mRNA_L-elsbetiae_contig1498.3569.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1498.3569.1 vs. uniprot
Match: D8LHR5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR5_ECTSI) HSP 1 Score: 275 bits (703), Expect = 9.650e-83 Identity = 240/510 (47.06%), Postives = 284/510 (55.69%), Query Frame = 1 Query: 64 KLSAAEKKTIEFGLAVVILSACPSAGPSAAVEGCGK-------QRASKQLRLWQGSCLGGLAEAGS--RARPDLAE---TSHRQQQREAGPVGGRTDS----LRAAGAAEL-HVQGNQPGRCGVVPAGSFVSPAA-EPMRRLLASDGGSDLRALGAVALSGCQSESARAVQKEALEGLWHGDCSPEMVSLFAKQMLEQVVIRGQG-GGGQVYRHVLDLMVSITADVAAXXXXXXXXXXXXXXXXXXXXXXXXVAVSMLARRLDVGLAVSQALDAVLVQLARELRRGFGSGGAGRVVVTGTRSSRQHHSPSXXXXXXXXXXXXXXX------------------------GLYLDAYEAATACLLRAFNCLAQGDPERERRAXXXXXXXXXXSRNRGDSLRPNQPPGTESRGGNKRSSDES---FGVRNRGQGQGASIRQFGPTASERVAERGVLPR---GWRDASARRNAWTQRKLEVLAEATTTMSSFRMGQLRLQRIVARVYEWARSA 1446 +LSAAEKKTIEFGLAV IL++ P AG ++ G QRASKQLRLWQG+CLGGLA+ GS R RP+ + R R GG D+ + + AEL H + +Q G V +G S AA EPM RLL S GSDLRALGAVALSGC+S+ ARAV+KEALEG+WHGDCSP VSLF ++MLEQVV+ GQ G G YRHVLDLMVSI +VA + ++RR+DV LAVSQA D LVQLAR LR G G +TGT+ + + + XXXXXXXXXXXXXXX GL+LDAYE+ A L AF+ L + DSL PN P G++RSS + F GQ G R PT + V ER + GW DA ARRNAWTQ KLEVLAEATT +SSF MGQLRLQR+V+RVYEWAR A Sbjct: 8 QLSAAEKKTIEFGLAVAILTSGPWAGECSSKRSSGTSGDPSSDQRASKQLRLWQGACLGGLAQVGSGTRRRPEGKRPHPATTRDDDRGIALAGGSCDNTSHGIGSTFPAELSHARRSQRGGPFPVTSGGCGSAAAVEPMGRLLTSGTGSDLRALGAVALSGCRSDGARAVRKEALEGIWHGDCSPSTVSLFVREMLEQVVLCGQCVGSGHTYRHVLDLMVSIVEEVAETASVVAAANANANTGPSQPHDWSGNDAASISRRIDVALAVSQAFDTTLVQLARGLR------GGGICSITGTQGLQVNTTSGXXXXXXXXXXXXXXXXXXRAMVAQPQSREATALAQAGRAGLFLDAYESVVAGLGNAFSHLELAEHS---------FGDDDGGDGGVDSLPPNGSPT-----GDRRSSPDELLLFTHLTGGQHLGTPNR---PTTT--VPERNMPANHGLGW-DAEARRNAWTQTKLEVLAEATTLLSSFPMGQLRLQRVVSRVYEWARLA 491 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1498.3569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1498.3569.1 >prot_L-elsbetiae_contig1498.3569.1 ID=prot_L-elsbetiae_contig1498.3569.1|Name=mRNA_L-elsbetiae_contig1498.3569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=468bp MDAAGQKLSAAEKKTIEFGLAVVILSACPSAGPSAAVEGCGKQRASKQLRback to top mRNA from alignment at L-elsbetiae_contig1498:8832..13477+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1498.3569.1 ID=mRNA_L-elsbetiae_contig1498.3569.1|Name=mRNA_L-elsbetiae_contig1498.3569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4646bp|location=Sequence derived from alignment at L-elsbetiae_contig1498:8832..13477+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1498:8832..13477+ >mRNA_L-elsbetiae_contig1498.3569.1 ID=mRNA_L-elsbetiae_contig1498.3569.1|Name=mRNA_L-elsbetiae_contig1498.3569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2808bp|location=Sequence derived from alignment at L-elsbetiae_contig1498:8832..13477+ (Laminarionema elsbetiae ELsaHSoW15)back to top |