGAAGGAGGGCCGGCGG
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