mRNA_L-elsbetiae_contig14837.3496.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14837.3496.1
Unique NamemRNA_L-elsbetiae_contig14837.3496.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14837.3496.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.970e-24
Identity = 48/60 (80.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:  229 ELELSWLEDPGRDVPFEFADLHEAMTLPCSIQLFPRVERRSIVYVDGKEARSYRGRQYTA 408
            ELE +WLEDPG DVPFEFADLH+A +LPC+IQLFPRV+RRSIV+VDGKE+RSYRG++YTA
Sbjct:  222 ELESTWLEDPGEDVPFEFADLHQATSLPCNIQLFPRVDRRSIVFVDGKESRSYRGKKYTA 281
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14837.3496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE6.970e-2480.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14837contigL-elsbetiae_contig14837:3264..4257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size593
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.7202652-CDS-L-elsbetiae_contig14837:3263..35601622815598.7202652-CDS-L-elsbetiae_contig14837:3263..3560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14837 3264..3560 +
1691682982.711511-CDS-L-elsbetiae_contig14837:3263..35601691682982.711511-CDS-L-elsbetiae_contig14837:3263..3560Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14837 3264..3560 +
1622815598.7327836-CDS-L-elsbetiae_contig14837:3962..42561622815598.7327836-CDS-L-elsbetiae_contig14837:3962..4256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14837 3963..4256 +
1691682982.7246065-CDS-L-elsbetiae_contig14837:3962..42561691682982.7246065-CDS-L-elsbetiae_contig14837:3962..4256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14837 3963..4256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14837.3496.1prot_L-elsbetiae_contig14837.3496.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14837 3264..4256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14837.3496.1

>prot_L-elsbetiae_contig14837.3496.1 ID=prot_L-elsbetiae_contig14837.3496.1|Name=mRNA_L-elsbetiae_contig14837.3496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
AAAAAAASVEVSQAMEPLRQQQQQLSVAVSGPMHSTRLAAVEGRLDSVDE
LAHQQRQQWNGPEEGVSLTAARRRRKELELSWLEDPGRDVPFEFADLHEA
MTLPCSIQLFPRVERRSIVYVDGKEARSYRGRQYTAATIDRPGASSGELK
PAPVAMAAAVAIGDGFRLGGGGVSDGDTGEMGRGRGGGSSSSSCGRE
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mRNA from alignment at L-elsbetiae_contig14837:3264..4257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14837.3496.1 ID=mRNA_L-elsbetiae_contig14837.3496.1|Name=mRNA_L-elsbetiae_contig14837.3496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=994bp|location=Sequence derived from alignment at L-elsbetiae_contig14837:3264..4257+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGCCGCCGCCGCCGCTTCTGTCGAGGTATCACAGGCGATGGAACC
TCTGCGGCAGCAGCAGCAGCAGCTTTCTGTTGCTGTCTCGGGTCCGATGC
ATAGCACGAGACTGGCCGCCGTTGAAGGTCGACTAGACTCGGTCGACGAG
CTGGCACATCAACAGCGGCAGCAGTGGAACGGGCCAGAAGAGGGTGTGTC
GTTGACTGCAGCCCGCCGACGGCGCAAGGAGCTGGAGCTGAGTTGGCTTG
AGGACCCGGGTCGGGACGTGCCCTTCGAGTTCGCCGATTTGCACGAGGTA
TGTAGACTAGTACATGAATGCACAACAGCATTAGTACATACTTACGTATG
TATCACACACATACATGCGAGATTGTGGCTGCCGCAAGAGGTTAACTATG
TAATAAAGTTTACATATGCATAGATACACATACGTCCATGGTATGTATAA
GTATCCGAAACGCATAAAGACACGACAGGGGGGATTGCTGTGTCGGATGT
TCAGAGGTCTCTCTCCCGCTGCAGTACAGCAGTAATTGTGGTCGAATTGC
CCTCCACAAAACGGCAGTTGGTGCTGGGCCGGTATCGTTGTCGGTGGTGC
ACGACGCCTATACTCTGCTGTGCTGGGTGTGGTACACATGTATGTAGCAT
GTGGTGGTAACCCGGCCCTCGCACACCCAACGAATATTTCCCACGGCAGG
CGATGACCCTCCCTTGCAGCATCCAGCTCTTCCCGCGCGTGGAACGGAGA
TCTATCGTCTACGTGGACGGCAAGGAGGCGCGTTCGTACCGGGGGAGACA
GTACACGGCCGCCACTATCGACCGTCCGGGCGCCAGCAGTGGCGAGCTGA
AGCCGGCGCCAGTCGCGATGGCAGCGGCCGTAGCGATTGGCGACGGGTTT
CGACTTGGAGGGGGCGGTGTCAGCGACGGTGATACCGGAGAGATGGGGAG
AGGCCGGGGAGGCGGCAGCAGCAGTAGCAGCTGCGGTAGAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14837:3264..4257+

>mRNA_L-elsbetiae_contig14837.3496.1 ID=mRNA_L-elsbetiae_contig14837.3496.1|Name=mRNA_L-elsbetiae_contig14837.3496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig14837:3264..4257+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGCCGCCGCCGCCGCTTCTGTCGAGGTATCACAGGCGATGGAACC
TCTGCGGCAGCAGCAGCAGCAGCTTTCTGTTGCTGTCTCGGGTCCGATGC
ATAGCACGAGACTGGCCGCCGTTGAAGGTCGACTAGACTCGGTCGACGAG
CTGGCACATCAACAGCGGCAGCAGTGGAACGGGCCAGAAGAGGGTGTGTC
GTTGACTGCAGCCCGCCGACGGCGCAAGGAGCTGGAGCTGAGTTGGCTTG
AGGACCCGGGTCGGGACGTGCCCTTCGAGTTCGCCGATTTGCACGAGGCC
GCCGCCGCCGCCGCCGCTTCTGTCGAGGTATCACAGGCGATGGAACCTCT
GCGGCAGCAGCAGCAGCAGCTTTCTGTTGCTGTCTCGGGTCCGATGCATA
GCACGAGACTGGCCGCCGTTGAAGGTCGACTAGACTCGGTCGACGAGCTG
GCACATCAACAGCGGCAGCAGTGGAACGGGCCAGAAGAGGGTGTGTCGTT
GACTGCAGCCCGCCGACGGCGCAAGGAGCTGGAGCTGAGTTGGCTTGAGG
ACCCGGGTCGGGACGTGCCCTTCGAGTTCGCCGATTTGCACGAGGCGATG
ACCCTCCCTTGCAGCATCCAGCTCTTCCCGCGCGTGGAACGGAGATCTAT
CGTCTACGTGGACGGCAAGGAGGCGCGTTCGTACCGGGGGAGACAGTACA
CGGCCGCCACTATCGACCGTCCGGGCGCCAGCAGTGGCGAGCTGAAGCCG
GCGCCAGTCGCGATGGCAGCGGCCGTAGCGATTGGCGACGGGTTTCGACT
TGGAGGGGGCGGTGTCAGCGACGGTGATACCGGAGAGATGGGGAGAGGCC
GGGGAGGCGGCAGCAGCAGTAGCAGCTGCGGTAGAGAGGCGATGACCCTC
CCTTGCAGCATCCAGCTCTTCCCGCGCGTGGAACGGAGATCTATCGTCTA
CGTGGACGGCAAGGAGGCGCGTTCGTACCGGGGGAGACAGTACACGGCCG
CCACTATCGACCGTCCGGGCGCCAGCAGTGGCGAGCTGAAGCCGGCGCCA
GTCGCGATGGCAGCGGCCGTAGCGATTGGCGACGGGTTTCGACTTGGAGG
GGGCGGTGTCAGCGACGGTGATACCGGAGAGATGGGGAGAGGCCGGGGAG
GCGGCAGCAGCAGTAGCAGCTGCGGTAGAGAG
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