mRNA_L-elsbetiae_contig1494.3553.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1494.3553.1 vs. uniprot
Match: D7G0P3_ECTSI (Imm downregulated 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0P3_ECTSI) HSP 1 Score: 726 bits (1873), Expect = 1.110e-244 Identity = 526/1012 (51.98%), Postives = 609/1012 (60.18%), Query Frame = 1 Query: 457 LLSDTVQVMHSQINLLRQTVLDLRRTESREMGDLRRQIDALEKSGPGNAKVRLDDIDTRLRTMEQQPRGSGMDAGQNERLELLEGAMWGGSTDIARKYSGPEIPPPDAAEKQDETXXXXXXXXXXXXXXXXXXASDAAAKKAPKMKAVARAVLMFGGMALCPKVDTLQSQLGTIGERERKIEEKVAVLEGKFVADAEREKATAAERRLKNLEQLLHQTSVLHRTLLADTKVVAAAKG-----GDTAEEEACWAGTGARGEISTDEARTQGFGEEPATEEELLLKARARLAWLEAHADRTPPLVTSATTAVGGVTDGDGSGPEGDDEAAAHDVQNDGDIASEGTLASEREGG----------GQQRVAGTSPTLAWAMPREEEGNSDGGAAM--------------TDGEVARLWSRMHKIDNGIQARADER-RLQSQVRSQTVSVPPLEVTGADLRDLREALEQSSTALGLKLQDGLGSLSGRIELLEDNVRMVKARALSRSALDAPPTLAAPAD---------------------DSRIEQILAGVLGDEIPMVRRNLEEVRDRVASLEAAL-EDAAGPPGLTAEEAATAXXXXXXXXXXXXXXXXXXXXXX-LEERVDRRAREEARRAREEREAAEARGAMRRVSGTVSAYTADLATRLEGLRSEHEQQGAALTRTAEEIAAAEASLKDFGSELVGLGQVANSVSMVVDGKADQTDVEALKAAMQRLDSTVAAKARGSSATAARDAEAFGALQAAFKDMSTSMEGSMRKLQQAQAAAGSIKIKPLLDRVVKELTVAGMLPDLDVSQGVAARAMCLSCNRPIGPAGDQSPSRFANQFRGGTLGSRMEKVSSASPLQINKPSVIWRGGFKMPPRRVPATAYDRQXXXXXXXXXXXXXXXXXXXXAGTTG------------MLGGKGAPPSQTLPASSPVRVGAGLDAFRDSKLPGIPNMLDS--AGGSERGASGA---SVVGVGGRGARVSVGSLSASTDAPHRARYVRQR 3282 L DTVQVMHSQI LLRQTVLDLR T+++E+GDLRRQIDALE SGPGNAK R DDID+RLR +EQQP GSGM +GTIGERE +IE +VA LE K +ADAE KA AAER+ + L++L+ QT VL T++A+ + A +G + A+EE CWAG R ++ + G G+ A EEEL+L ARARLAWLE+ A+ TP + G GD + E +D+ A D +GDI L EGG GQ+R AG P AW P +E DGEVARLW M +I++ I R +R RL S+ V+ EVTGADL++L++++E SS A+G KL++GL +L R+ LLE NVR VKARALSRSALDA DSRIE+ILAGVLGDEIP +RR+L V +RVA LEA + ED AG GL+ EEAA A LEERVDRRAREEAR AEARGAMRRVS TVSAYTADLATRL+GL+SEHE+QGA +TRTAEE+AAAEA L+ GSELVGLGQVANSVSMVVDGKADQTDVEALK AMQRLD+TV AKARGSSATAARDAEA GALQ AF+DMS SMEGS+RKLQQAQAAAGSIK+KPLLDRVVKELT AGMLPD D QG R+MCLSCNRP+ AGDQS SRFA+QFRGGTLGSRMEK+SS +P+ INKPSVIWRGGFKMPP RVPA+A++RQ XXXXXXXXXXXXXXXXX AG G Q LP S V G+DA RD +LPGIPNMLDS AGG E G VVGVGGR RVSVGSL+AS+DAPHR R+VRQR Sbjct: 6 LCKDTVQVMHSQIALLRQTVLDLRETKAQEIGDLRRQIDALETSGPGNAKARFDDIDSRLRAVEQQPGGSGM--------------------------------------------------------------------------------------------------VGTIGEREDRIESRVAALERKLLADAEGAKAAAAERKRRLLDRLMRQTIVLRNTIIAEG-MAAGTEGRSEGESEAAQEEDCWAGV--REDMVRGGRGSGGVGQ-AADEEELILTARARLAWLESCAENTPS--SGGIAGSGPAGSGDDAETERNDQPATSD---NGDI----DLVVPEEGGTPASGMSDDVGQRRAAGALPAEAWTAPGDEGXXXXXXXXXXXXXXXXXXXXXGDADGEVARLWRWMDEIESRIYRRCSDRGRLPSRGAGDVVTSKAGEVTGADLQNLQDSVELSSLAMGNKLEEGLATLDERMNLLEGNVRSVKARALSRSALDAVSAAXXXXXXXXXXXXXXXXXXXXXXXXXXDSRIEEILAGVLGDEIPTLRRDLGGVTERVAHLEATVAEDGAGGAGLSVEEAAAAAADAASRLANEETQARLAAEMSALEERVDRRAREEARXXXXXXXXAEARGAMRRVSATVSAYTADLATRLDGLKSEHEEQGAVVTRTAEELAAAEAGLRTLGSELVGLGQVANSVSMVVDGKADQTDVEALKHAMQRLDATVTAKARGSSATAARDAEAMGALQVAFRDMSASMEGSIRKLQQAQAAAGSIKVKPLLDRVVKELTEAGMLPDPDAGQGAVGRSMCLSCNRPMTVAGDQSSSRFASQFRGGTLGSRMEKMSSNNPMHINKPSVIWRGGFKMPPHRVPASAHERQRXXXXXXXXXXXXXXXXXETAGAVGDGXXXXXXXXXXXXXXXXXXXXQILPPSDEVLGPGGIDASRDGRLPGIPNMLDSTSAGGRETGGGAGVVGGVVGVGGRNKRVSVGSLAASSDAPHRGRFVRQR 906 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1494.3553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1494.3553.1 >prot_L-elsbetiae_contig1494.3553.1 ID=prot_L-elsbetiae_contig1494.3553.1|Name=mRNA_L-elsbetiae_contig1494.3553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1011bp MSSGDEQDGERAGEQKGPEAASALKEDDVVRNGDGSSAVQMEDTLEEGWPback to top mRNA from alignment at L-elsbetiae_contig1494:16533..25017- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1494.3553.1 ID=mRNA_L-elsbetiae_contig1494.3553.1|Name=mRNA_L-elsbetiae_contig1494.3553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8485bp|location=Sequence derived from alignment at L-elsbetiae_contig1494:16533..25017- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1494:16533..25017- >mRNA_L-elsbetiae_contig1494.3553.1 ID=mRNA_L-elsbetiae_contig1494.3553.1|Name=mRNA_L-elsbetiae_contig1494.3553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6066bp|location=Sequence derived from alignment at L-elsbetiae_contig1494:16533..25017- (Laminarionema elsbetiae ELsaHSoW15)back to top |