mRNA_L-elsbetiae_contig15.3589.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15.3589.1
Unique NamemRNA_L-elsbetiae_contig15.3589.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15.3589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15contigL-elsbetiae_contig15:64421..64819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.1729023-UTR-L-elsbetiae_contig15:64420..644471622815606.1729023-UTR-L-elsbetiae_contig15:64420..64447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 64421..64447 +
1691682987.034837-UTR-L-elsbetiae_contig15:64420..644471691682987.034837-UTR-L-elsbetiae_contig15:64420..64447Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 64421..64447 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.1868467-CDS-L-elsbetiae_contig15:64447..648191622815606.1868467-CDS-L-elsbetiae_contig15:64447..64819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 64448..64819 +
1691682987.0455956-CDS-L-elsbetiae_contig15:64447..648191691682987.0455956-CDS-L-elsbetiae_contig15:64447..64819Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 64448..64819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15.3589.1prot_L-elsbetiae_contig15.3589.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15 64448..64819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15.3589.1

>prot_L-elsbetiae_contig15.3589.1 ID=prot_L-elsbetiae_contig15.3589.1|Name=mRNA_L-elsbetiae_contig15.3589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MMTGARFSTTFACFASRGRGRTERERQLRGSGHLTVGQTTPPRRLGSPCR
RRSVAVAIIFGKIRGGRTRRKPPPPPRASALCGGLPLPPASRGDPLAIMC
CSMFATAAAAAVVVVLAFAAHRGG
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mRNA from alignment at L-elsbetiae_contig15:64421..64819+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15.3589.1 ID=mRNA_L-elsbetiae_contig15.3589.1|Name=mRNA_L-elsbetiae_contig15.3589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=399bp|location=Sequence derived from alignment at L-elsbetiae_contig15:64421..64819+ (Laminarionema elsbetiae ELsaHSoW15)
ACTCGATCCAGTAGTCCCACTTCCCCCATGATGACCGGAGCTAGATTCAG
CACTACTTTTGCTTGTTTTGCCAGCCGCGGTAGAGGTAGAACCGAGCGGG
AACGCCAGCTTCGGGGCTCCGGTCACCTCACAGTAGGTCAAACAACTCCC
CCCCGCCGTCTGGGCAGTCCCTGCCGCCGTCGATCTGTCGCCGTCGCCAT
CATCTTCGGGAAGATCCGCGGAGGAAGAACAAGAAGGAAGCCCCCCCCCC
CTCCGCGCGCCAGCGCCCTCTGCGGCGGCCTCCCCCTCCCGCCTGCAAGC
AGAGGCGACCCGCTCGCAATAATGTGCTGCTCCATGTTTGCTACTGCTGC
TGCTGCTGCGGTCGTTGTCGTTCTTGCTTTCGCCGCGCACAGAGGTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15:64421..64819+

>mRNA_L-elsbetiae_contig15.3589.1 ID=mRNA_L-elsbetiae_contig15.3589.1|Name=mRNA_L-elsbetiae_contig15.3589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig15:64421..64819+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGACCGGAGCTAGATTCAGCACTACTTTTGCTTGTTTTGCCAGCCG
CGGTAGAGGTAGAACCGAGCGGGAACGCCAGCTTCGGGGCTCCGGTCACC
TCACAGTAGGTCAAACAACTCCCCCCCGCCGTCTGGGCAGTCCCTGCCGC
CGTCGATCTGTCGCCGTCGCCATCATCTTCGGGAAGATCCGCGGAGGAAG
AACAAGAAGGAAGCCCCCCCCCCCTCCGCGCGCCAGCGCCCTCTGCGGCG
GCCTCCCCCTCCCGCCTGCAAGCAGAGGCGACCCGCTCGCAATAATGTGC
TGCTCCATGTTTGCTACTGCTGCTGCTGCTGCGGTCGTTGTCGTTCTTGC
TTTCGCCGCGCACAGAGGTGGTATGATGACCGGAGCTAGATTCAGCACTA
CTTTTGCTTGTTTTGCCAGCCGCGGTAGAGGTAGAACCGAGCGGGAACGC
CAGCTTCGGGGCTCCGGTCACCTCACAGTAGGTCAAACAACTCCCCCCCG
CCGTCTGGGCAGTCCCTGCCGCCGTCGATCTGTCGCCGTCGCCATCATCT
TCGGGAAGATCCGCGGAGGAAGAACAAGAAGGAAGCCCCCCCCCCCTCCG
CGCGCCAGCGCCCTCTGCGGCGGCCTCCCCCTCCCGCCTGCAAGCAGAGG
CGACCCGCTCGCAATAATGTGCTGCTCCATGTTTGCTACTGCTGCTGCTG
CTGCGGTCGTTGTCGTTCTTGCTTTCGCCGCGCACAGAGGTGGT
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