mRNA_L-elsbetiae_contig1509.3647.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1509.3647.1
Unique NamemRNA_L-elsbetiae_contig1509.3647.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1509.3647.1 vs. uniprot
Match: D7G4Q6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q6_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 7.900e-65
Identity = 216/353 (61.19%), Postives = 236/353 (66.86%), Query Frame = 1 
Query:   58 EGAA-WPAPPPVLLVLHLFLESHRP-------------PREXXXXXXXRRVRFPGGLAYEGQLRRRERGEQGREAPHGWGRIVFPDGAFYEGTWRGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLELVTGG--ASYDGDWANDVPHGYGIHVDPAGGGERFEGRWRHGIRSGGGTLVQGWADKGQQGEKKEXXXXXXXXXXXXXXERGGVPSSEVAWYSGNFSGGYPHGDGMMMCGSMTFCGHVERGVWNGGGRIDLGEPG---LGSFEGSWLDGIPRGGGRWQCKQSGLEVDCSFEQGYSRQI 1059
            EGAA WP PPP+ L+LHLFLE+HRP                        RV F GGLAYEGQL RRE GE  +  PHGWG + FPD  FY+G W GGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      G    SYDGDW ND+PHG+G+ VD A G ERF G WRHGIRSG GTLVQG  +K    EK++              ER    SSE+AWYSGNF  G PHGDG M     TFC            +ID GE      G FEGSW+DG+P G GRW  KQSG+ +DC+FEQGYSR+I
Sbjct:   66 EGAATWPPPPPIPLILHLFLENHRPRDVSALPSGGSRGSNAGDGSSSVHRVWFTGGLAYEGQLLRREGGE--KRVPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGSHTRSYDGDWENDLPHGHGVFVDTAEG-ERFCGAWRHGIRSGAGTLVQGRLEK----EKRQKGGEDTGEEA----EREDEASSELAWYSGNFEHGLPHGDGTMTYCGATFCXXXXXXXXXXXXKIDFGEKSGFSSGVFEGSWIDGVPCGSGRWWYKQSGVALDCTFEQGYSRKI 407
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1509.3647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q6_ECTSI7.900e-6561.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1509contigL-elsbetiae_contig1509:7936..8994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue1.1e-54
Seed eggNOG ortholog2880.D7G4Q6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-20_000760.1
Exons1
Model size1059
Cds size1059
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.8508134-CDS-L-elsbetiae_contig1509:7935..89941622815612.8508134-CDS-L-elsbetiae_contig1509:7935..8994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 7936..8994 -
1691682991.212558-CDS-L-elsbetiae_contig1509:7935..89941691682991.212558-CDS-L-elsbetiae_contig1509:7935..8994Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1509 7936..8994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1509.3647.1prot_L-elsbetiae_contig1509.3647.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1509 7936..8994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1509.3647.1

>prot_L-elsbetiae_contig1509.3647.1 ID=prot_L-elsbetiae_contig1509.3647.1|Name=mRNA_L-elsbetiae_contig1509.3647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=353bp
RDQQHQRQPEHTPPPEGANEGAAWPAPPPVLLVLHLFLESHRPPREGSSP
PPPRRVRFPGGLAYEGQLRRRERGEQGREAPHGWGRIVFPDGAFYEGTWR
GGVVHGKGALHLANGNCYFGSWARGRKHGLGTYMHADGSCHEGFYAAGER
SGVGTMLYASGAVYEGEFKDGRRHGVGRLELVTGGASYDGDWANDVPHGY
GIHVDPAGGGERFEGRWRHGIRSGGGTLVQGWADKGQQGEKKEGEEGGGQ
EEGGEEEERGGVPSSEVAWYSGNFSGGYPHGDGMMMCGSMTFCGHVERGV
WNGGGRIDLGEPGLGSFEGSWLDGIPRGGGRWQCKQSGLEVDCSFEQGYS
RQI
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mRNA from alignment at L-elsbetiae_contig1509:7936..8994-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1509.3647.1 ID=mRNA_L-elsbetiae_contig1509.3647.1|Name=mRNA_L-elsbetiae_contig1509.3647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1059bp|location=Sequence derived from alignment at L-elsbetiae_contig1509:7936..8994- (Laminarionema elsbetiae ELsaHSoW15)
CGAGATCAGCAGCACCAGCGCCAGCCAGAGCACACGCCGCCGCCGGAGGG
AGCAAACGAGGGCGCCGCGTGGCCTGCGCCCCCCCCCGTCCTCCTCGTCC
TGCACCTCTTCCTCGAGAGCCACCGCCCGCCGAGGGAAGGGTCTTCGCCC
CCGCCGCCTCGTCGTGTCCGCTTCCCCGGCGGCCTGGCGTACGAGGGCCA
GCTTCGCCGCCGCGAACGAGGAGAACAAGGCCGAGAGGCGCCGCACGGCT
GGGGGCGCATCGTGTTCCCGGATGGCGCTTTCTACGAGGGCACCTGGCGC
GGCGGCGTTGTCCACGGGAAGGGCGCCCTCCACCTCGCGAACGGCAACTG
CTACTTTGGATCCTGGGCGCGCGGTCGAAAGCACGGCCTGGGCACGTACA
TGCACGCGGACGGGTCCTGCCACGAGGGCTTCTACGCGGCCGGCGAGCGG
AGCGGCGTGGGGACGATGCTCTACGCCTCGGGCGCGGTCTACGAGGGGGA
GTTTAAGGATGGGCGGAGGCACGGCGTGGGCCGGCTCGAGCTCGTCACCG
GGGGGGCGTCGTACGACGGCGACTGGGCGAACGACGTGCCGCACGGCTAC
GGGATTCACGTAGACCCCGCCGGCGGAGGGGAGCGCTTCGAGGGGAGATG
GCGGCACGGGATTCGGTCGGGCGGAGGTACGCTGGTTCAGGGATGGGCGG
ACAAGGGGCAGCAGGGGGAGAAGAAGGAGGGAGAGGAGGGGGGAGGGCAG
GAGGAAGGGGGGGAGGAGGAGGAGAGGGGAGGTGTGCCTTCTTCGGAAGT
GGCGTGGTACTCGGGGAACTTTTCTGGGGGCTACCCGCACGGTGACGGGA
TGATGATGTGCGGCTCGATGACGTTTTGTGGCCATGTGGAGCGCGGGGTG
TGGAATGGGGGTGGAAGGATCGACCTCGGGGAGCCTGGCCTCGGGAGCTT
CGAGGGGTCGTGGCTTGACGGGATCCCCAGGGGCGGCGGGAGGTGGCAGT
GCAAGCAGAGCGGGCTCGAAGTGGATTGCTCCTTTGAACAGGGGTACTCT
CGACAAATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1509:7936..8994-

>mRNA_L-elsbetiae_contig1509.3647.1 ID=mRNA_L-elsbetiae_contig1509.3647.1|Name=mRNA_L-elsbetiae_contig1509.3647.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2118bp|location=Sequence derived from alignment at L-elsbetiae_contig1509:7936..8994- (Laminarionema elsbetiae ELsaHSoW15)
CGAGATCAGCAGCACCAGCGCCAGCCAGAGCACACGCCGCCGCCGGAGGG
AGCAAACGAGGGCGCCGCGTGGCCTGCGCCCCCCCCCGTCCTCCTCGTCC
TGCACCTCTTCCTCGAGAGCCACCGCCCGCCGAGGGAAGGGTCTTCGCCC
CCGCCGCCTCGTCGTGTCCGCTTCCCCGGCGGCCTGGCGTACGAGGGCCA
GCTTCGCCGCCGCGAACGAGGAGAACAAGGCCGAGAGGCGCCGCACGGCT
GGGGGCGCATCGTGTTCCCGGATGGCGCTTTCTACGAGGGCACCTGGCGC
GGCGGCGTTGTCCACGGGAAGGGCGCCCTCCACCTCGCGAACGGCAACTG
CTACTTTGGATCCTGGGCGCGCGGTCGAAAGCACGGCCTGGGCACGTACA
TGCACGCGGACGGGTCCTGCCACGAGGGCTTCTACGCGGCCGGCGAGCGG
AGCGGCGTGGGGACGATGCTCTACGCCTCGGGCGCGGTCTACGAGGGGGA
GTTTAAGGATGGGCGGAGGCACGGCGTGGGCCGGCTCGAGCTCGTCACCG
GGGGGGCGTCGTACGACGGCGACTGGGCGAACGACGTGCCGCACGGCTAC
GGGATTCACGTAGACCCCGCCGGCGGAGGGGAGCGCTTCGAGGGGAGATG
GCGGCACGGGATTCGGTCGGGCGGAGGTACGCTGGTTCAGGGATGGGCGG
ACAAGGGGCAGCAGGGGGAGAAGAAGGAGGGAGAGGAGGGGGGAGGGCAG
GAGGAAGGGGGGGAGGAGGAGGAGAGGGGAGGTGTGCCTTCTTCGGAAGT
GGCGTGGTACTCGGGGAACTTTTCTGGGGGCTACCCGCACGGTGACGGGA
TGATGATGTGCGGCTCGATGACGTTTTGTGGCCATGTGGAGCGCGGGGTG
TGGAATGGGGGTGGAAGGATCGACCTCGGGGAGCCTGGCCTCGGGAGCTT
CGAGGGGTCGTGGCTTGACGGGATCCCCAGGGGCGGCGGGAGGTGGCAGT
GCAAGCAGAGCGGGCTCGAAGTGGATTGCTCCTTTGAACAGGGGTACTCT
CGACAAATCCGAGATCAGCAGCACCAGCGCCAGCCAGAGCACACGCCGCC
GCCGGAGGGAGCAAACGAGGGCGCCGCGTGGCCTGCGCCCCCCCCCGTCC
TCCTCGTCCTGCACCTCTTCCTCGAGAGCCACCGCCCGCCGAGGGAAGGG
TCTTCGCCCCCGCCGCCTCGTCGTGTCCGCTTCCCCGGCGGCCTGGCGTA
CGAGGGCCAGCTTCGCCGCCGCGAACGAGGAGAACAAGGCCGAGAGGCGC
CGCACGGCTGGGGGCGCATCGTGTTCCCGGATGGCGCTTTCTACGAGGGC
ACCTGGCGCGGCGGCGTTGTCCACGGGAAGGGCGCCCTCCACCTCGCGAA
CGGCAACTGCTACTTTGGATCCTGGGCGCGCGGTCGAAAGCACGGCCTGG
GCACGTACATGCACGCGGACGGGTCCTGCCACGAGGGCTTCTACGCGGCC
GGCGAGCGGAGCGGCGTGGGGACGATGCTCTACGCCTCGGGCGCGGTCTA
CGAGGGGGAGTTTAAGGATGGGCGGAGGCACGGCGTGGGCCGGCTCGAGC
TCGTCACCGGGGGGGCGTCGTACGACGGCGACTGGGCGAACGACGTGCCG
CACGGCTACGGGATTCACGTAGACCCCGCCGGCGGAGGGGAGCGCTTCGA
GGGGAGATGGCGGCACGGGATTCGGTCGGGCGGAGGTACGCTGGTTCAGG
GATGGGCGGACAAGGGGCAGCAGGGGGAGAAGAAGGAGGGAGAGGAGGGG
GGAGGGCAGGAGGAAGGGGGGGAGGAGGAGGAGAGGGGAGGTGTGCCTTC
TTCGGAAGTGGCGTGGTACTCGGGGAACTTTTCTGGGGGCTACCCGCACG
GTGACGGGATGATGATGTGCGGCTCGATGACGTTTTGTGGCCATGTGGAG
CGCGGGGTGTGGAATGGGGGTGGAAGGATCGACCTCGGGGAGCCTGGCCT
CGGGAGCTTCGAGGGGTCGTGGCTTGACGGGATCCCCAGGGGCGGCGGGA
GGTGGCAGTGCAAGCAGAGCGGGCTCGAAGTGGATTGCTCCTTTGAACAG
GGGTACTCTCGACAAATC
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