mRNA_L-elsbetiae_contig14952.3559.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14952.3559.1
Unique NamemRNA_L-elsbetiae_contig14952.3559.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: D7FNL8_ECTSI (Homoserine dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.130e-12
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 GINMIEKNTPQDDYPGSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEADLRH------------LLAELMFGATVSSDSVR 240
            GI +I   T Q+DY G K+ KV G MN T NFMLSK ESEG DYG+ L +A++LG+AEAD               LL +L FGATV SD ++
Sbjct:  206 GIPIIA--TLQNDYLGDKILKVCGIMNGTTNFMLSKMESEGADYGEVLKEAQDLGYAEADPTADVEGFDVQAKIALLTKLAFGATVPSDLIQ 295
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A7S3JYH8_9STRA (Homoserine dehydrogenase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYH8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.470e-7
Identity = 35/74 (47.30%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   52 KVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEADLRH------------LLAELMFGATVSSDSV 237
            +V+ V G MN T NFMLSK E+EG DYG  LA A+ LG+AEAD               +LA+L FG TV  + V
Sbjct:  144 QVHSVKGIMNGTTNFMLSKMEAEGADYGQVLAQAQALGYAEADPTADVEGHDVCAKIAILAKLAFGITVPPEKV 217
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A6S6QWJ7_9HYPH (Homoserine dehydrogenase n=1 Tax=Terrihabitans soli TaxID=708113 RepID=A0A6S6QWJ7_9HYPH)

HSP 1 Score: 61.2 bits (147), Expect = 7.560e-7
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 GINMIEKNTPQDDYPGSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEAD---------LRHLLA---ELMFGATVSSDSV 237
            GI +I+  T ++  PGS++ +VSG +N T NF+L++ E +G+ +G+ALA A+ LG+AEAD           H LA    L FG  + +D++
Sbjct:  137 GIPIIK--TLREALPGSRLDRVSGILNGTCNFILTRMEEDGLSFGEALALAQKLGYAEADPTFDIGGFDAAHKLAILTSLAFGTQIDADAI 225
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A2N6AXJ6_9HYPH (Homoserine dehydrogenase (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6AXJ6_9HYPH)

HSP 1 Score: 59.3 bits (142), Expect = 1.970e-6
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   25 TPQDDYPGSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEAD---------LRH---LLAELMFGATVSSDSV 237
            T ++   G+ + ++ G MN T N++L++ E+EG D+G+ LADA+ LG+AEAD           H   LL  L FG  V  DS+
Sbjct:  144 TLRESLAGNDIKRIYGIMNGTCNYILTRMEAEGRDFGEILADAQKLGYAEADPTADIGGFDTAHKLALLTSLAFGTEVDLDSI 226
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A068FP01_9ZZZZ (Homoserine dehydrogenase n=1 Tax=uncultured organism TaxID=155900 RepID=A0A068FP01_9ZZZZ)

HSP 1 Score: 59.7 bits (143), Expect = 2.410e-6
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:   31 QDDYPGSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEADLRH------------LLAELMFGATVSSDSV 237
            +D  PG KV +VSG +N T N++L++ E EG  +G  LADA+ LG+AEAD               +L  L FG  + +D +
Sbjct:  150 RDAVPGQKVSRVSGILNGTCNYILTRMEREGAAFGSVLADAQRLGYAEADPTFDVDGFDTGHKLAILTSLAFGTQIEADDM 230
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A1Y4AN27_9ACTN (Homoserine dehydrogenase n=4 Tax=Collinsella TaxID=102106 RepID=A0A1Y4AN27_9ACTN)

HSP 1 Score: 58.5 bits (140), Expect = 5.850e-6
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 GINMIEKNTPQDDYPGSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEAD 180
            GI ++  N  +    G+++  V+G +N T N+MLS+ E+EG+DY + LADA+ LG+AEAD
Sbjct:  143 GIPIV--NALEHALTGNEILTVAGILNGTTNYMLSRMETEGLDYDEVLADAQRLGYAEAD 200
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A3D4NWP6_9BACT (Homoserine dehydrogenase n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A3D4NWP6_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 6.510e-6
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   46 GSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEAD 180
            G+++ +V G +N T NF+L+K E+EGMDYG ALA A+ LG+AEAD
Sbjct:  174 GNRIKEVKGILNGTTNFILTKMETEGMDYGAALAMAQKLGYAEAD 218
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A831PU51_9BACT (Homoserine dehydrogenase n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A831PU51_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 8.230e-6
Identity = 31/76 (40.79%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   46 GSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEADLRH------------LLAELMFGATVSSDSV 237
            G+ V +V G +N T NF+L+K E+EGMDYG ALA A+ LG+AEAD               +L+ ++FG ++ +  V
Sbjct:  174 GNAVREVKGILNGTTNFILTKMETEGMDYGPALALAQKLGYAEADPTADVEGHDALAKVVILSNVLFGGSLKTSDV 249
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A6I2Y9M8_9ACTN (Homoserine dehydrogenase n=2 Tax=root TaxID=1 RepID=A0A6I2Y9M8_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 9.720e-6
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   46 GSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEADLRH------------LLAELMFGATVSSDSV 237
            GS++ ++ G +N T NF+LS+    G DY D LA+A+ LG+AEAD               +LA L FG +V  DSV
Sbjct:  133 GSRIDRIHGIVNGTTNFILSEMARTGADYADVLAEAQELGYAEADPTEDVAGLDAAAKISILARLAFGTSVDPDSV 208
[Close]
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Match: A0A1M2ZZ01_9SPHN (Homoserine dehydrogenase n=4 Tax=unclassified Sphingomonas TaxID=196159 RepID=A0A1M2ZZ01_9SPHN)

HSP 1 Score: 57.8 bits (138), Expect = 1.010e-5
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   49 SKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARNLGHAEAD---------LRH---LLAELMFGATVSSDSVRKR 246
            +++ +V G +N T NF+LSK E+EG D+GD LA+A+ LG+AEAD           H   +LA L FG   + D V  R
Sbjct:  150 NEIARVQGILNGTCNFILSKMEAEGRDFGDVLAEAQALGYAEADPSFDIDGVDAAHKLSILASLSFGTRPAFDDVAIR 227
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14952.3559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNL8_ECTSI1.130e-1250.00Homoserine dehydrogenase n=1 Tax=Ectocarpus silicu... [more]
A0A7S3JYH8_9STRA5.470e-747.30Homoserine dehydrogenase n=1 Tax=Aureoumbra lagune... [more]
A0A6S6QWJ7_9HYPH7.560e-738.46Homoserine dehydrogenase n=1 Tax=Terrihabitans sol... [more]
A0A2N6AXJ6_9HYPH1.970e-638.55Homoserine dehydrogenase (Fragment) n=1 Tax=Hyphom... [more]
A0A068FP01_9ZZZZ2.410e-638.27Homoserine dehydrogenase n=1 Tax=uncultured organi... [more]
A0A1Y4AN27_9ACTN5.850e-645.00Homoserine dehydrogenase n=4 Tax=Collinsella TaxID... [more]
A0A3D4NWP6_9BACT6.510e-657.78Homoserine dehydrogenase n=1 Tax=Candidatus Aminic... [more]
A0A831PU51_9BACT8.230e-640.79Homoserine dehydrogenase n=1 Tax=Candidatus Aminic... [more]
A0A6I2Y9M8_9ACTN9.720e-640.79Homoserine dehydrogenase n=2 Tax=root TaxID=1 RepI... [more]
A0A1M2ZZ01_9SPHN1.010e-542.31Homoserine dehydrogenase n=4 Tax=unclassified Sphi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14952contigL-elsbetiae_contig14952:1935..4088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue2.9e-12
Seed eggNOG ortholog2880.D7FNL8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Homoserine dehydrogenase
EggNOG OGs2QT5B@2759,COG0460@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size947
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14952.3559.1prot_L-elsbetiae_contig14952.3559.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14952 2516..4079 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.1151352-UTR-L-elsbetiae_contig14952:1934..25151622815604.1151352-UTR-L-elsbetiae_contig14952:1934..2515Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14952 1935..2515 -
1691682985.8027358-UTR-L-elsbetiae_contig14952:1934..25151691682985.8027358-UTR-L-elsbetiae_contig14952:1934..2515Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14952 1935..2515 -
1622815604.1862414-UTR-L-elsbetiae_contig14952:4079..40881622815604.1862414-UTR-L-elsbetiae_contig14952:4079..4088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14952 4080..4088 -
1691682985.8384154-UTR-L-elsbetiae_contig14952:4079..40881691682985.8384154-UTR-L-elsbetiae_contig14952:4079..4088Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14952 4080..4088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.1521008-CDS-L-elsbetiae_contig14952:2515..27061622815604.1521008-CDS-L-elsbetiae_contig14952:2515..2706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14952 2516..2706 -
1691682985.8129034-CDS-L-elsbetiae_contig14952:2515..27061691682985.8129034-CDS-L-elsbetiae_contig14952:2515..2706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14952 2516..2706 -
1622815604.161894-CDS-L-elsbetiae_contig14952:3289..34011622815604.161894-CDS-L-elsbetiae_contig14952:3289..3401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14952 3290..3401 -
1691682985.8211167-CDS-L-elsbetiae_contig14952:3289..34011691682985.8211167-CDS-L-elsbetiae_contig14952:3289..3401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14952 3290..3401 -
1622815604.1751995-CDS-L-elsbetiae_contig14952:4025..40791622815604.1751995-CDS-L-elsbetiae_contig14952:4025..4079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14952 4026..4079 -
1691682985.8301125-CDS-L-elsbetiae_contig14952:4025..40791691682985.8301125-CDS-L-elsbetiae_contig14952:4025..4079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14952 4026..4079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14952.3559.1

>prot_L-elsbetiae_contig14952.3559.1 ID=prot_L-elsbetiae_contig14952.3559.1|Name=mRNA_L-elsbetiae_contig14952.3559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MIEKNTPQDDYPGSKVYKVSGFMNATMNFMLSKAESEGMDYGDALADARN
LGHAEADLRHLLAELMFGATVSSDSVRKRTQSERAGGCFSVSGGVVGLCA
SSESAPMIGRYRGETVNP*
back to top

mRNA from alignment at L-elsbetiae_contig14952:1935..4088-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14952.3559.1 ID=mRNA_L-elsbetiae_contig14952.3559.1|Name=mRNA_L-elsbetiae_contig14952.3559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2154bp|location=Sequence derived from alignment at L-elsbetiae_contig14952:1935..4088- (Laminarionema elsbetiae ELsaHSoW15)
GGTATCAACATGATCGAGAAAAACACACCGCAAGACGATTACCCCGGGAG
CAAGGTCTACAAGGCAAGAAACTGACACGGATTGTATTTTCCTGGCCACT
ATACATTATCACCATCACCCCTCTCCTCGTGTATATTTTTAGTGTGATTG
CTACCCTTTTCGACTTGCAGTGGCGGCGGCGAAAGCCCGGTGGCTGCGAG
ATTGAAGATGGCACCGTACTTGTGTCGGGGCAATGCTTTACTCGCGTGTC
AGAGCTCAGTGGGGCTGTGCACATGGTTATCATGTGTATGCACGAGGTCC
GTTGACTTAGGTCGCCTCACGTGGCACGTAAAAAATATAACGCATCTCCT
TTGTCAGCGATATGTATGTGTCGGTTGAGCATCCATCGTTTTGGCCTTGT
CCTTTTTCGTAACAAAAAAAAGTCCCGTTCAATTGTGTTTTTCCGGAAAA
CCGAAAAAACTGGTAGAAAGAAATCAAATACCGCTGGTTTCTACGCAGCT
AGATACCGAAATGGTACGCTGCTTCCAAATTTGCTCGGACCCTCGTCCGA
GCGCTGGCAAACGTGTGGGTATCCGTAAAAAAATAGAAAAAAATAGAAAA
AAAAAGAAACGCCGAAATTTGTTTTTTACGTGGGCGGTGTGGGTAATTTT
CAAAGTTGGACCCCCCCCCGCCGATCTCACGAAAAAGGTGTCGGGCTTCA
TGAATGCAACGATGAACTTCATGCTGTCCAAGGCGGAGAGCGAGGGTATG
GACTACGGAGATGCGTTGGCGGACGCGCGGAACTTGGGTCACGCCGAGGG
TGGGTGGCTTCTTCTGTCGTGAGCGGGATGGGATCAATGCCGCATTTTCC
AGCTGACATTGAGAAAACTACTGTGCGTGTGTGTGTATTGACATACATCT
TCGCAAGTACATATGTGTGTGTTTTTTCGACAGGAGAGTCGTACGTACGA
AATGGGCACAGGACACACCTAGCACGCTGTCGTATTAACAGCTGCAACCA
GCGCTCTGTTGCGAGTATCTCAGCCGGGCTTTCGGTTGGGATACGAACGT
GAGGGTTAGTACATGCAGACTTCATGCTTTACCACGTTGGTACGTCGTGT
AAGTGTTCCTATCATTTTCCAACACTGCCCCTATGCTAGTCTCTGTCGAG
AAGGGATACCGCCTCAGGCGTGCTCGAGTCTAAAGAAAGGATCTTCCAAG
CACCGCACCCCCGCTAACGACGGTTAATTTTTTGGTTCTCCTCCCATTAT
TGGCATATCCGTCGTCTGCCCCACTGGCCCCCATACTCCACTACGACTAG
CTAGACGACCCAACTGGGGTCACACAGGCTAATACGATGCTCTGATTCCG
TGCCGCTCGCCACTCTTGCGCGTTGTATGTAGCCGACCTGCGGCACCTCC
TCGCGGAGCTGATGTTCGGCGCCACGGTGTCGTCCGATTCGGTAAGAAAG
AGAACACAAAGCGAGCGCGCGGGGGGGTGTTTTTCTGTTTCTGGTGGGGT
TGTAGGACTCTGTGCCTCTTCCGAATCCGCACCGATGATTGGAAGGTACA
GGGGTGAAACCGTGAATCCGTGAAATCGTGAAATCGTGAACTCTACCGGT
GAAAGGGGCCCCGCATCGGGTATGAATCCACGCAAATGGACGCTTTGACT
AGCAAGGCATGTTTTAGGTTTTAGCGTGCCACGGCCGTGAGCTGCGACTT
GTGGGTGAAAAGCGAGGGGTGACAGCAGTGGCATCGGGCCTTGACGAGGT
GGTATTGAGAGGAAAATATCCCATCTACTTATCGTATTTCCTGCGGTCTC
AACGCCGTTTTTTTTGTATCTGCCAGATTGTGCGATGTCATGCTTGGGTG
GTGCATGCACCAAAAGAGCTGGAACCTACCGAAGGTGACACGAAATACCA
CACCCCCTGGACAGATTTTCAAAGCTCGGTCCCTCCCCAGCAAGAAGAGC
GTCATGCCGAAAGGGGGTGGCGTTGGAAAGATCTAGTCGAGAGATGTCCG
AAAATGTTCTTTTGGTGCTGGCACCCTCTTCGTTACGGATTAATGGAGCT
CTAAAAGTCGGTCCAGGGTGTGTGGTATCTTGTGTCACCTACGGTATGTA
GTAGTGCTGGGTGTTCCAGCCCTGGAACAGCCAGCACCACTTCATAGCCT
ATAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14952:1935..4088-

>mRNA_L-elsbetiae_contig14952.3559.1 ID=mRNA_L-elsbetiae_contig14952.3559.1|Name=mRNA_L-elsbetiae_contig14952.3559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig14952:1935..4088- (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGAGAAAAACACACCGCAAGACGATTACCCCGGGAGCAAGGTCTA
CAAGATGATCGAGAAAAACACACCGCAAGACGATTACCCCGGGAGCAAGG
TCTACAAGGTGTCGGGCTTCATGAATGCAACGATGAACTTCATGCTGTCC
AAGGCGGAGAGCGAGGGTATGGACTACGGAGATGCGTTGGCGGACGCGCG
GAACTTGGGTCACGCCGAGGGTGTCGGGCTTCATGAATGCAACGATGAAC
TTCATGCTGTCCAAGGCGGAGAGCGAGGGTATGGACTACGGAGATGCGTT
GGCGGACGCGCGGAACTTGGGTCACGCCGAGGCCGACCTGCGGCACCTCC
TCGCGGAGCTGATGTTCGGCGCCACGGTGTCGTCCGATTCGGTAAGAAAG
AGAACACAAAGCGAGCGCGCGGGGGGGTGTTTTTCTGTTTCTGGTGGGGT
TGTAGGACTCTGTGCCTCTTCCGAATCCGCACCGATGATTGGAAGGTACA
GGGGTGAAACCGTGAATCCGTGACCGACCTGCGGCACCTCCTCGCGGAGC
TGATGTTCGGCGCCACGGTGTCGTCCGATTCGGTAAGAAAGAGAACACAA
AGCGAGCGCGCGGGGGGGTGTTTTTCTGTTTCTGGTGGGGTTGTAGGACT
CTGTGCCTCTTCCGAATCCGCACCGATGATTGGAAGGTACAGGGGTGAAA
CCGTGAATCCGTGA
back to top