mRNA_L-elsbetiae_contig15053.3627.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15053.3627.1
Unique NamemRNA_L-elsbetiae_contig15053.3627.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: D7FN88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 6.920e-25
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 EEEGPRNGRPDCPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            E  GPR+GRPDCPHRYGSILS+SYFTLLNLFGEFPLMD HS AGRFIG FTAVV
Sbjct:  186 EGAGPRDGRPDCPHRYGSILSSSYFTLLNLFGEFPLMDNHSTAGRFIGVFTAVV 239
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A7S2EPX5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EPX5_TRICV)

HSP 1 Score: 61.6 bits (148), Expect = 9.890e-11
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   13 PRNGRPD-CPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            P    P+ C + + SI+S+ Y+ LLNLFGEFPL D HSPAG+ +G  TAVV
Sbjct:   42 PTEENPEPCYNLFRSIVSSGYYALLNLFGEFPLCDQHSPAGKVVGTLTAVV 92
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A7S0WV92_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WV92_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 3.180e-10
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:   40 HRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            HR+ SILS+SYFTLLNLFGE+PL D  S  G+ IG FTA++
Sbjct:   56 HRFESILSSSYFTLLNLFGEYPLADKVSVWGKVIGTFTAII 96
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A1E7ER54_9STRA (Putative ion membrane transporter n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER54_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.000e-10
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   34 CPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            C + Y SI  +SY+TLLNLFGEFPL D HSP G+ IG FTA++
Sbjct:  300 CWNLYQSIPMSSYYTLLNLFGEFPLFDQHSPKGQLIGTFTAII 342
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A6V2DTS6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2DTS6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.560e-9
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   34 CPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            C + Y SI SASYFTLLNLFGE+P++D HS AG+ +G   AV+
Sbjct:  258 CFNLYRSIPSASYFTLLNLFGEYPMIDSHSFAGKIVGTIVAVI 300
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A6V2DVP4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2DVP4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.570e-9
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   34 CPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            C + Y SI SASYFTLLNLFGE+P++D HS AG+ +G   AV+
Sbjct:  258 CFNLYRSIPSASYFTLLNLFGEYPMIDSHSFAGKIVGTIVAVI 300
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A7S2YH42_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YH42_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.870e-9
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   34 CPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            C + Y SI   SY+ LLNLFGEFPL+D HS AG+++G  TA+V
Sbjct:  296 CYNLYNSIPMTSYYALLNLFGEFPLIDNHSTAGQWVGTLTAIV 338
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A7S1GLC4_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GLC4_CYCTE)

HSP 1 Score: 57.8 bits (138), Expect = 5.780e-9
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 EEGPRNGRPDCPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            EE P      C + Y SI  ASY++LLNLFGEFPL+D H+ AG+ +G   A+V
Sbjct:   14 EENPE----PCYNLYRSIPMASYYSLLNLFGEFPLIDNHNVAGKIVGTLVAIV 62
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A448Z0F0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0F0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.670e-9
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   34 CPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            C + Y SI SASY++LLNLFGEFPL D HS  G+ +G  TAVV
Sbjct:  352 CYNLYRSIPSASYYSLLNLFGEFPLFDQHSVGGQVVGTITAVV 394
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BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Match: A0A8J9X859_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X859_PHATR)

HSP 1 Score: 58.9 bits (141), Expect = 9.070e-9
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   34 CPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAFTAVV 162
            C + + SI  ASY+ LLNLFGEFPL+D HS AG+ IG  TAVV
Sbjct:  293 CYNLFNSIPMASYYALLNLFGEFPLIDQHSSAGQVIGTLTAVV 335
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15053.3627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FN88_ECTSI6.920e-2587.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2EPX5_TRICV9.890e-1154.90Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0WV92_9CHLO3.180e-1065.85Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A1E7ER54_9STRA4.000e-1062.79Putative ion membrane transporter n=1 Tax=Fragilar... [more]
A0A6V2DTS6_9STRA3.560e-960.47Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6V2DVP4_9STRA3.570e-960.47Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2YH42_9STRA4.870e-958.14Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S1GLC4_CYCTE5.780e-950.94Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A448Z0F0_9STRA6.670e-962.79Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A8J9X859_PHATR9.070e-962.79Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15053contigL-elsbetiae_contig15053:737..898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue2.9e-20
Seed eggNOG ortholog2880.D7FN88
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsCOG2126@1,KOG1419@2759,KOG3713@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.9106803-CDS-L-elsbetiae_contig15053:736..8981622815610.9106803-CDS-L-elsbetiae_contig15053:736..898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15053 737..898 -
1691682990.0721638-CDS-L-elsbetiae_contig15053:736..8981691682990.0721638-CDS-L-elsbetiae_contig15053:736..898Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15053 737..898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15053.3627.1prot_L-elsbetiae_contig15053.3627.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15053 737..898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15053.3627.1

>prot_L-elsbetiae_contig15053.3627.1 ID=prot_L-elsbetiae_contig15053.3627.1|Name=mRNA_L-elsbetiae_contig15053.3627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
EEEGPRNGRPDCPHRYGSILSASYFTLLNLFGEFPLMDGHSPAGRFIGAF
TAVV
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mRNA from alignment at L-elsbetiae_contig15053:737..898-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15053.3627.1 ID=mRNA_L-elsbetiae_contig15053.3627.1|Name=mRNA_L-elsbetiae_contig15053.3627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=162bp|location=Sequence derived from alignment at L-elsbetiae_contig15053:737..898- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAAGAGGGGCCCCGCAACGGAAGGCCCGACTGCCCGCACCGGTACGG
GTCCATCCTGTCTGCGTCGTACTTCACGCTGCTCAACCTCTTCGGGGAGT
TCCCGCTGATGGACGGCCACAGCCCCGCCGGCCGCTTCATCGGCGCGTTC
ACCGCCGTGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15053:737..898-

>mRNA_L-elsbetiae_contig15053.3627.1 ID=mRNA_L-elsbetiae_contig15053.3627.1|Name=mRNA_L-elsbetiae_contig15053.3627.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig15053:737..898- (Laminarionema elsbetiae ELsaHSoW15)
GAAGAAGAGGGGCCCCGCAACGGAAGGCCCGACTGCCCGCACCGGTACGG
GTCCATCCTGTCTGCGTCGTACTTCACGCTGCTCAACCTCTTCGGGGAGT
TCCCGCTGATGGACGGCCACAGCCCCGCCGGCCGCTTCATCGGCGCGTTC
ACCGCCGTGGTGGAAGAAGAGGGGCCCCGCAACGGAAGGCCCGACTGCCC
GCACCGGTACGGGTCCATCCTGTCTGCGTCGTACTTCACGCTGCTCAACC
TCTTCGGGGAGTTCCCGCTGATGGACGGCCACAGCCCCGCCGGCCGCTTC
ATCGGCGCGTTCACCGCCGTGGTG
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