mRNA_L-elsbetiae_contig15.3591.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15.3591.1
Unique NamemRNA_L-elsbetiae_contig15.3591.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15.3591.1 vs. uniprot
Match: D7G9E1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E1_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.310e-16
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 AAERLLSVTRALLLVNADHGSAWNARKEVVLDGLCEGGSIPQEIK 135
            AA  LLSVTRALLLVNADHGSAWN RK++V+DGLCEG SIPQEIK
Sbjct:  140 AAATLLSVTRALLLVNADHGSAWNTRKQLVVDGLCEGSSIPQEIK 184
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BLAST of mRNA_L-elsbetiae_contig15.3591.1 vs. uniprot
Match: A0A6H5JXA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.010e-15
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 AAERLLSVTRALLLVNADHGSAWNARKEVVLDGLCEGGSIPQEIK 135
            AA  LLSVTRALLLVNADH SAWN RK++V+DGLCEG SIPQE+K
Sbjct:  128 AAGTLLSVTRALLLVNADHASAWNTRKQLVVDGLCEGSSIPQEVK 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15.3591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9E1_ECTSI3.310e-1684.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXA5_9PHAE4.010e-1580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15contigL-elsbetiae_contig15:69872..70017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue4e-13
Seed eggNOG ortholog2880.D7G9E1
Preferred namePTAR1
KEGG koko:K14137
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005968,GO:0006464,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009987,GO:0018342,GO:0018344,GO:0019538,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0071704,GO:0097354,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01006
Exons1
Model size146
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.9501739-CDS-L-elsbetiae_contig15:69873..700171622815606.9501739-CDS-L-elsbetiae_contig15:69873..70017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 69874..70017 -
1691682987.5605764-CDS-L-elsbetiae_contig15:69873..700171691682987.5605764-CDS-L-elsbetiae_contig15:69873..70017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 69874..70017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15.3591.1prot_L-elsbetiae_contig15.3591.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15 69874..70017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15.3591.1

>prot_L-elsbetiae_contig15.3591.1 ID=prot_L-elsbetiae_contig15.3591.1|Name=mRNA_L-elsbetiae_contig15.3591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
AAERLLSVTRALLLVNADHGSAWNARKEVVLDGLCEGGSIPQEIKASL
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mRNA from alignment at L-elsbetiae_contig15:69872..70017-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15.3591.1 ID=mRNA_L-elsbetiae_contig15.3591.1|Name=mRNA_L-elsbetiae_contig15.3591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=146bp|location=Sequence derived from alignment at L-elsbetiae_contig15:69872..70017- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGAGAGGCTGCTATCAGTAACGCGGGCCTTGCTCTTGGTCAACGC
AGACCACGGGTCTGCCTGGAACGCGCGAAAGGAGGTCGTCCTGGATGGGC
TCTGCGAGGGAGGATCGATTCCGCAGGAGATCAAGGCAAGCCTCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15:69872..70017-

>mRNA_L-elsbetiae_contig15.3591.1 ID=mRNA_L-elsbetiae_contig15.3591.1|Name=mRNA_L-elsbetiae_contig15.3591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig15:69872..70017- (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGAGAGGCTGCTATCAGTAACGCGGGCCTTGCTCTTGGTCAACGC
AGACCACGGGTCTGCCTGGAACGCGCGAAAGGAGGTCGTCCTGGATGGGC
TCTGCGAGGGAGGATCGATTCCGCAGGAGATCAAGGCAAGCCTCGCGGCG
GAGAGGCTGCTATCAGTAACGCGGGCCTTGCTCTTGGTCAACGCAGACCA
CGGGTCTGCCTGGAACGCGCGAAAGGAGGTCGTCCTGGATGGGCTCTGCG
AGGGAGGATCGATTCCGCAGGAGATCAAGGCAAGCCTC
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