mRNA_L-elsbetiae_contig15.3590.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15.3590.1
Unique NamemRNA_L-elsbetiae_contig15.3590.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15.3590.1 vs. uniprot
Match: D7G9E1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E1_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 7.350e-34
Identity = 67/92 (72.83%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   88 PLAEELLRSEVSFVDKWLTSHVSDHSALNHRKNVVSALVAVSSGANE-TRLDIAEKERSSNSKLLRDYPGHESLWCYRRFVCQAFLVIAPRN 360
            P A ELL  E+ FVD+WLTSHVSDHSALNHRKNV SAL A+S  ++E  RL + +KERS+NSKLLRDYPGHESLWCYRRFVCQA LV AP +
Sbjct:  282 PAAAELLEREIEFVDRWLTSHVSDHSALNHRKNVFSALAAMSPASDEMARLGLVDKERSANSKLLRDYPGHESLWCYRRFVCQARLVTAPSS 373
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BLAST of mRNA_L-elsbetiae_contig15.3590.1 vs. uniprot
Match: A0A6H5JXA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA5_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.430e-33
Identity = 66/92 (71.74%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:   88 PLAEELLRSEVSFVDKWLTSHVSDHSALNHRKNVVSALVAVSSGANE-TRLDIAEKERSSNSKLLRDYPGHESLWCYRRFVCQAFLVIAPRN 360
            P A ELL  E+ FVD+WLTSHVSDHSALNHRKNV SAL A+S  ++E  RL + +KERS+NSKLLRDYPGHESLWCYRRFVCQ  LV AP +
Sbjct:  270 PAAAELLEREIEFVDRWLTSHVSDHSALNHRKNVFSALAAMSPASDEMARLGLVDKERSANSKLLRDYPGHESLWCYRRFVCQVRLVTAPSS 361
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BLAST of mRNA_L-elsbetiae_contig15.3590.1 vs. uniprot
Match: A4RQI9_OSTLU (Uncharacterized protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A4RQI9_OSTLU)

HSP 1 Score: 56.6 bits (135), Expect = 1.020e-5
Identity = 34/98 (34.69%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:   88 PLAEELLRSEVSFVDKWLTSHVSDHSALNHRKNVVSALVAVSSGANETRLDIAEKERSSNSKLLRDYPGHESLWCYRRFVCQAFLVIAPRNALLGASV 381
            P   ELL  E+   ++ + + VSDH AL++R ++V   +     A+   + + E E S +  L+R YPGHE+LW Y RFV    +   PR+  + AS+
Sbjct:  224 PNRRELLDQELCENERRVRTSVSDHCALHYRSHIVKRALGARP-ADRRSIVLYEDELSRH--LIRQYPGHEALWSYYRFVFDTMICAFPRDGDVFASI 318
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BLAST of mRNA_L-elsbetiae_contig15.3590.1 vs. uniprot
Match: UPI000A2A4B34 (protein prenyltransferase alpha subunit repeat-containing protein 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4B34)

HSP 1 Score: 55.1 bits (131), Expect = 3.240e-5
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  106 LRSEVSFVDKWLTSHVSDHSALNHRKNVVSALVAVSSGANETRLDIAEKERSSNSKLLRDYPGHESLWCYRRFV 327
            L +E+  ++KW   HVSDH   + R+ ++  L  +SS  +E  + + + E    +KL    PGHES+WC+RRFV
Sbjct:  184 LIAELCSMEKWXQMHVSDHCGYHFRQKIIKKLKNISS-TDELAVLLLD-ELDFVTKLQESLPGHESIWCHRRFV 255
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BLAST of mRNA_L-elsbetiae_contig15.3590.1 vs. uniprot
Match: A0A1C7NLR4_9FUNG (Protein prenyltransferase alpha subunit repeat-containing protein 1 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NLR4_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 4.010e-5
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  112 SEVSFVDKWLTSHVSDHSALNHRKNVVSALVAVSSGANETRLDIAEKERSSNSKLLRDYPGHESLWCYRRFVCQAFL 342
            +E + + +W+  H SD+S+ NH + ++  L       ++TR    E+     ++L+  YPGHESLWC+RRF    F+
Sbjct:  188 NEYNTLCRWIELHASDYSSFNHLQQIIERLAL---DQDQTR---QEQHMRWLNRLIIRYPGHESLWCHRRFCSHLFV 258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15.3590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G9E1_ECTSI7.350e-3472.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXA5_9PHAE2.430e-3371.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A4RQI9_OSTLU1.020e-534.69Uncharacterized protein n=2 Tax=Ostreococcus sp. '... [more]
UPI000A2A4B343.240e-537.84protein prenyltransferase alpha subunit repeat-con... [more]
A0A1C7NLR4_9FUNG4.010e-533.77Protein prenyltransferase alpha subunit repeat-con... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15contigL-elsbetiae_contig15:65800..67250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue2.3e-32
Seed eggNOG ortholog2880.D7G9E1
Preferred namePTAR1
KEGG koko:K14137
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005968,GO:0006464,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009987,GO:0018342,GO:0018344,GO:0019538,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0071704,GO:0097354,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
Ec32 ortholog descriptionProtein prenyltransferase, alpha subunit
Ec32 orthologEc-28_000570.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01006
Exons3
Model size732
Cds size732
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15.3590.1prot_L-elsbetiae_contig15.3590.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15 65800..67250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.8856537-CDS-L-elsbetiae_contig15:65799..663141622815606.8856537-CDS-L-elsbetiae_contig15:65799..66314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 65800..66314 -
1691682987.5186257-CDS-L-elsbetiae_contig15:65799..663141691682987.5186257-CDS-L-elsbetiae_contig15:65799..66314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 65800..66314 -
1622815606.8974726-CDS-L-elsbetiae_contig15:66640..667521622815606.8974726-CDS-L-elsbetiae_contig15:66640..66752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 66641..66752 -
1691682987.52981-CDS-L-elsbetiae_contig15:66640..667521691682987.52981-CDS-L-elsbetiae_contig15:66640..66752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 66641..66752 -
1622815606.9121976-CDS-L-elsbetiae_contig15:67145..672501622815606.9121976-CDS-L-elsbetiae_contig15:67145..67250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 67146..67250 -
1691682987.5471404-CDS-L-elsbetiae_contig15:67145..672501691682987.5471404-CDS-L-elsbetiae_contig15:67145..67250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 67146..67250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15.3590.1

>prot_L-elsbetiae_contig15.3590.1 ID=prot_L-elsbetiae_contig15.3590.1|Name=mRNA_L-elsbetiae_contig15.3590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
AAAGTGRGSDSSLSKVVGDEVAEDGASSPPLAEELLRSEVSFVDKWLTSH
VSDHSALNHRKNVVSALVAVSSGANETRLDIAEKERSSNSKLLRDYPGHE
SLWCYRRFVCQAFLVIAPRNALLGASVPGAGAAAVPHNAGAPASAAAAAA
DAAALLRDARLEDNLDNPRSSGGGGGGDRVSCDGRNVSLSLSSGAASGES
DGPPAATMTAAAACRDRRYGYDWARWSRAAREWHEGCVLEDAKA
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mRNA from alignment at L-elsbetiae_contig15:65800..67250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15.3590.1 ID=mRNA_L-elsbetiae_contig15.3590.1|Name=mRNA_L-elsbetiae_contig15.3590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1451bp|location=Sequence derived from alignment at L-elsbetiae_contig15:65800..67250- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCTGGCACCGGACGTGGGTCTGACTCTTCTCTATCGAAGGTCGT
GGGGGACGAGGTGGCGGAAGACGGCGCTTCGTCGCCTCCACTTGCTGAGG
AGCTGGTGAGTCTCGCCTCGTCGTGCTTTTGGCATGTGTACCCTCAGCCA
AAGCAATGACGGTGTTTAGAGGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
GCGCTGTTTCTGATTTAGTGTGTTTTTGCCTCACGCAAAAAAAAAGCTAT
TTCCCGGTGTGCCGAATCCGAGACACGAAATTAAAACGACGACTTTTTGC
TACTCTTCTTGTGGTAGTTGAGAGCGAAGCTGCAACAACAGCAGTAGCTT
AACCTACATGCCCCTTTTCAGTGTGTCCGTCCACTGTTTTCGTGACACCG
CCCCCCCCCGTGTGAGTACGTGACCGTCGGACCCCCCGCGGCGAAAAATA
TCTTATTTTTCCTCGTCTGACATGATGCGATGTATGATGTGATCATAGCT
TCGGAGCGAGGTGTCGTTCGTGGACAAGTGGTTGACAAGCCACGTTTCGG
ACCATTCGGCCCTCAACCACCGGAAGAACGTCGTATCTGCCCTAGTGGCC
GTGTCGTCAGGTGAGGGAGGTAAATGGCGACTCCGGGTGCTTTGTGTGTT
TGGGGGGGCCCGAGGGACCGGCTCGAAGTCTTCTTAAGTTCTCATATATA
TATATATACCGCTGTACAGCTCAGCTTCGTCTCCGTTTTCTGGTGGCTGC
TGCACGTGTAAAACTGCTGTGGTTCCCGTTTTCAAAGAGCCAAGACGTAC
GTAGCGAGGTTGGTTCATTATCATTATTATTTTCTCCAATTCTTTATCTC
CGTCGCCCGGCCTCTCCATCTCGTCACCCTCCCCTCCCTTGTTGTTGTTG
TTGTTTGGCCACCCGTGCGCGCACACGGCGCGGCAGGGGCGAACGAGACA
AGGCTCGACATCGCGGAGAAAGAGCGGTCGAGCAACTCCAAGCTGCTCCG
GGACTACCCGGGGCACGAGAGCCTGTGGTGCTACCGCCGCTTCGTCTGCC
AGGCGTTCCTCGTCATCGCGCCGCGTAACGCGCTCCTCGGCGCCAGCGTC
CCCGGTGCCGGTGCGGCCGCCGTGCCCCATAACGCCGGAGCCCCGGCATC
CGCTGCCGCCGCCGCCGCCGATGCTGCCGCTCTTCTGCGAGACGCCCGCC
TCGAGGATAACCTCGACAACCCACGCAGTAGCGGAGGTGGAGGAGGGGGA
GACCGTGTTTCCTGCGATGGGCGAAACGTTTCGTTGTCGTTGTCGTCGGG
AGCGGCGAGTGGAGAGAGCGACGGGCCTCCCGCGGCGACGATGACGGCGG
CGGCAGCTTGTCGCGACCGCCGCTACGGCTACGATTGGGCGAGGTGGAGC
CGCGCGGCGAGGGAGTGGCACGAGGGGTGCGTTCTCGAGGACGCTAAGGC
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15:65800..67250-

>mRNA_L-elsbetiae_contig15.3590.1 ID=mRNA_L-elsbetiae_contig15.3590.1|Name=mRNA_L-elsbetiae_contig15.3590.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1464bp|location=Sequence derived from alignment at L-elsbetiae_contig15:65800..67250- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCTGGCACCGGACGTGGGTCTGACTCTTCTCTATCGAAGGTCGT
GGGGGACGAGGTGGCGGAAGACGGCGCTTCGTCGCCTCCACTTGCTGAGG
AGCTGGCTGCTGCTGGCACCGGACGTGGGTCTGACTCTTCTCTATCGAAG
GTCGTGGGGGACGAGGTGGCGGAAGACGGCGCTTCGTCGCCTCCACTTGC
TGAGGAGCTGCTTCGGAGCGAGGTGTCGTTCGTGGACAAGTGGTTGACAA
GCCACGTTTCGGACCATTCGGCCCTCAACCACCGGAAGAACGTCGTATCT
GCCCTAGTGGCCGTGTCGTCAGCTTCGGAGCGAGGTGTCGTTCGTGGACA
AGTGGTTGACAAGCCACGTTTCGGACCATTCGGCCCTCAACCACCGGAAG
AACGTCGTATCTGCCCTAGTGGCCGTGTCGTCAGGGGCGAACGAGACAAG
GCTCGACATCGCGGAGAAAGAGCGGTCGAGCAACTCCAAGCTGCTCCGGG
ACTACCCGGGGCACGAGAGCCTGTGGTGCTACCGCCGCTTCGTCTGCCAG
GCGTTCCTCGTCATCGCGCCGCGTAACGCGCTCCTCGGCGCCAGCGTCCC
CGGTGCCGGTGCGGCCGCCGTGCCCCATAACGCCGGAGCCCCGGCATCCG
CTGCCGCCGCCGCCGCCGATGCTGCCGCTCTTCTGCGAGACGCCCGCCTC
GAGGATAACCTCGACAACCCACGCAGTAGCGGAGGTGGAGGAGGGGGAGA
CCGTGTTTCCTGCGATGGGCGAAACGTTTCGTTGTCGTTGTCGTCGGGAG
CGGCGAGTGGAGAGAGCGACGGGCCTCCCGCGGCGACGATGACGGCGGCG
GCAGCTTGTCGCGACCGCCGCTACGGCTACGATTGGGCGAGGTGGAGCCG
CGCGGCGAGGGAGTGGCACGAGGGGTGCGTTCTCGAGGACGCTAAGGCGG
GGCGAACGAGACAAGGCTCGACATCGCGGAGAAAGAGCGGTCGAGCAACT
CCAAGCTGCTCCGGGACTACCCGGGGCACGAGAGCCTGTGGTGCTACCGC
CGCTTCGTCTGCCAGGCGTTCCTCGTCATCGCGCCGCGTAACGCGCTCCT
CGGCGCCAGCGTCCCCGGTGCCGGTGCGGCCGCCGTGCCCCATAACGCCG
GAGCCCCGGCATCCGCTGCCGCCGCCGCCGCCGATGCTGCCGCTCTTCTG
CGAGACGCCCGCCTCGAGGATAACCTCGACAACCCACGCAGTAGCGGAGG
TGGAGGAGGGGGAGACCGTGTTTCCTGCGATGGGCGAAACGTTTCGTTGT
CGTTGTCGTCGGGAGCGGCGAGTGGAGAGAGCGACGGGCCTCCCGCGGCG
ACGATGACGGCGGCGGCAGCTTGTCGCGACCGCCGCTACGGCTACGATTG
GGCGAGGTGGAGCCGCGCGGCGAGGGAGTGGCACGAGGGGTGCGTTCTCG
AGGACGCTAAGGCG
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