mRNA_L-elsbetiae_contig14862.3510.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14862.3510.1
Unique NamemRNA_L-elsbetiae_contig14862.3510.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14862.3510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14862contigL-elsbetiae_contig14862:1024..1886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14862.3510.1prot_L-elsbetiae_contig14862.3510.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14862 1049..1886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.735995-UTR-L-elsbetiae_contig14862:1023..10481622815599.735995-UTR-L-elsbetiae_contig14862:1023..1048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14862 1024..1048 +
1691682983.1641498-UTR-L-elsbetiae_contig14862:1023..10481691682983.1641498-UTR-L-elsbetiae_contig14862:1023..1048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14862 1024..1048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.747604-CDS-L-elsbetiae_contig14862:1048..11081622815599.747604-CDS-L-elsbetiae_contig14862:1048..1108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14862 1049..1108 +
1691682983.1777608-CDS-L-elsbetiae_contig14862:1048..11081691682983.1777608-CDS-L-elsbetiae_contig14862:1048..1108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14862 1049..1108 +
1622815599.7590919-CDS-L-elsbetiae_contig14862:1682..18861622815599.7590919-CDS-L-elsbetiae_contig14862:1682..1886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14862 1683..1886 +
1691682983.1894538-CDS-L-elsbetiae_contig14862:1682..18861691682983.1894538-CDS-L-elsbetiae_contig14862:1682..1886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14862 1683..1886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14862.3510.1

>prot_L-elsbetiae_contig14862.3510.1 ID=prot_L-elsbetiae_contig14862.3510.1|Name=mRNA_L-elsbetiae_contig14862.3510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
MTGMLLQDGHDCAPVAFFNEVLHSVFRTSANQLKVHLPQDVIRLKNTIRG
DDEVEDSENDGEDPMEYAAIDEASVFCKDFGEGLDGGG
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mRNA from alignment at L-elsbetiae_contig14862:1024..1886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14862.3510.1 ID=mRNA_L-elsbetiae_contig14862.3510.1|Name=mRNA_L-elsbetiae_contig14862.3510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=863bp|location=Sequence derived from alignment at L-elsbetiae_contig14862:1024..1886+ (Laminarionema elsbetiae ELsaHSoW15)
CGTCGAGCCGGGGCAGCCGCTCCCAATGACTGGCATGCTGCTGCAGGACG
GCCACGACTGCGCGCCGGTGGCGTTCTTCAACGAGGTGAGGTGCTTTCCC
GAGTACGGTGTTGTTGTCTTTGTTGTCTTTACATAACAACCTTATGGTAT
GTATCTCGAACCCTAACCTCCGTATGTCCGTACTAATCCAACACTTGACG
CGGTCGATTTCTGTTGGCACAGGCTAACGTACATTTCCAGAATTTACCCA
AACATAGAAAGTAGGATTAAACAAAAGGTACAGTCTAGAGCCCTCCGCTC
GCCTCTACATGCTGTGTGAGGTTCAAACAAAACTAGAAGAGCCAACGTCG
CCAACCGGGAAAGGTACACCTCCTGTTTTATACCGGACACATTGTGCACC
AAGAGAGGGGAAGAACAGAGGAACAAGCCTAGTGGTGGTCCTATCCGGCC
CCTTTGTCCGTTGGTCGGTGCCGCGTTGTGTTGATGGCTTGGCTTTTGCG
CTCGAAGAACACCTCGTACTCGTACTTTTGCCGTGAGGGCAGGTCGTCCT
TGATTTGTAGTCGGCCACAGCGACCGGTTCTTTAGAATACGCACGAGGAT
GACAATCGAACCTCACGTACCGCCCCGCCCCTACTGCCACCCCATAACGT
CACGCGCAGGTGTTGCACTCGGTTTTCAGGACCTCGGCGAACCAACTCAA
AGTTCACCTTCCACAGGACGTGATCCGCCTGAAGAACACCATCCGCGGAG
ACGACGAGGTCGAGGACAGCGAAAACGACGGCGAAGACCCAATGGAGTAC
GCGGCAATTGACGAGGCCTCTGTCTTCTGCAAGGACTTCGGCGAGGGCTT
GGACGGTGGCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14862:1024..1886+

>mRNA_L-elsbetiae_contig14862.3510.1 ID=mRNA_L-elsbetiae_contig14862.3510.1|Name=mRNA_L-elsbetiae_contig14862.3510.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig14862:1024..1886+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTGGCATGCTGCTGCAGGACGGCCACGACTGCGCGCCGGTGGCGTT
CTTCAACGAGATGACTGGCATGCTGCTGCAGGACGGCCACGACTGCGCGC
CGGTGGCGTTCTTCAACGAGGTGTTGCACTCGGTTTTCAGGACCTCGGCG
AACCAACTCAAAGTTCACCTTCCACAGGACGTGATCCGCCTGAAGAACAC
CATCCGCGGAGACGACGAGGTCGAGGACAGCGAAAACGACGGCGAAGACC
CAATGGAGTACGCGGCAATTGACGAGGCCTCTGTCTTCTGCAAGGACTTC
GGCGAGGGCTTGGACGGTGGCGGAGTGTTGCACTCGGTTTTCAGGACCTC
GGCGAACCAACTCAAAGTTCACCTTCCACAGGACGTGATCCGCCTGAAGA
ACACCATCCGCGGAGACGACGAGGTCGAGGACAGCGAAAACGACGGCGAA
GACCCAATGGAGTACGCGGCAATTGACGAGGCCTCTGTCTTCTGCAAGGA
CTTCGGCGAGGGCTTGGACGGTGGCGGA
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