mRNA_L-elsbetiae_contig15.3592.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15.3592.1
Unique NamemRNA_L-elsbetiae_contig15.3592.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: D8LE04_ECTSI (Tubulin delta chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE04_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.090e-30
Identity = 74/100 (74.00%), Postives = 81/100 (81.00%), Query Frame = -1 
Query:   77 AMSVVTVQVGQCGNQIGASLFQALHDHAKQAPV--GQQGGTTEAEQARAACRRGFFRDGGVARAVIIDTEPKVIQRIVASCGGRQE---AGASRAASNRE 361
            AMSVVTVQVGQCGNQ+GASLFQALHDHA Q P   G   GT E+E+AR+ACR+ FFRDGGVARAVIIDTEPKVIQRIVA+ G  +E   AGA RAA  RE
Sbjct:   36 AMSVVTVQVGQCGNQLGASLFQALHDHASQPPAHHGHTSGT-ESERARSACRQSFFRDGGVARAVIIDTEPKVIQRIVATRGRAEESTGAGARRAAGGRE 134
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: A0A672H5L1_SALFA (Tubulin delta chain n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H5L1_SALFA)

HSP 1 Score: 64.3 bits (155), Expect = 1.040e-8
Identity = 45/93 (48.39%), Postives = 50/93 (53.76%), Query Frame = -1 
Query:   98 MSVVTVQVGQCGNQIGASLFQALHDHAKQAPVGQQGGTTEAEQARAACRRGFFRDGG----VARAVIIDTEPKVIQRIVASC--GGRQEAGAS 358
            MSVVTVQ+GQCGNQ+G  LF  L   A+  P              AACR  FFR       VARAV+ID EPKVI + VA    GGR   G S
Sbjct:    1 MSVVTVQLGQCGNQVGQELFDVLSSDAQPGP--------RRAAYPAACRERFFRHTAHGELVARAVLIDMEPKVINQSVAKAAKGGRWRYGDS 85
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: W5M887_LEPOC (Tubulin delta chain n=3 Tax=Lepisosteidae TaxID=7915 RepID=W5M887_LEPOC)

HSP 1 Score: 62.0 bits (149), Expect = 6.490e-8
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = -1 
Query:  128 MSVVTVQVGQCGNQIGASLFQALHDHAKQAPVGQQGGTTEAE-QARAAC---RRGFFRDGGV--ARAVIIDTEPKVIQRIVAS 358
            MSVVTVQ+GQCGNQIG  LF+A+ D +       QG  +E + QA AAC   R  F    GV  ARAV+ID EPKVI + +A+
Sbjct:    1 MSVVTVQLGQCGNQIGQELFKAIGDDSSSG----QGLCSEGQKQAYAACSQERFFFLEQSGVPSARAVLIDMEPKVISQTMAT 79
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: A0A812KK37_SYMMI (Tubulin delta chain (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812KK37_SYMMI)

HSP 1 Score: 62.0 bits (149), Expect = 8.190e-8
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = -1 
Query:  134 MSVVTVQVGQCGNQIGASLFQALHDHAKQAPV-------------GQQGGTTEAEQARAACRRGFFRDGGVARAVIIDTEPKVIQRIV 358
            M+ +T+Q+GQCGNQ+GA +F ALH  A+ A               G++GG   + +A+A         G VARAV++DTEP+V+QR +
Sbjct:    2 MATITLQLGQCGNQLGADIFAALHSEAEAASPSHSEAVRQIFFRPGRRGGGRSSAEAKA---------GPVARAVLVDTEPRVVQRCI 80
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: G3HJ93_CRIGR (Tubulin delta chain n=2 Tax=Muroidea TaxID=337687 RepID=G3HJ93_CRIGR)

HSP 1 Score: 61.2 bits (147), Expect = 9.150e-8
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = -1 
Query:  122 MSVVTVQVGQCGNQIGASLFQALHDHAKQAPVGQQGGTTEAEQARAACRRGFFRDGG----VARAVIIDTEPKVIQRIVASCG 358
            MS+VTVQ+GQCGNQIG  +F AL    + +P        EA QA  +C+  FFR+      VARAV++D EPKVI + ++  G
Sbjct:    1 MSIVTVQLGQCGNQIGFEVFDALFRDTQCSPGLCSKRENEAYQA--SCKERFFREEENGVPVARAVLVDMEPKVINQTLSKAG 81
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: A0A7S1NS23_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NS23_9EUGL)

HSP 1 Score: 58.2 bits (139), Expect = 1.100e-7
Identity = 34/80 (42.50%), Postives = 42/80 (52.50%), Query Frame = -1 
Query:  143 AMSVVTVQVGQCGNQIGASLFQALHDHAKQAPVGQQGGTTEAEQARAACRRGFFRDGG-------VARAVIIDTEPKVIQ 361
            AMS++TVQ+GQCGNQ+G  +F  L     Q P GQQ    +           FFR  G       VAR V +D EPKVI+
Sbjct:   47 AMSIITVQIGQCGNQVGCEMFSTLAQELLQLPEGQQAEAWDP----------FFRPAGRGPGAVPVARCVQVDMEPKVIE 116
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: H0V4B6_CAVPO (Tubulin delta chain n=7 Tax=Hystricomorpha TaxID=33550 RepID=H0V4B6_CAVPO)

HSP 1 Score: 61.2 bits (147), Expect = 1.190e-7
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = -1 
Query:  134 MSVVTVQVGQCGNQIGASLFQALHDHAKQAPVGQQG--GTTEAEQARAACRRGFFRDGG---VARAVIIDTEPKVIQRIV 358
            MS+VTVQ+GQCGNQIG  +F AL   ++ +    QG     E E  +A+CR  FFR+     +ARAV++D EPKVI +I+
Sbjct:    1 MSIVTVQLGQCGNQIGFEVFDALFMDSQCS----QGFCSKRENEAYQASCRERFFREENGVPIARAVLVDMEPKVINQIL 76
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: A0A2I3G3F0_NOMLE (Tubulin delta chain n=7 Tax=Simiiformes TaxID=314293 RepID=A0A2I3G3F0_NOMLE)

HSP 1 Score: 58.2 bits (139), Expect = 1.230e-7
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = -1 
Query:  140 MSVVTVQVGQCGNQIGASLFQAL--HDHAKQAPVGQQGGTTEAEQARAACRRGFF--RDGGV--ARAVIIDTEPKVIQR 358
            MS+VTVQ+GQCGNQIG  +F AL    H+ Q    ++    E E  +A+C+  FF   + GV  ARAV++D EPKVI +
Sbjct:    1 MSIVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSKR----ENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQ 75
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: A0A4W2II02_BOBOX (Tubulin delta chain n=10 Tax=Pecora TaxID=35500 RepID=A0A4W2II02_BOBOX)

HSP 1 Score: 60.8 bits (146), Expect = 1.520e-7
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = -1 
Query:  104 MSVVTVQVGQCGNQIGASLFQALHD--HAKQAPVGQQGGTTEAEQARAACRRGFF--RDGGV--ARAVIIDTEPKVIQRIV--ASCGGRQEAG 358
            MS+VTVQ+GQCGNQIG  +F AL +  H  +    ++    E E  +A+C+  FF   + GV  ARAV++D EPKVI + +  A+C GR + G
Sbjct:    1 MSIVTVQLGQCGNQIGFEVFDALFNDSHCSRGLCSKR----ENEAYQASCKERFFSEEENGVPVARAVLVDMEPKVINQTLSKATCSGRWKYG 89
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BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Match: F6R4K5_BOVIN (Tubulin delta chain n=30 Tax=Boreoeutheria TaxID=1437010 RepID=F6R4K5_BOVIN)

HSP 1 Score: 60.8 bits (146), Expect = 1.610e-7
Identity = 41/93 (44.09%), Postives = 58/93 (62.37%), Query Frame = -1 
Query:  104 MSVVTVQVGQCGNQIGASLFQALHD--HAKQAPVGQQGGTTEAEQARAACRRGFF--RDGGV--ARAVIIDTEPKVIQRIV--ASCGGRQEAG 358
            MS+VTVQ+GQCGNQIG  +F AL +  H  +    ++    E E  +A+C+  FF   + GV  ARAV++D EPKVI + +  A+C GR + G
Sbjct:    1 MSIVTVQLGQCGNQIGFEVFDALFNDSHCSRGLCSKR----ENEAYQASCKERFFSEEENGVPVARAVLVDMEPKVINQTLSKAACSGRWKYG 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15.3592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE04_ECTSI1.090e-3074.00Tubulin delta chain n=1 Tax=Ectocarpus siliculosus... [more]
A0A672H5L1_SALFA1.040e-848.39Tubulin delta chain n=2 Tax=Salarias fasciatus Tax... [more]
W5M887_LEPOC6.490e-851.81Tubulin delta chain n=3 Tax=Lepisosteidae TaxID=79... [more]
A0A812KK37_SYMMI8.190e-839.77Tubulin delta chain (Fragment) n=1 Tax=Symbiodiniu... [more]
G3HJ93_CRIGR9.150e-845.78Tubulin delta chain n=2 Tax=Muroidea TaxID=337687 ... [more]
A0A7S1NS23_9EUGL1.100e-742.50Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
H0V4B6_CAVPO1.190e-747.50Tubulin delta chain n=7 Tax=Hystricomorpha TaxID=3... [more]
A0A2I3G3F0_NOMLE1.230e-746.84Tubulin delta chain n=7 Tax=Simiiformes TaxID=3142... [more]
A0A4W2II02_BOBOX1.520e-744.09Tubulin delta chain n=10 Tax=Pecora TaxID=35500 Re... [more]
F6R4K5_BOVIN1.610e-744.09Tubulin delta chain n=30 Tax=Boreoeutheria TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15contigL-elsbetiae_contig15:75490..77211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size580
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15.3592.1prot_L-elsbetiae_contig15.3592.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15 75495..76450 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.0883315-UTR-L-elsbetiae_contig15:75489..754941622815606.0883315-UTR-L-elsbetiae_contig15:75489..75494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 75490..75494 +
1691682986.981685-UTR-L-elsbetiae_contig15:75489..754941691682986.981685-UTR-L-elsbetiae_contig15:75489..75494Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 75490..75494 +
1622815606.1204278-UTR-L-elsbetiae_contig15:76450..765051622815606.1204278-UTR-L-elsbetiae_contig15:76450..76505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 76451..76505 +
1691682987.0147896-UTR-L-elsbetiae_contig15:76450..765051691682987.0147896-UTR-L-elsbetiae_contig15:76450..76505Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 76451..76505 +
1622815606.1330452-UTR-L-elsbetiae_contig15:77027..772111622815606.1330452-UTR-L-elsbetiae_contig15:77027..77211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 77028..77211 +
1691682987.0251343-UTR-L-elsbetiae_contig15:77027..772111691682987.0251343-UTR-L-elsbetiae_contig15:77027..77211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 77028..77211 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.0995355-CDS-L-elsbetiae_contig15:75494..757291622815606.0995355-CDS-L-elsbetiae_contig15:75494..75729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 75495..75729 +
1691682986.9941058-CDS-L-elsbetiae_contig15:75494..757291691682986.9941058-CDS-L-elsbetiae_contig15:75494..75729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 75495..75729 +
1622815606.1098914-CDS-L-elsbetiae_contig15:76349..764501622815606.1098914-CDS-L-elsbetiae_contig15:76349..76450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 76350..76450 +
1691682987.0042841-CDS-L-elsbetiae_contig15:76349..764501691682987.0042841-CDS-L-elsbetiae_contig15:76349..76450Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 76350..76450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15.3592.1

>prot_L-elsbetiae_contig15.3592.1 ID=prot_L-elsbetiae_contig15.3592.1|Name=mRNA_L-elsbetiae_contig15.3592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MLLSPPPSLPLAVLPRLWGVCRCSSLFDAARDAPASCRPPQEATMRWMTF
GSVSMITARATPPSRKKPRRHAALACSASVVPPCWPTGACLAWSWRAWKR
LAPIWLPHCPT*
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mRNA from alignment at L-elsbetiae_contig15:75490..77211+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15.3592.1 ID=mRNA_L-elsbetiae_contig15.3592.1|Name=mRNA_L-elsbetiae_contig15.3592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1722bp|location=Sequence derived from alignment at L-elsbetiae_contig15:75490..77211+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCGATGCTGCTGTCCCCACCGCCTTCCCTGCCGCTAGCGGTGCTGCCG
CGGCTTTGGGGCGTGTGCCGATGCTCCTCTCTGTTTGACGCTGCTCGTGA
TGCGCCCGCTTCTTGTCGTCCTCCGCAGGAGGCAACGATGCGCTGGATGA
CCTTCGGCTCTGTGTCGATGATCACCGCTCGCGCCACGCCGCCGTCGCGG
AAGAAGCCTCGCCGGCACGCGGCCCTCGCTTGCTCCGCTTCTGCTTGCGT
TTTGCGTGCATCAACAAAGGCGGCGGTTGGTCGGTCAGTCGTGGTGCTGT
TGTCGTTATTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
TCGTCGTCGTCGTTTCAAGTGTTACACCCGTCCCCTATTGGGTGGCATTT
GGAGGCCATGGTTATAGGAAGTGGGTCATAGGGTAGGAGCTTCCTACTCT
GTGATATGACACACTTCCTATAACCATGAAAAAATTGGACACTTTTTCCA
GAATATTTTGCTCCTAGATAATAGTCTACTGCTGTTATATTTACTCACCG
AAAGTTCTTATGTACCCCATCAACCCATGACACACTTCCTACGCATTCAT
TGCTGCTGTGACAATGCCGAATGTATGCTACGCGGCGATCAGCGATTAAT
AAACTAGCACACAAGCGGCAACTAGGAAAGCCGAAATTGTTTCGTACGAG
TATCTACGCAACGAACGGGACACACGAGCTTAATGAAAATGCGGACGGAT
ATCTAACTTTGACGTATGATCTACATACTCGTGCACAACGAATACCGGCG
GTACAGTCAGTACCGACGATCAGCGTAACCAGGAACTGGAGCACATTTTG
ACATATTTACCGGTGGTGCCGCCTTGCTGGCCGACAGGTGCTTGTTTGGC
GTGGTCGTGGAGAGCTTGGAAGAGGCTAGCGCCGATCTGGTTACCGCATT
GCCCAACTTGAACAGTAACCACCGACATCGCCTCCTCTGTCAACGAACGC
AACAGGACGCCCGCAGGTAAAAGTGAAGTACATATCTAGATAGACACGGA
GGCGGCATCGAGGATATTAACGAGTGCTGATTGTGCATCTCTAGAAAACC
AAATTCTCTGACCACGGAAGCCGACGCTGCGCGTTTGCTTCAAGTTAGTT
GGCTCGCGAGCTGTCTGTTACATGTATCTAGTAGGAGAGCAAGGTACGCA
GCACAAACATTTCTGTACGATGTATATATGTACCAAGTAGGAGTTCGAAA
AGAGAAAGGGCAAGAGCGGAAGTCCTGCTTCAGCCCGTAACACGAGTTCG
AGACCAGCGCCGTTGCGGTTGAAATAAATCGCTCATCAAAAGAAGACCCT
CCGAACTGAGATCTCTCCACAGCGGGGCATCCGCGAATTCAAATTAATCA
TTTCAAACGTTGGGCACGACGGGCGGTACAGATAAATCACTCACAAAAAT
TTGGTCTCTAAGCACAGTCACCCCTCACAGGAATGATTCCGACGCGATCG
ACTGCCCCATCGCTCCTTGCTTGCCCCCCTGCTGGCAGGTAGCCCGCAAA
CGCGGGGGCGCTGCATGTTCGGCCTACTACCCTGACTCACTTAATCTTCT
CCGTAGACCCCCTCCTGCGGGTGGCAGTCGGCGGTCTTCAAGCAGACAGT
ACCAGTACTCCCAAAATGTTCAAGAGGTGAGAACCGTGGCCATTCTTCTC
TTGGACCCGATGGGCCTTAACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15:75490..77211+

>mRNA_L-elsbetiae_contig15.3592.1 ID=mRNA_L-elsbetiae_contig15.3592.1|Name=mRNA_L-elsbetiae_contig15.3592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig15:75490..77211+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCTGTCCCCACCGCCTTCCCTGCCGCTAGCGGTGCTGCCGCGGCT
TTGGGGCGTGTGCCGATGCTCCTCTCTGTTTGACGCTGCTCGTGATGCGC
CCGCTTCTTGTCGTCCTCCGCAGGAGGCAACGATGCGCTGGATGACCTTC
GGCTCTGTGTCGATGATCACCGCTCGCGCCACGCCGCCGTCGCGGAAGAA
GCCTCGCCGGCACGCGGCCCTCGCTTGCTCCGCTTATGCTGCTGTCCCCA
CCGCCTTCCCTGCCGCTAGCGGTGCTGCCGCGGCTTTGGGGCGTGTGCCG
ATGCTCCTCTCTGTTTGACGCTGCTCGTGATGCGCCCGCTTCTTGTCGTC
CTCCGCAGGAGGCAACGATGCGCTGGATGACCTTCGGCTCTGTGTCGATG
ATCACCGCTCGCGCCACGCCGCCGTCGCGGAAGAAGCCTCGCCGGCACGC
GGCCCTCGCTTGCTCCGCTTCGGTGGTGCCGCCTTGCTGGCCGACAGGTG
CTTGTTTGGCGTGGTCGTGGAGAGCTTGGAAGAGGCTAGCGCCGATCTGG
TTACCGCATTGCCCAACTTGACGGTGGTGCCGCCTTGCTGGCCGACAGGT
GCTTGTTTGGCGTGGTCGTGGAGAGCTTGGAAGAGGCTAGCGCCGATCTG
GTTACCGCATTGCCCAACTTGA
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