mRNA_L-elsbetiae_contig15.3588.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15.3588.1
Unique NamemRNA_L-elsbetiae_contig15.3588.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: D7G9E0_ECTSI (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 4.970e-86
Identity = 138/159 (86.79%), Postives = 152/159 (95.60%), Query Frame = 1 
Query:   55 MKFTSTVAVLACVGSAQAFVPHALPTARMSS-TTTMSAEAPASRGDFLKNAVGAVAVLGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            MKFT TVAVLACVGSA AFVPHALP ARMS+ TTTMSAE+PASRGDFLK+A GA A+LGLAAPALAEVDNP+VPFLGGG+KIDVNNANVRAYIKL GMYP+AAGKIVSNGPYSSVS+IY+IKGL++EEK+AIKKHESRF+T+DPQAMYTIDRINNGLYR
Sbjct:    1 MKFT-TVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 158
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: A0A836CCI8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI8_9STRA)

HSP 1 Score: 190 bits (482), Expect = 3.180e-56
Identity = 100/159 (62.89%), Postives = 122/159 (76.73%), Query Frame = 1 
Query:   55 MKFTSTVAVLACVGSAQAFVPHALPTARMSSTTTMSAEAPASRGDFLKNAV-GAVAVLGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            MK T  + VLA    AQAFV    P+A + ST       P  R  FLK+A   AV  + +AAPALAE+DNP+VPFLGGG+K+D+NNANVRAYIK+PGMYP  AGK+VSNGPY++V+D+YNIKGL+ +EKS +KK+ESRFVTL+PQ MY IDRINNGLYR
Sbjct:    1 MKVTGAI-VLAAACGAQAFVA---PSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: F0YKI8_AURAN (PS II complex 12 kDa extrinsic protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKI8_AURAN)

HSP 1 Score: 161 bits (407), Expect = 2.920e-45
Identity = 81/123 (65.85%), Postives = 95/123 (77.24%), Query Frame = 1 
Query:  160 SAEAPASRGDFLKNAVGAVAVLGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            SA AP +R +FL    GAV    +AAPALA+ D   +P+LGG  KID+NNAN+R Y KLPGMYP AAGKI SNGPY SVSD+YNIKGL   EK+AIKK+ESRF+TL+P  MY IDR+NNGLYR
Sbjct:   16 SALAP-TRRNFLGKVAGAVTGASVAAPALADTDYAGLPYLGGSSKIDINNANIRVYAKLPGMYPGAAGKIASNGPYKSVSDVYNIKGLKDAEKAAIKKYESRFITLEPAPMYVIDRMNNGLYR 137
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: A0A6U4G1G5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4G1G5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 8.700e-45
Identity = 89/153 (58.17%), Postives = 104/153 (67.97%), Query Frame = 1 
Query:   73 VAVLACVGSAQAFVPHALPTARMSSTTTMSAEAPASRGDFLKNAVGAVAV-LGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            +++LA V +A AFVP        +   T +  A A R +F   A GA AV    AAPA A VD   + +LGG   +D+NNANVR Y+K+PGMYP AAGKIVSNGPY SVSD+YNI GLTS EK AIKK+ESRFV L P A Y IDRINNGLYR
Sbjct:    4 LSLLATVATAAAFVPQ------QAGPQTTALNAEAGRREFFGKAAGAAAVAFAAAAPANAVVDYENIAYLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVSNGPYKSVSDVYNIPGLTSAEKDAIKKYESRFVALKPSADYVIDRINNGLYR 150
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: K0TEZ3_THAOC (PS II complex 12 kDa extrinsic protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEZ3_THAOC)

HSP 1 Score: 154 bits (390), Expect = 1.430e-42
Identity = 88/156 (56.41%), Postives = 107/156 (68.59%), Query Frame = 1 
Query:   70 TVAVLACVGSAQAFVPHALPTARMSSTTTMSAEAPASRGDFLKNAVGAVAVLGLAA---PALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            T  +   + +A AF P+A P A+    T ++AEA A R  FL    GA A  G AA    A A VD   V +LGGG  +DVNNANVRAY++LPGMYP+AAGKIV++GPY SV+D+YNI GLTS EK  IKK+ES+FV  DP A Y IDR+NNGLYR
Sbjct:    3 TAIIATLISTAAAFAPNAQPAAQ----TALNAEA-ADRRSFL----GAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGMYPSAAGKIVTHGPYKSVADVYNIPGLTSAEKEVIKKYESKFVAKDPAAEYVIDRVNNGLYR 149
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: A0A7S1XZL8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZL8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.510e-41
Identity = 73/102 (71.57%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:  229 LAAP--ALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            LAAP  A+A+VD   +P+LGG EKID+NNANVR Y KLPGMYPNAA KI SNGPY SVSD+Y+IKGL+ +EKS IKK+ESR +TL+P AMY IDR NNGLYR
Sbjct:   52 LAAPFAAMADVDYAGLPYLGGSEKIDINNANVRVYAKLPGMYPNAAAKITSNGPYKSVSDVYSIKGLSEKEKSVIKKYESRLITLEPSAMYVIDRTNNGLYR 153
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: A0A7S1Z9N8_TRICV (PS II complex 12 kDa extrinsic protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9N8_TRICV)

HSP 1 Score: 150 bits (378), Expect = 8.920e-41
Identity = 88/154 (57.14%), Postives = 110/154 (71.43%), Query Frame = 1 
Query:   73 VAVLACVGS-AQAFVPHALPTARMSSTTTMSAEAPASRGDFLKNAVGA-VAVLGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            +AVLA V + A AF P+  P    +S+T ++AEA  SR DFL  A+ A VA +  AAPA A  D   + FLGG   +D+NNANVR Y+K+PGMYP AAGKIV+NGPY +VSDIY+I GLT+ EK  +KK+ESRFV L P A + IDR+NNGLYR
Sbjct:    3 LAVLASVVAVAAAFAPNQAP----ASSTALNAEA--SRKDFLAGAMAAGVAAVAGAAPANAVRDYENIGFLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVTNGPYKAVSDIYSIPGLTAGEKEVMKKYESRFVALPPSADFVIDRVNNGLYR 150
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: A0A7S4MT81_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MT81_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.820e-40
Identity = 91/162 (56.17%), Postives = 108/162 (66.67%), Query Frame = 1 
Query:   55 MKFTSTVAVLACVGSAQAFVP--HALPTARMSSTTTMSAEAPASRGDFLKNA--VGAVAVLGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            MK     + LAC   A AF P  + +P     +TT ++AEA  SR +FL  A   GA  V G AAPA A  D   V FLGG + +DVNNANVR Y+K+PGMYP AAGKI +NGPY SV+DIYNI GLT++EK  +KK+ESRF  L P A Y IDRINNGLYR
Sbjct:    1 MKLAVLASTLAC---AAAFAPSQNGVP-----ATTALNAEA--SRKEFLAGAFATGAAVVAG-AAPAYAIRDYDNVAFLGGSQTVDVNNANVRVYLKMPGMYPAAAGKIAANGPYKSVADIYNISGLTAKEKEIMKKYESRFTALPPSADYVIDRINNGLYR 151
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: A0A7S2GXA3_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GXA3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.920e-39
Identity = 76/127 (59.84%), Postives = 91/127 (71.65%), Query Frame = 1 
Query:  148 TTTMSAEAPASRGDFLKNAVGAVAVLGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            +T ++AEA   R  F   A  A+   G+AAPA A VD   + +LGG   +D+NNANVR Y+K+PGMYP  AGKIVSNGPY+SVSD+YNIKGLTS EK  +KK+ESRF    P A Y IDRINNGLYR
Sbjct:   25 STALNAEA-GRREFFGSAAAAAIGAFGVAAPASAVVDYENIGYLGGSSIVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVSDVYNIKGLTSGEKEILKKYESRFTAKAPSADYVIDRINNGLYR 150
[Close]
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Match: A0A7S2TDD2_PROMC (PS II complex 12 kDa extrinsic protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TDD2_PROMC)

HSP 1 Score: 145 bits (366), Expect = 2.980e-39
Identity = 75/128 (58.59%), Postives = 90/128 (70.31%), Query Frame = 1 
Query:  148 TTTMSAEAPASRGDFLKNAVGAVA-VLGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTIDRINNGLYR 528
            TT+ +  A A R +F   A  A A V+G AAPA A +D   + +LGG   +D+NNANVRAY+K+PGMYP  AGKIVSNGPY+SV DIY+IKGLTS E   +KK+E RFV   P   Y IDRINNGLYR
Sbjct:    4 TTSTALNAEAGRREFFSKAAAATAAVVGAAAPANAVIDYENIGYLGGSSIVDLNNANVRAYLKMPGMYPTVAGKIVSNGPYASVKDIYSIKGLTSAEADVLKKYEDRFVAKTPSPDYVIDRINNGLYR 131
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15.3588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E0_ECTSI4.970e-8686.79PS II complex 12 kDa extrinsic protein n=2 Tax=Ect... [more]
A0A836CCI8_9STRA3.180e-5662.89PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
F0YKI8_AURAN2.920e-4565.85PS II complex 12 kDa extrinsic protein n=1 Tax=Aur... [more]
A0A6U4G1G5_9STRA8.700e-4558.17PS II complex 12 kDa extrinsic protein n=1 Tax=Min... [more]
K0TEZ3_THAOC1.430e-4256.41PS II complex 12 kDa extrinsic protein n=1 Tax=Tha... [more]
A0A7S1XZL8_9STRA3.510e-4171.57PS II complex 12 kDa extrinsic protein n=1 Tax=Pha... [more]
A0A7S1Z9N8_TRICV8.920e-4157.14PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
A0A7S4MT81_9STRA1.820e-4056.17PS II complex 12 kDa extrinsic protein n=1 Tax=Odo... [more]
A0A7S2GXA3_9STRA1.920e-3959.84PS II complex 12 kDa extrinsic protein n=1 Tax=Hel... [more]
A0A7S2TDD2_PROMC2.980e-3958.59PS II complex 12 kDa extrinsic protein n=1 Tax=Pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15contigL-elsbetiae_contig15:57420..62586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue1.6e-37
Seed eggNOG ortholog44056.XP_009040947.1
KEGG koko:K02719
KEGG Pathwayko00195,ko01100,map00195,map01100
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Photosystem II 12 kDa extrinsic protein (PsbU)
EggNOG OGs2D3K6@1,2S50I@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Ec32 ortholog descriptionphotosystem II 12 kDa extrinsic protein
Ec32 orthologEc-28_000560.1
Exons4
Model size1114
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15.3588.1prot_L-elsbetiae_contig15.3588.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15 57474..62003 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.773414-UTR-L-elsbetiae_contig15:57419..574731622815606.773414-UTR-L-elsbetiae_contig15:57419..57473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 57420..57473 +
1691682987.453884-UTR-L-elsbetiae_contig15:57419..574731691682987.453884-UTR-L-elsbetiae_contig15:57419..57473Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 57420..57473 +
1622815606.855366-UTR-L-elsbetiae_contig15:62003..625861622815606.855366-UTR-L-elsbetiae_contig15:62003..62586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 62004..62586 +
1691682987.5073195-UTR-L-elsbetiae_contig15:62003..625861691682987.5073195-UTR-L-elsbetiae_contig15:62003..62586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 62004..62586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.7880566-CDS-L-elsbetiae_contig15:57473..575621622815606.7880566-CDS-L-elsbetiae_contig15:57473..57562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 57474..57562 +
1691682987.4664757-CDS-L-elsbetiae_contig15:57473..575621691682987.4664757-CDS-L-elsbetiae_contig15:57473..57562Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 57474..57562 +
1622815606.8055863-CDS-L-elsbetiae_contig15:58320..585211622815606.8055863-CDS-L-elsbetiae_contig15:58320..58521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 58321..58521 +
1691682987.4743366-CDS-L-elsbetiae_contig15:58320..585211691682987.4743366-CDS-L-elsbetiae_contig15:58320..58521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 58321..58521 +
1622815606.8247852-CDS-L-elsbetiae_contig15:60733..608161622815606.8247852-CDS-L-elsbetiae_contig15:60733..60816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 60734..60816 +
1691682987.4824302-CDS-L-elsbetiae_contig15:60733..608161691682987.4824302-CDS-L-elsbetiae_contig15:60733..60816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 60734..60816 +
1622815606.8408735-CDS-L-elsbetiae_contig15:61899..620031622815606.8408735-CDS-L-elsbetiae_contig15:61899..62003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 61900..62003 +
1691682987.493515-CDS-L-elsbetiae_contig15:61899..620031691682987.493515-CDS-L-elsbetiae_contig15:61899..62003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 61900..62003 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15.3588.1

>prot_L-elsbetiae_contig15.3588.1 ID=prot_L-elsbetiae_contig15.3588.1|Name=mRNA_L-elsbetiae_contig15.3588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=159bp
MKFTSTVAVLACVGSAQAFVPHALPTARMSSTTTMSAEAPASRGDFLKNA
VGAVAVLGLAAPALAEVDNPIVPFLGGGEKIDVNNANVRAYIKLPGMYPN
AAGKIVSNGPYSSVSDIYNIKGLTSEEKSAIKKHESRFVTLDPQAMYTID
RINNGLYR*
back to top

mRNA from alignment at L-elsbetiae_contig15:57420..62586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15.3588.1 ID=mRNA_L-elsbetiae_contig15.3588.1|Name=mRNA_L-elsbetiae_contig15.3588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5167bp|location=Sequence derived from alignment at L-elsbetiae_contig15:57420..62586+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCTCCCTCTCCACCCTTTTAGCTCTCTACCCCACCCACCAAATATC
TAAAATGAAGTTCACTTCCACTGTCGCGGTGCTGGCTTGCGTGGGATCTG
CCCAGGCTTTCGTGCCGCACGCACTCCCCACGGCACGCATGAGGTGAGGA
CGAGAGCCGAGCAGCAGACCTGCCCTTGTTTGGTGTGTTGTAAGGACACG
GTGTGGCAAAAGGCGGCGACCAGAGCAACTTCGAGCGTTGACAGGCTGTC
CAAAACGTACGCGTTGGCTCGTGGATCACTACTGCCACAGGCGGTTATTG
TGTGTGTTGGAGCTTGGAAGCGACTTGAATCCGCATGCACGCCAGCCCCG
CGCTCGGCTTGGAACTTTTTTGACGAACGCATGACGAAAGCTCCCCCCTG
TCTTGGTCAGGTTTGACGCCCCACAAGACAAGATGCCGGGGTGTTTCTAG
CCCCAATCGTAGGCGGTTCGTGTGTGAAGATACTAGTGCTGGGCGTCTGT
GTTTTGTCGAGTTGAGAGAGGCGTGCAAATCACATGAACTCTTCGTTGAA
GACGGCAAAAAATGGTACACCAACCGCGTATTTCGCTTTTGCACATCAAA
CACGCACACATACCCAACGGAGGCCACATCTCCATTTCTTTCGGCGGTTC
CAAGCTCCAGAGAACGAGCACGTTCATCATATCGCAATCGTTTTTGGGCG
TTGAATGCTGTGCTCGGGCGCTGGCAGTTTCAACATGATGCAGCCCTTTT
GCTTGCAACACCCGTTGTATTTTATGTAGTCTCTGTGCGAGTGTATTCCG
CTCTGTGCCTGCGGCCGGCGGCTGACCTTTTGTGCCATGTGTGAGTCATG
ATTTGAATCTGCTCCACCCTCGCTCTCGTTCATGATATGTGCCAAAAAAA
GCTCCACCACGACCATGTCGGCCGAGGCACCGGCAAGCCGCGGGGACTTC
CTCAAGAACGCCGTGGGTGCGGTGGCTGTCTTGGGGCTCGCGGCGCCGGC
GCTGGCAGAGGTGGACAACCCGATTGTGCCTTTCCTTGGCGGCGGGGAGA
AGATCGATGTTAACAACGCGAATGTACGCGCTTACATCAAGCTCCCTGGC
ATGTAAGTGTGTGTGGTACTACCGGTACACGCGGAAAAGATACCCACACC
CTACAATACGTAATTTATGAAGGTAGCAAAGTGTCCGCAGATTGTATGTA
TTTTAGAGCGGGGAAAATTCGTTGTTTTCTTAGTACAATATGCTCGTCTA
ACTGAAAAGGGAGAGAGGACGTTGAAGCTCCCCCACCAGCACTCGCTTAG
ATGTGTACCATGCTCTGCTGTGTAGCTGTTTTTTTCTCGGACTCGCGTGC
CGTCAGTGCAGTAAAAAAGGCAGTTGCCTAGTTTTATCGATGTATAAAGG
CCGTACGTAGCTTTTTTGTATCTGCGTTGACTGGGTAGTTTTGGAAAAAC
GCATGTACATGCACGAGAGAAGCCGCCGGCACAGCGCGGACAATGGCGTC
GGCAAAAGAAGAGACAGGCAATAAATACACTTGAAAAAATGGTATACAAA
GTATATCTGTACATGGCAGTATATTCCGTCGGCGGTGGCGGCTGTTTTTT
CTGCGGTAATAAAGTTTCCGCCTGCCGATTAATTACGATACGACATGGTG
TCCGGAGGAAAATGTTGCAGTTGTATTCAACGGGTTGTGGCTTGCTTTGT
GGGCGCGAGACCACTCGGACTATTTCAGATGCACGCAGGCGTATAGTTTA
CACCCTTTTACTGATCACACAGACTTTTTTCACGTGTGGATTGGACCATG
AGGCTACTCGAGCACCCTTTTATTTTTCGCGTTAATGAACATTCTGCCCT
TGCCTCGATTCTTCTCAGAAAATCGACTGGGAATGGTGCATTTACAGCGG
GTTAACCGATATGTCATGACGCACGCGAGGATTTCCAAACATGTAGCTTA
GTACTGCAGTTGGGTACATTTGCTGCGCCTACTGGTCCATTGGGGCTGGC
ACAAGCTGTGTCCCGACGAGAACTCATCAGTGTTTTTTGCGAGCACAAGA
GTAACACTGGCAACACAAACAAGACTGCCTTTCAGGCGTCGCTCATGGGC
AAACACCCCGGAAGGTGAAGCAAGAGAGCAGACCAAGCGTCCGTCCCTGC
ATGCTGTTGGAACACCGGGGGATTAAACAAAAAACTCCGGCGAAGAAATG
TTAATGCTGCGCCGGCTTTTCCCGTGTGTGGTCCCCAAAAGTCCCCAAAA
AATGGAACAAAAACAGTTCAAGTACTTCATTACTGTTCGAGTTGGGTAAC
ACTACAAGATGGATCCAAGTTTTTGAGAGAAATGTCGGCTGTTTTTAGCG
CGGAACCGTAGCCCATCAACAGCTACTCACATTAAAGTGAAAACTTGCCT
ACGTCGCCACGTGCGTGGCTTGCAACCGACTCCAGACCGTGCTTGCGATG
GACCTTAAAGCAAAACTGTCCTGCCCCCACCTGTCTCAAGGTAGTCGAGA
AGGCGCTTAGTTATCAAGCGGGGGGGGGGGGTGCGCGCCACCTCCACCCT
ACAGGAAGGGCTGCGTTTTCTGCTGTCGACCGACGACTTTTGAAAAGAAA
GATCGCAGCAAGTTTGCAGAAAAATGCAGAACAACGAGGGGACAAAAAGC
TCAAACAGCCAGGTTGCTCATAATAACGACCACAGCTACCGTGTCTGTTA
CTAGATTTGCTCATTTCAAACCCGGATGTCAAAAAACAGCCTGGGCGTAA
GCCAATCTCCGCTGGTCACAGAAAAGAGTCCGTGTGCACTCACTCTGACC
CTCAACCTTTGGCAGCTGTCTTAGGGTTTTGTACCTAGGTGCTGGCAAAG
AGCGACAATCAAAAGTTAAATTATTTGCTGGTGTTCGGTCGTGTTTTTTT
GGCGCAGCCCCTCTCGCCGTTCAGCCTCCGAGCGCTGCTGCTGCTCGCTT
CACGACGTCCATATTTATTTTCACGAAATAATGCAAAGCGAGCGTAAACA
GCGTATATGGGTATATCTACAGGGATTGATTGTACCGTGATGACAACAGC
AATATTTTTTGCCTGGTCTCTCGTATGACTTGATTTTCGCTGCCGCTTTC
GCCTGCGACCTCCCGTCGTCGTGAACTTTACTTCTCAAGCACTGCGGCGC
GCGGGAGCAACGGAATAGTGCATCTTGGAGCTGCCACCCTGGTATTAATG
ATACACCTACCGGCTCGTCCTTCTCTCGACTCAACTCGACGGTTCCCCTC
CCCAACCGCCCTTCCTTCCTGTTTCCGTTTTCGCCTGTGCTTTCGTGCGA
TGCGGGCGATTCAGGTACCCTAACGCGGCGGGAAAGATCGTATCGAACGG
CCCTTACTCGTCCGTGTCGGACATCTACAACATCAAGGGGCTCACCAGTG
AGTGGAAGCGATGTGTGACGACTAACCTTCGTTTTGCCGTGATCGTACCG
AGGCTGAGAGGGTGTAGTAGGTGCAGCCGCCGTTTTGGTAACATTAGGTT
GAGCTGAACTACACTCGCAGAAGGGTGTCCTTGTCGTATTACCAGCTGGA
TAAACTCGCACATCCCAGGTGATGAAATCTCTCGAAGGTTGATGACGGAC
GCCGGGTTGCCCGTTTACCCAGTGGGGTGGCCCTTTGCGGCTCGAGCACG
CCCTTCGACCATGTCTGGACTGCTTGGGTCGTTACCCACATTACTTCGTT
TACGCCGTGCAGAAAGATGACAGGTGTTGAAAATTTCGCATCATCTAAGT
GACAACGAGTGGTACCGCAGCAGTGTCGGTACGTAGCATCGCATCCCGCT
CCAACACCCCGAAACAGCAGCAGCTTAAATTTGGGGGCTTCCATACGAAT
GCGTTTGAACCGCGCATTCAAGTTCCTATGCTGTAGAGGCTTTCGTTCGA
CCGCGTTTGAGCCGCATCTTCAATCAAGTTCCTTTCGAAGTTCCTGTGCA
ACGGTTTTTGCGTTTTGCCGTGCTGGGTACTGTAAACTGTCAACTAAAGA
AGCGCGTTCGCTCCAGCTGGATTTAAGTTTGTTTTACTATTACTCGTCAA
GTTCTGAAAAGCATCCCTGTTGGCTTCATTCACGGTCATGGAGTCGTTAC
TTTCGCTGGAAGTGAGAGGTTTGTTGCGTACGCCTCCATCCCCTCTACAC
GTCCCGCAACCGAACGCTGTTTAATAGAAATATAGCGTAATGATTACTTC
ACACGCCCAAGACGTGATCACTGTCGCGGAGAAACGTCCACGAGGGAGCC
GTTTTGCGCTCTTCGTTGAAAATCGTCGTCCGCCGACTGTTTTGCCTCCC
CGCCTTGACGTCGGTGCTTCCCAAGAGCAAATGCTCAAGTTTGTCTGGTG
TTCTGTGTAGATGCCGAAGTGATTCGCGTCGTTACAATCTGCCCTTGTAT
CAACATATGTATATACGTGAAACGTACTCTTGACTGTTTTTTGTTCCGTT
CCCCCTCGGTATTTTTTTTTTCGCGTCCAGGCGAGGAGAAGTCGGCGATC
AAGAAGCACGAGAGCAGGTTTGTGACCCTTGACCCGCAGGCCATGTACAC
CATCGACCGCATCAACAACGGCCTCTACCGGTAAACTTGCCACGCCACCA
GCTGCTGCCTGCTGCGGAAGCTTTTTGTGACTCGTGGGCTGACGAGGGCA
TCTAGGAACGGCTGGCCGTGGCCTTCACAGCCCTCGGGGATGTTGCAGAT
ACATGACTGAAGGCTGCGTCCCCTATGGCTGGCTCGCATTCGACCACCCA
CACGAGTGTCTGTGCTCTGGATGAGGAAGACAGACCGGCTCGACATTCAA
GTGAACTGCTATAGAAAGCGCACGGGCGTCGGTGTTGCTGCACCCCTCCC
TGCTTGCCCGTCTGAGAATCGGGGCGGTTGTTTTCTGTAGATTTTGTTAT
TTTTGCTAGACTTTGTGGAGTGAGATAGGCACGCTCGCTCGCTTTTGTTT
TGCGCAAAACAGAGGGGGGTAGGGGGGCGATTGCATCTGTGCGTGTTCCG
TGGTTGCTGGCAAGCGCGTCCTGTTGTTTGGAGTTAAGTTTGTTGGCGCT
ACCGGGGCCTCTGTTTCGAAAGGCTTCTTTCTATCTCACTTGATTTGTTT
TTTGTTTTTGTTGGTAGGATTACGCGTACGGAAACGCGGTCTTGGCTGTT
TCTTAGCGAGCGGAGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15:57420..62586+

>mRNA_L-elsbetiae_contig15.3588.1 ID=mRNA_L-elsbetiae_contig15.3588.1|Name=mRNA_L-elsbetiae_contig15.3588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig15:57420..62586+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGTTCACTTCCACTGTCGCGGTGCTGGCTTGCGTGGGATCTGCCCA
GGCTTTCGTGCCGCACGCACTCCCCACGGCACGCATGAGATGAAGTTCAC
TTCCACTGTCGCGGTGCTGGCTTGCGTGGGATCTGCCCAGGCTTTCGTGC
CGCACGCACTCCCCACGGCACGCATGAGCTCCACCACGACCATGTCGGCC
GAGGCACCGGCAAGCCGCGGGGACTTCCTCAAGAACGCCGTGGGTGCGGT
GGCTGTCTTGGGGCTCGCGGCGCCGGCGCTGGCAGAGGTGGACAACCCGA
TTGTGCCTTTCCTTGGCGGCGGGGAGAAGATCGATGTTAACAACGCGAAT
GTACGCGCTTACATCAAGCTCCCTGGCATCTCCACCACGACCATGTCGGC
CGAGGCACCGGCAAGCCGCGGGGACTTCCTCAAGAACGCCGTGGGTGCGG
TGGCTGTCTTGGGGCTCGCGGCGCCGGCGCTGGCAGAGGTGGACAACCCG
ATTGTGCCTTTCCTTGGCGGCGGGGAGAAGATCGATGTTAACAACGCGAA
TGTACGCGCTTACATCAAGCTCCCTGGCATGTACCCTAACGCGGCGGGAA
AGATCGTATCGAACGGCCCTTACTCGTCCGTGTCGGACATCTACAACATC
AAGGGGCTCACCAGTACCCTAACGCGGCGGGAAAGATCGTATCGAACGGC
CCTTACTCGTCCGTGTCGGACATCTACAACATCAAGGGGCTCACCAGCGA
GGAGAAGTCGGCGATCAAGAAGCACGAGAGCAGGTTTGTGACCCTTGACC
CGCAGGCCATGTACACCATCGACCGCATCAACAACGGCCTCTACCGGTAA
GCGAGGAGAAGTCGGCGATCAAGAAGCACGAGAGCAGGTTTGTGACCCTT
GACCCGCAGGCCATGTACACCATCGACCGCATCAACAACGGCCTCTACCG
GTAA
back to top