mRNA_L-elsbetiae_contig1480.3480.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1480.3480.1
Unique NamemRNA_L-elsbetiae_contig1480.3480.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: D7FHI3_ECTSI (Hydrolase, alpha/beta fold family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI3_ECTSI)

HSP 1 Score: 457 bits (1175), Expect = 1.410e-158
Identity = 237/340 (69.71%), Postives = 263/340 (77.35%), Query Frame = 1
Query:    1 MAGRNSGGRSTTSSYPSVRSASLADEVSIVERCWDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLAEGIDD--HAVDGIILCGGLLQINPALLPPKA-----------SSPAVFPLLKVAGWLMPTMPIPGAHIGGETFDTAFGDPEVGSVARADPLVCEMATPRLGYMLGNFKAMDMVKREAPGKLKVKSMLMIHYKGDQRCLYEDCQRFVDGLAIEDKVCFPLEKDSHQVFQDTPEESRKHIEMVARFITERVG 981
            MAGRNSGGRSTTSS+PSV   S   EV+IVERCW+V P GS PKAGLV+IHGG+WHSGWFGELGDLLSS EYSIRVSAPDL  HGLS DP  P        R + PDFA  A+EVGAA+ARARAALP+GCP+FVLGESMG  C LQHL++E  +D    VDG+ILCG LLQI P LLPPK               AVFPLL+  GWL+P++ +PGA IGGETFDTAFGDP VG  ARADPLV EMA PRLG MLG  KAMD+ KRE P KLKVKS+LM+HYKGDQR LYEDCQRFVD L +EDKVC PLE DSHQ+FQDTPE+S+KHIE V RFITER G
Sbjct:   44 MAGRNSGGRSTTSSHPSV--VSYGREVNIVERCWEVLPTGSKPKAGLVLIHGGNWHSGWFGELGDLLSSAEYSIRVSAPDLISHGLSDDP-VPGY------RAYCPDFASQAEEVGAAIARARAALPKGCPLFVLGESMGGLCALQHLISEKANDLTDTVDGVILCGALLQIAPGLLPPKVVFKRQKLSERHKIDAVFPLLQAVGWLIPSLGVPGAAIGGETFDTAFGDPAVGPAARADPLVTEMAPPRLGMMLGFLKAMDVTKREGPVKLKVKSVLMMHYKGDQRTLYEDCQRFVDDLPMEDKVCIPLEGDSHQIFQDTPEKSKKHIETVGRFITERAG 374          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: D7FHI2_ECTSI (Alpha/beta fold family hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI2_ECTSI)

HSP 1 Score: 429 bits (1102), Expect = 4.180e-148
Identity = 216/307 (70.36%), Postives = 245/307 (79.80%), Query Frame = 1
Query:   70 ADEVSIVERCWDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLAEGIDDHA---VDGIILCGGLLQINPALLPPKASSPAVFPLLKVAGWLMPTMPIPGAHIGGETFDTAFGDPEVGSVARADPLVCEMATPRLGYMLGNFKAMDMVKREAPGKLKVKSMLMIHYKGDQRCLYEDCQRFVDGLAIEDKVCFPLEKDSHQVFQDTPEESRKHIEMVARFITERVG 981
            A EV+IVERCW+V P GS PKAGLV+IHGG+WHSGWFGELGDLLSS EYSIRVSAPDL  HGLS D    A+P  R    + PDFA  A+EVGAA+ARAR ALP+GCP+FVLGESMG    LQHL++E  +D     VDG+ILCG LLQ+ PA+LPPKA+    FPLLK  GWLMPT+ +PGA +GGETFDTAFGDP VG VARADPLV EMA  R GYMLG  K MD+V+RE P KLKVKS+LM+HYKGDQR LYEDCQRFVD L +EDKVC PLE DSHQ+FQDTPE+S+K+IE V RFITER G
Sbjct:   38 ATEVNIVERCWEVLPTGSKPKAGLVLIHGGNWHSGWFGELGDLLSSAEYSIRVSAPDLISHGLSDD----AIPGYRA---YCPDFASQAEEVGAAIARARTALPKGCPLFVLGESMGGLSALQHLISERANDGTTDNVDGVILCGALLQVAPAVLPPKAA----FPLLKAVGWLMPTLGVPGAAVGGETFDTAFGDPAVGPVARADPLVTEMAPLRFGYMLGFLKGMDVVQREGPAKLKVKSVLMMHYKGDQRTLYEDCQRFVDDLPMEDKVCIPLEGDSHQIFQDTPEKSKKYIETVGRFITERAG 333          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: A0A6T6K467_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6K467_9RHOD)

HSP 1 Score: 156 bits (395), Expect = 1.880e-41
Identity = 102/287 (35.54%), Postives = 153/287 (53.31%), Query Frame = 1
Query:  115 PGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLAEGIDDHAVDGIILCGGLLQINPALLPPKASSPAVFPLLKVAGWLMPTMPIPGAHIGGETFDTAFGDPEVGSVARADPLVCEMATPRLGYMLGNFKAMDMVKREAPGKLKVKSMLMIHYKGDQRCLYEDCQRFVDGLAIE-DKVCFPLEKDSHQVFQDTPEESRKHIEMVARFITE 972
            P   P +GL+I+HG  WHS WF EL   LS  E    V A DLP HGLS +       +D + R ++    D  DE+ AALAR R+ALP   P+F+LGES G   VL   L     +    G++LCG LL  N  +LPPK     VF ++ +   + PT  +PG  + G+T+  AFGDP +  +++ DPLV      RL + +  F+ +D ++  A G +K++++L++H + D R    + +  +  + +   K    +    HQVFQD PE   ++I  V  F+ E
Sbjct:   65 PARTPASGLLIVHGYLWHSAWFWELARDLSQ-EALAEVHAIDLPSHGLSDN-------IDGL-RAYAKSLEDFLDELEAALARLRSALPADAPIFILGESFGGLLVLLLHLDPRFSE-LFQGVVLCGPLLHPNKEILPPKI----VFTIMGLLRNVFPTAVLPGQDLSGKTWAEAFGDPLMVELSQNDPLVGYGEPMRLAFAVSLFEGIDRLE-VALGSMKLRNLLILHNEEDTRSSISNSELIMKEVQVSGSKKLVRISGRGHQVFQDAPERRVENIREVVSFVKE 336          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: A0A7S1Y5G5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y5G5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.460e-24
Identity = 93/292 (31.85%), Postives = 131/292 (44.86%), Query Frame = 1
Query:   85 IVERCWDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSG-DPSTPALPLDRVGRFHSPDFADNADEVGAALA-----RARAALPEGCPVFVLGESMGAPCVLQHLL--AEGIDDHAVDGIILCGGLLQINPALLPPKASSPAVFPLLKVAGWLMPTMPIPGAHIGGETFDTAFGDPEVGSVARADPLVCEMATPRLGYM---LGNFKAMDMVKREAPGKLKVKSMLMIHYKGDQRCLYEDCQRFVDGLAIEDKVCFPLEKDSHQVFQDTPE 927
            +V R W   PP   PKA  + +HGG WHSG+F  L   L+     I  +A D  G G S  +P+TP          H  DF    ++V  A+             +  PV++ GES G P VL+     A+  D   + G+I+ GGL++INPA++PP    P V  ++       P + +P       TFD AFGD E    ARADP +       L  +   L + +A+    ++ P  L     L +H + D R L E  Q F D           +E   HQ+ QDTPE
Sbjct:   33 LVTRVW---PPKKKPKALCLFVHGGGWHSGYFEALASHLNKTS-DIFCAAYDQAGCGYSEVEPTTPD-----PNYMHFDDFDCLVEDVYEAMEWMVKEAGTTNDDDYVPVYIFGESFGGPQVLEAAFQQADRKDGVRIAGVIVFGGLIRINPAMVPP----PFVCNIVAFLAKYYPKIKMPSTDFES-TFDEAFGDKEWAKTARADPKITTNPKGTLAAISATLSSGRALLEKAQDFPVPL-----LCVHGREDCRTLLEGIQEFCDKAGPSKATLHVVETTGHQLLQDTPE 305          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: A0A7R9VF98_9CHLO (Hypothetical protein n=2 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VF98_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 3.920e-23
Identity = 97/302 (32.12%), Postives = 133/302 (44.04%), Query Frame = 1
Query:   94 RCWDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLA----------EGIDDHA------VDGIILCGGLLQINPALLPPKASSPAVFPLLKVAGWLMPTMPIPGAHIGGETFDTAFGDPEVGSVARADPLVCEMATPRLGYMLGNFKAMDMVKREAPGKLKVKSM--LMIHYKGDQRCLYEDCQRFVDGLAIEDKVCFPLEKDSHQVFQDTPEESRKHI 945
            R W+   P    KA LV+ HG  WHSG+F + G  L++  Y   V A D   HG S  P+    PL  V +F      D+  E  A +         G  +FV GES G   V+   L            G D         VDG+ILC  +++++P  +PP   +P V  ++K+   L P   +P      + F TAFGD    + AR DPLV     P L        AM  ++R  PG L    +  L +H K D RC  E  Q      A  DK     E+ SHQ+ QD+PE +++ I
Sbjct:   34 RRWN---PAGTCKAVLVVQHGRGWHSGYFQQFGSSLAAAGY--EVVAFDSACHGHSSGPA--GAPLGFVDKF------DHLCEDLAEVVEHEREKHPGIKLFVYGESAGGAVVILQALKWQEAAGKQYPSGSDAATKYKKPWVDGLILCSSMIKVDPKTIPP---APIVC-VVKLMARLFPRSRLPPEK--EDDFGTAFGDKRWEAAARDDPLVPSDKPPTLAMAAAFLNAMSRLQR--PGALARLELPFLALHAKPDVRCAVEGSQMLHKQAASTDKELRLYEQGSHQLLQDSPENTQRAI 314          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: A0A0G4EPD0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EPD0_VITBC)

HSP 1 Score: 84.7 bits (208), Expect = 5.060e-15
Identity = 94/325 (28.92%), Postives = 137/325 (42.15%), Query Frame = 1
Query:   79 VSIVERCWDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLAE-----------------GIDDHAVD-----GIILCGGLLQINPALLPPKASSPAVFPLLKVAGWLMPTMPIPGAHIGGETFDTAFGDPEVGSVARADPLVCEMATPRLGYMLGNFKAMDMVKREAPGKLKVKSMLMIHYKGDQRCLYEDCQRFVDG--LAIEDKVCFPLEKDSHQVFQDTPEESRKHIEMVARFITERVG 981
            V +  R W  +P G   +A + +IHG S+HSG+FGEL   L+S    + V A DL GHG SG             R H   F    D+V   + R R A   G PVFV GESMGA   +   + E                 G+  +        G+IL G  +++   + PPK     V  LL++   L+P +P+    +   ++D AF  P++  +             RLG M+    A+     +    LKV   L +H   D+R   E+     D   L  E K     E  SHQ+ QD PE   + I  +  ++  R+G
Sbjct:   29 VRLFTRRW--RPQGKV-RAQMYLIHGVSFHSGYFGELAAALASD--GVDVMAMDLQGHGRSGGT-----------RVHIGRFQHYVDDVRRMIERRRVA---GVPVFVFGESMGASIAVVLAIQEEMRVARAERQLFYDFFWGLTCYPYQRLPLAGLILSGTAIRVAKGVFPPKL----VRYLLRMLALLLPMLPVVPLDV--PSYDEAFRVPQMRKL-------------RLG-MVPALTAVPQYIEKNLHLLKV-PFLALHGTADERTPPENAHLLYDSSPLPPEMKRVVLYEGASHQLLQDLPETREQVISDIREWVRGRLG 313          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: A0A8H7IYP0_9PLEO (Hydrolase_4 domain-containing protein n=1 Tax=Ascochyta lentis TaxID=205686 RepID=A0A8H7IYP0_9PLEO)

HSP 1 Score: 57.4 bits (137), Expect = 9.000e-6
Identity = 78/306 (25.49%), Postives = 119/306 (38.89%), Query Frame = 1
Query:   88 VERCWDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSI---------RVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLAEGIDDHAVDGIILCGGLLQINPALLPPKASSPAVFPLLKVAGWLMPTMPIPGAHIGGETFDTAFGDPEVGSVARADPLVCEMATPRLGYMLGNFKAMDMVKREAPG-KLKVKSMLMIHYKGDQRCLYEDCQRFVDGLAIEDKVCFPLEKDSHQVFQDTP---EESRKHIEMVARFI 966
            V   W  +P  +  +A +VI HG       F E  +      +S           V APD+ GHG S  P T  +             A     V   +   + A  EG P+ + G S+G    L    +   D   + G+++ G  L   P L+P  A +        V G L  +MP     + G + D    D E       DPLV +   P     L    A+D +++   G K  +   L+IH   D    ++  ++FV+G+A EDK     E   H+V  D P   E  R+ +E + + I
Sbjct:   21 VSHIW--RPRTTTARATIVIQHG-------FCEYAERYVDSHHSFVRELNAAGYAVYAPDMWGHGRS--PGTRGV-------------AHMGKAVQDHVELRKLASKEGAPIVLFGHSLGG---LVTAGSATTDPENIKGVVMTGPAL---PDLIPNVARA--------VVGALARSMPTVSVPMHGASLDGLTRDQEEIKRFTTDPLVPQRQVP----FLIAATALDTMQQINDGLKNWIVPTLVIHGTADTYTEWKGSEKFVNGIASEDKTFRKYEDGRHEVLHDPPCAEEALREILEWIEKHI 284          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: A0A3D6A027_9PROT (Alpha/beta hydrolase n=1 Tax=Oceanicaulis sp. TaxID=1924941 RepID=A0A3D6A027_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-5
Identity = 48/130 (36.92%), Postives = 62/130 (47.69%), Query Frame = 1
Query:  100 WDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLAEGIDDHAVDGIIL 489
            W    P  AP  GL+++HGG+ H GW+  +G  L++  Y  RV APDL G G SG   T ++              D+A +V AA A A  A   G PV   G S G    L   +A G  +H   GIIL
Sbjct:   47 WKAWGPRGAP--GLILVHGGTAHKGWWDAIGPFLAAEGY--RVVAPDLAGMGDSGWRETYSMN-------------DHASDVLAA-AEAGGAFETGKPVLA-GHSFGGFVTLSAAIAIG--EHFAAGIIL 155          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: UPI001BDCC415 (alpha/beta hydrolase n=1 Tax=Pseudonocardia sp. H11425 TaxID=2835865 RepID=UPI001BDCC415)

HSP 1 Score: 56.6 bits (135), Expect = 1.740e-5
Identity = 53/141 (37.59%), Postives = 62/141 (43.97%), Query Frame = 1
Query:   94 RCWDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLAEGIDDHAVDGIILCGGLLQINP 516
            RCW     G A   GLV++HGG+ HSGW+  +    +S   S RV A DL GHG SG             R    D    ADEV AA A    A P      V+G SMG   V  H+  E  D   VDGI +    L   P
Sbjct:   41 RCW-----GDADLPGLVLVHGGAAHSGWWDHIAPFFAS---SHRVVALDLSGHGDSG-------------RRPDYDMRIWADEVLAAAAAGGIAGPP----IVVGHSMGG-WVAAHVGVEHGD--RVDGIAIIDSPLFDQP 153          
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Match: UPI001CA72C38 (alpha/beta hydrolase n=1 Tax=Nocardia coffeae TaxID=2873381 RepID=UPI001CA72C38)

HSP 1 Score: 55.1 bits (131), Expect = 6.020e-5
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 1
Query:   73 DEVSIVERCWDVQPPGSAPKAGLVIIHGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRVGRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMG 420
            D V+I  RCW     G A   G+V++HGGS HSGW+  +  LL++     RV A DL GHG S   S          R+    +AD        +A A AA  +G P +++G SMG
Sbjct:   31 DGVAIHLRCW-----GRAGTPGVVLVHGGSAHSGWWDHIAPLLATTR---RVVALDLSGHGDSATRS----------RYPMEGWADE------VMAAAEAAGIDGQP-YIVGHSMG 121          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1480.3480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FHI3_ECTSI1.410e-15869.71Hydrolase, alpha/beta fold family n=1 Tax=Ectocarp... [more]
D7FHI2_ECTSI4.180e-14870.36Alpha/beta fold family hydrolase n=1 Tax=Ectocarpu... [more]
A0A6T6K467_9RHOD1.880e-4135.54Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1Y5G5_9STRA1.460e-2431.85Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7R9VF98_9CHLO3.920e-2332.12Hypothetical protein n=2 Tax=Chlamydomonas euryale... [more]
A0A0G4EPD0_VITBC5.060e-1528.92Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A8H7IYP0_9PLEO9.000e-625.49Hydrolase_4 domain-containing protein n=1 Tax=Asco... [more]
A0A3D6A027_9PROT1.060e-536.92Alpha/beta hydrolase n=1 Tax=Oceanicaulis sp. TaxI... [more]
UPI001BDCC4151.740e-537.59alpha/beta hydrolase n=1 Tax=Pseudonocardia sp. H1... [more]
UPI001CA72C386.020e-537.07alpha/beta hydrolase n=1 Tax=Nocardia coffeae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1480contigL-elsbetiae_contig1480:8991..13166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.1
Seed ortholog evalue4.4e-127
Seed eggNOG ortholog2880.D7FHI3
KEGG rclassRC00020,RC00041
KEGG koko:K01054
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko04714,ko04723,ko04923,map00561,map01100,map04714,map04723,map04923
KEGG ModuleM00098
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005811,GO:0005886,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0008150,GO:0008152,GO:0009056,GO:0009966,GO:0009987,GO:0010646,GO:0012505,GO:0016020,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0017171,GO:0019433,GO:0019867,GO:0023051,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046461,GO:0046464,GO:0046486,GO:0046503,GO:0047372,GO:0048583,GO:0050789,GO:0050794,GO:0052689,GO:0065007,GO:0071704,GO:0071944,GO:0098588,GO:0098805,GO:1901575
EggNOG free text desc.acylglycerol lipase activity
EggNOG OGsCOG2267@1,KOG1455@2759
Ec32 ortholog descriptionHydrolase, alpha/beta fold family
Ec32 orthologEc-25_002260.1
EC3.1.1.23
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Exons6
Model size984
Cds size984
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1480.3480.1prot_L-elsbetiae_contig1480.3480.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1480 8991..13166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.2804587-CDS-L-elsbetiae_contig1480:8990..91011622815597.2804587-CDS-L-elsbetiae_contig1480:8990..9101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 8991..9101 -
1691682981.7806406-CDS-L-elsbetiae_contig1480:8990..91011691682981.7806406-CDS-L-elsbetiae_contig1480:8990..9101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 8991..9101 -
1622815597.2943628-CDS-L-elsbetiae_contig1480:9606..97021622815597.2943628-CDS-L-elsbetiae_contig1480:9606..9702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 9607..9702 -
1691682981.7969317-CDS-L-elsbetiae_contig1480:9606..97021691682981.7969317-CDS-L-elsbetiae_contig1480:9606..9702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 9607..9702 -
1622815597.3062608-CDS-L-elsbetiae_contig1480:10660..107821622815597.3062608-CDS-L-elsbetiae_contig1480:10660..10782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 10661..10782 -
1691682981.8055785-CDS-L-elsbetiae_contig1480:10660..107821691682981.8055785-CDS-L-elsbetiae_contig1480:10660..10782Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 10661..10782 -
1622815597.3174431-CDS-L-elsbetiae_contig1480:11093..112021622815597.3174431-CDS-L-elsbetiae_contig1480:11093..11202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 11094..11202 -
1691682981.8135502-CDS-L-elsbetiae_contig1480:11093..112021691682981.8135502-CDS-L-elsbetiae_contig1480:11093..11202Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 11094..11202 -
1622815597.3275273-CDS-L-elsbetiae_contig1480:12184..124601622815597.3275273-CDS-L-elsbetiae_contig1480:12184..12460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 12185..12460 -
1691682981.8221438-CDS-L-elsbetiae_contig1480:12184..124601691682981.8221438-CDS-L-elsbetiae_contig1480:12184..12460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 12185..12460 -
1622815597.337926-CDS-L-elsbetiae_contig1480:12896..131661622815597.337926-CDS-L-elsbetiae_contig1480:12896..13166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 12897..13166 -
1691682981.8317504-CDS-L-elsbetiae_contig1480:12896..131661691682981.8317504-CDS-L-elsbetiae_contig1480:12896..13166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1480 12897..13166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1480.3480.1

>prot_L-elsbetiae_contig1480.3480.1 ID=prot_L-elsbetiae_contig1480.3480.1|Name=mRNA_L-elsbetiae_contig1480.3480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=328bp
MAGRNSGGRSTTSSYPSVRSASLADEVSIVERCWDVQPPGSAPKAGLVII
HGGSWHSGWFGELGDLLSSPEYSIRVSAPDLPGHGLSGDPSTPALPLDRV
GRFHSPDFADNADEVGAALARARAALPEGCPVFVLGESMGAPCVLQHLLA
EGIDDHAVDGIILCGGLLQINPALLPPKASSPAVFPLLKVAGWLMPTMPI
PGAHIGGETFDTAFGDPEVGSVARADPLVCEMATPRLGYMLGNFKAMDMV
KREAPGKLKVKSMLMIHYKGDQRCLYEDCQRFVDGLAIEDKVCFPLEKDS
HQVFQDTPEESRKHIEMVARFITERVG*
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mRNA from alignment at L-elsbetiae_contig1480:8991..13166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1480.3480.1 ID=mRNA_L-elsbetiae_contig1480.3480.1|Name=mRNA_L-elsbetiae_contig1480.3480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4176bp|location=Sequence derived from alignment at L-elsbetiae_contig1480:8991..13166- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGCAGGAACTCCGGTGGACGGTCGACTACATCCTCATACCCTTC CGTGCGGTCCGCGAGCCTTGCCGACGAGGTCAGCATCGTTGAGAGGTGCT GGGATGTCCAACCCCCCGGCTCCGCCCCCAAAGCCGGCCTCGTGATCATC CACGGGGGCAGTTGGCACAGCGGCTGGTTTGGCGAACTGGGCGACCTGCT GTCCTCTCCCGAGTACTCCATCCGCGTGTCGGCCCCGGATCTGCCGGGCC ACGGGCTCTCTGGAGATCCCGTTCCCGGCTACAGGCAAGCAGAGAACTCA AACAAACCCAGTCTGACATCAACCAATGCACCTCATTTTTTTTTTTTTAT CGAAAGGCTACGGTCGGAAATAACCTGGATGTGTGGTGACCACGCCTGGC TGTGTTTGTCTAGCCGCCCGCCGTCCAAGCGTGTTTCCCTGTTTCAGCTA CATATATAGGACCCGGGCGTCTATGCTCTCATCGCGTTTCCAGCCGCCCC CCTCCCCCGGGAGAGACGCAGTCTGGCCGCTAATTTTCGAGGGCTCTTTT TCCGCTTCCGCGGGACCTCGTGGAACGGAACTATGCAGTGGCATGGACGA CCGAAACGAACTGAGCTGCACACGTTTTTTTCACGGCCGACCGATTTGGC TGACGCCCCTTAGCTAGTTAGGGCTCCGCCAAACCCTGACATACAGCTGT AGCAAGAGCACCCCCGCACTCCCCCTCGACCGTGTCGGCAGGTTCCACTC TCCCGACTTCGCGGACAACGCCGACGAGGTCGGAGCAGCGCTCGCGCGCG CGCGCGCGGCGCTCCCGGAAGGATGCCCCGTCTTCGTCCTCGGGGAGTCC ATGGGCGCCCCCTGTGTTCTTCAGCATCTGCTTGCGGAGGGCATCGACGA CCACGCCGTGGACGGGATCATTCTCTGCGGGGGGCTGCTTCAGATCAACC CCGCGCTGCTGCCCCCAAAGGCCAGTTCACCAGTTCAACATCCCAGAGTA GTTTCATGCTCATGGTTTTGCCCACACTTGACTCTCGTCGCTTCCCTACC TATCGTAGGTAACACAAGATAACACACCCCCTGGACCCGTTTTCAAAGCT CGAGTACTCCGCAGCGAGAAGAAGGGTGCCAGACCCGAAAAGGGCGGCGT TGGAAATATCTCATCAAGGGCTGTCCGAAAAATGTGTCGTTTGGTGTTAG AATCGTACTCGTCGTTGCGGAGTAACCGAGCTTTGAAAATCTGTCCAGGG GGTGTGTTACCTTATGTTGTATGCGGTACCCACCCGCTGCTATTCGGCCT GCTTGGCTCTTTCTTCCACCCTATGTACATTGTATCAAATTCTTAGACCT GCCCCTTGCCGAGCCCCTCCCAATAGACTCGTTTGTCGCTGTCCCACAAA GTTCCTTCAAGCGCTGGATGATGTACGATCCGAGGCTCAAGCGCTTCCAT TCGCGAGGCTTGATTTTCTCGACAGGCCTATACACCTTGTAGTACGGAGT ATCTGGTTTCCCTCAAAGGGATCCGGAGGCAAACGCACGGTATGTATGAC CGGCAGCGCTCATGCGCGCAAACCCTATTACGAGGCATACAGCATTACCA CCACCCCCCCCTCACGACCAGCTTCCAGTCTGCCGAAATGGATGAACAGC AGTGAATTATAGAAACTATGTCTTGATGAGCCTGCTAGGTAGCACTAACA GGGGAGCTATCACTGTACCTGTGCCCAGGTGTGCCAAGGATACACACGGC ACGCTGGTAGAAAGAAAAAACATAAAAGTATACCGCTGTGGTTACTACGC AGCGCCCAAAAATGGTGCGCTGCTTCTAAATTCGCTCGGACCCTCTTCAG AGCGCTGGTAAAACGTGTGGGTATGTATCCGTAAGAAGAAAAACATAAAA CGGCACAACAGTAGTCTAAATGAAACTCTCCGCACCCCTGTCTCGCTTTT TTCCCAAACACAAGGCTGTCTTTCCTCTGCTGAAAGTTGCGGGTTGGCTT ATGCCGACGATGCCGATACCGGGTGCCCACATCGGAGGAGAGACATTCGA CACCGCGTTTGGCGACCCCGAAGGTAAATTGCTTGACACTTCATAGGTCT GTTCCAGGGTTATCCTTGTCTGTGTAAGGTCCTTGTCGGGCCTAGCAGCT CGACTGCGTGCTCGCACGCGCGCGCGCGCGCCGCCGGCAGCACAAAAAAA CAAAATCTACCCAATTTTACGGGAGCAACGTATTGAGCACACCCTCCCCC GCCCAATCTCCCCACACCGCGCCTCTCCTTGCGCTCTGCGGGTGCGAGAG AGGATCCCGGATTCAGTGTACCTAATACCCCTCTCTCTCTCTCTCTCTCT CTCTTGCTGGCTGTTGACCTCACGCGAAACCAAGTCGGGTCGGTCGCCCG CGCAGACCCGTTGGTGTGCGAGATGGCCACGCCGCGGCTCGGGTATATGC TGGGCAATTTTAAGGCGATGGACATGGTGAAGCGAGAGGCGCCGGGGAAG CTCAAGGTAGGAAGGGGCGGCGGTCGTGTCCGGGGTGCCCGTGCGCTGCA CAGGGTGTGCAGTAGGCATTAAGGGGGCGAAAAACGCAATGATCGCGCCC GAGGGTAGAGCCGCTTTCCTCCCGCACGGCTCGTGGACGGCGGTGGTGGC AGGGATAATTTCTGGAAGCTTTCGCAAACGTCCTTTCAAGAGCTATTTTA CCCTGGTCAATATTTGCACCCTCCCCGTTGTCGATGTGGTTCTGTTGCGG GGGTGGGGGGGGTATCAGCACCCCGCTGCGTTTTGCTTTTGAGCGATGCG ACTTTGCCAAAGCTCCTTTGGGAGCCGGTGGATACGGAGGGGGCTGATTT TTGCTTTCTTGTGGTTGGCCTGTTTTGGCGTGTCGGTTTTGGGCGCGAAT TTAGCGGTGACACGTGAGATGTCTTATGTACCCGCTTTTTATTGCCGATG CATTGCGTCTTCTAACACTCGTCGACGGGTGGCGGAGTTTGAGGGGTGCT GCTGATTCTGATTCTCAAGACCACGATGCACGAGGCATCGCAGTCTTTAC CCGAGGTACTGCCGCGGCCTCCTGCAGAGGCCATACTCTTTGCACCGACG ATATTTAGAGCCTTCAAGCGACCATAGTTTAAGTCGCTACGCGGCAGGTA CTTGTTGCGTGACGAGTCAGCTGCACCCCGCTGTTAACATCGCTGCTGCT CCTCAGATTTCTTCTTCTGGCTCGGGCGTATCTCCAGCCATGCGTTTGCA GCCGTGTGGCGCGCCACTGCATGATTAGTAGTACTACCTGGAATGTACAA ATGTCTGTACAAATGTCAGCGGCCTGCATTTATACGCCCGAAAGTGAAAA AGTCGTACCAGGGGGGGCGTTTTTCTCTCTCTTATATGGACGAGCCCAAA TACTCTACATAGGCATTTCGCTCCTACCGTCGTGTGTGTGCGTGTGCGTG TGTGTGGTCCCCAGGTGAAAAGTATGTTGATGATTCACTACAAGGGTGAC CAGCGGTGCCTGTATGAGGACTGCCAGCGGTTCGTGGACGGGTTGGCTAT CGAAGACAAGGTGAATAAAAAGCAGCTGATACAAAGTTTCATGCTCTGAA GAGCAACACTTAGTCATGCTACATATCTGGTGAGAAGGCCGAATTGCTGT AGGGGGGAGCCCCGGTTTAAGAGATGAGTATCTAGACTACATAGAAACTG TACGAGGGAAAAAATAGTGGCACATTTATTTGCCAGATTTCGGGCTCAGA CAGTCGCTCTTTGTCCCATTCCTTCTGAAGGTGTTATTCAACCAGTGAGT GGAACTCTTGCGATGAGAGGGAACAGCGGTCGACAGAGAGAGTTTTTCAG TGTACGAATATGCTCGTCCTCTTGGTGGTTGTCGCTTTTCCTCTTCCGAG ATGCGGGTAGATTGTTCACTACAATGCATCGCCAACGAGCAGCTACAGCT CTGCGGTTCTTGCGATCTCGATGATAGAAGTAAGTTTGCGCTTTTGCCCC GACATCGTGTTTTAAATTACCTTTTCTACAAATAAATGCCGTTCTTCTGA CGAATTGGTTCGTAGGTGTGCTTCCCGCTTGAGAAAGACAGCCACCAGGT CTTCCAAGACACCCCGGAGGAGAGCAGGAAGCACATTGAGATGGTGGCCC GTTTCATTACCGAGCGTGTCGGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1480:8991..13166-

>mRNA_L-elsbetiae_contig1480.3480.1 ID=mRNA_L-elsbetiae_contig1480.3480.1|Name=mRNA_L-elsbetiae_contig1480.3480.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1968bp|location=Sequence derived from alignment at L-elsbetiae_contig1480:8991..13166- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGCAGGAACTCCGGTGGACGGTCGACTACATCCTCATACCCTTC
CGTGCGGTCCGCGAGCCTTGCCGACGAGGTCAGCATCGTTGAGAGGTGCT
GGGATGTCCAACCCCCCGGCTCCGCCCCCAAAGCCGGCCTCGTGATCATC
CACGGGGGCAGTTGGCACAGCGGCTGGTTTGGCGAACTGGGCGACCTGCT
GTCCTCTCCCGAGTACTCCATCCGCGTGTCGGCCCCGGATCTGCCGGGCC
ACGGGCTCTCTGGAGATCCCATGGCGGGCAGGAACTCCGGTGGACGGTCG
ACTACATCCTCATACCCTTCCGTGCGGTCCGCGAGCCTTGCCGACGAGGT
CAGCATCGTTGAGAGGTGCTGGGATGTCCAACCCCCCGGCTCCGCCCCCA
AAGCCGGCCTCGTGATCATCCACGGGGGCAGTTGGCACAGCGGCTGGTTT
GGCGAACTGGGCGACCTGCTGTCCTCTCCCGAGTACTCCATCCGCGTGTC
GGCCCCGGATCTGCCGGGCCACGGGCTCTCTGGAGATCCCAGCACCCCCG
CACTCCCCCTCGACCGTGTCGGCAGGTTCCACTCTCCCGACTTCGCGGAC
AACGCCGACGAGGTCGGAGCAGCGCTCGCGCGCGCGCGCGCGGCGCTCCC
GGAAGGATGCCCCGTCTTCGTCCTCGGGGAGTCCATGGGCGCCCCCTGTG
TTCTTCAGCATCTGCTTGCGGAGGGCATCGACGACCACGCCGTGGACGGG
ATCATTCTCTGCGGGGGGCTGCTTCAGATCAACCCCGCGCTGCTGCCCCC
AAAGGCCAGTTCACCAAGCACCCCCGCACTCCCCCTCGACCGTGTCGGCA
GGTTCCACTCTCCCGACTTCGCGGACAACGCCGACGAGGTCGGAGCAGCG
CTCGCGCGCGCGCGCGCGGCGCTCCCGGAAGGATGCCCCGTCTTCGTCCT
CGGGGAGTCCATGGGCGCCCCCTGTGTTCTTCAGCATCTGCTTGCGGAGG
GCATCGACGACCACGCCGTGGACGGGATCATTCTCTGCGGGGGGCTGCTT
CAGATCAACCCCGCGCTGCTGCCCCCAAAGGCCAGTTCACCAGCTGTCTT
TCCTCTGCTGAAAGTTGCGGGTTGGCTTATGCCGACGATGCCGATACCGG
GTGCCCACATCGGAGGAGAGACATTCGACACCGCGTTTGGCGACCCCGAA
GGCTGTCTTTCCTCTGCTGAAAGTTGCGGGTTGGCTTATGCCGACGATGC
CGATACCGGGTGCCCACATCGGAGGAGAGACATTCGACACCGCGTTTGGC
GACCCCGAAGTCGGGTCGGTCGCCCGCGCAGACCCGTTGGTGTGCGAGAT
GGCCACGCCGCGGCTCGGGTATATGCTGGGCAATTTTAAGGCGATGGACA
TGGTGAAGCGAGAGGCGCCGGGGAAGCTCAAGTCGGGTCGGTCGCCCGCG
CAGACCCGTTGGTGTGCGAGATGGCCACGCCGCGGCTCGGGTATATGCTG
GGCAATTTTAAGGCGATGGACATGGTGAAGCGAGAGGCGCCGGGGAAGCT
CAAGGTGAAAAGTATGTTGATGATTCACTACAAGGGTGACCAGCGGTGCC
TGTATGAGGACTGCCAGCGGTTCGTGGACGGGTTGGCTATCGAAGACAAG
GTGAAAAGTATGTTGATGATTCACTACAAGGGTGACCAGCGGTGCCTGTA
TGAGGACTGCCAGCGGTTCGTGGACGGGTTGGCTATCGAAGACAAGGTGT
GCTTCCCGCTTGAGAAAGACAGCCACCAGGTCTTCCAAGACACCCCGGAG
GAGAGCAGGAAGCACATTGAGATGGTGGCCCGTTTCATTACCGAGCGTGT
CGGCTAAGTGTGCTTCCCGCTTGAGAAAGACAGCCACCAGGTCTTCCAAG
ACACCCCGGAGGAGAGCAGGAAGCACATTGAGATGGTGGCCCGTTTCATT
ACCGAGCGTGTCGGCTAA
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