mRNA_L-elsbetiae_contig14736.3445.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14736.3445.1
Unique NamemRNA_L-elsbetiae_contig14736.3445.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: D8LDP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP5_ECTSI)

HSP 1 Score: 616 bits (1588), Expect = 4.700e-213
Identity = 329/432 (76.16%), Postives = 355/432 (82.18%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLEFLPERDASLSDETDGPPGAGDGA--AKGWTGAGGKKPMVEDLEAARESHAAQTRADGVLATAETGEGAAAAVSEVEVDAKGPAATAEINGRQAGVGTPPQVVRVGGAGXXXXXXXXXXXXXXRASSPGGVERGGKPAKMVPFAIMRGPEVEQERWEILFRQGPMDYSQLKLVSFRGDAGGVAIRCPPGKEKYWLRGDREEWLDHLLSLLLPLVEYVETKQSLQMKSSTRAPPQFVA 1290
            QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDI+PVLRC+VDMGFGAEL G VPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSY EMPV+VRRLFKHTHLNTACR+LG+ SLSLEFLPERDASL +      G GD      GWTGAG +KPMVEDLEAARESHAAQ RA GV      G+                   A +NGR +G GTP QVV V  A XXXXX          A +PGGV + G+P K+VPFA+MRGPEVEQERWEILFRQGP++YSQL+ +SFRGD GGVA+R   G+E+ WL+GDREEWLDHLLS+LLPLVEYVETKQSLQMKS+   PP+FVA
Sbjct:  399 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIQPVLRCEVDMGFGAELKGSVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYSEMPVAVRRLFKHTHLNTACRLLGISSLSLEFLPERDASLGEADAAGEGGGDAVNGGVGWTGAGARKPMVEDLEAARESHAAQDRAAGV-----GGDSXXXXXXXXXXXXXXXXXVATVNGRPSGGGTPKQVVAVDAAXXXXXXP---------APAPGGV-KSGEPVKLVPFAVMRGPEVEQERWEILFRQGPLEYSQLQRISFRGDVGGVALRGVAGEEEAWLKGDREEWLDHLLSVLLPLVEYVETKQSLQMKSTRAPPPKFVA 815
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BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: A0A6H5JUP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP0_9PHAE)

HSP 1 Score: 577 bits (1487), Expect = 2.250e-193
Identity = 321/432 (74.31%), Postives = 341/432 (78.94%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLEFLPERDASLSDETDGPPGAGDGA--AKGWTGAGGKKPMVEDLEAARESHAAQTRADGVLATAETGEGAAAAVSEVEVDAKGPAATAEINGRQAGVGTPPQVVRVGGAGXXXXXXXXXXXXXXRASSPGGVERGGKPAKMVPFAIMRGPEVEQERWEILFRQGPMDYSQLKLVSFRGDAGGVAIRCPPGKEKYWLRGDREEWLDHLLSLLLPLVEYVETKQSLQMKSSTRAPPQFVA 1290
            QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDI+PVLRC+VDMGFG EL G VPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSY EMPV+VRRLFKHTHLNTACR+LG+ SLSLEFLPERDASL +      G GD      GWTGAG KKPMVEDLEAARESHAAQ R                  S                                   XXXXXXXXXXXXXX    PGGV + G P K+VPFA+MRGPEVEQERWEILFRQGP++YSQL+ +SFRGD GGVA+R   G+E+ WL+GDREEWLDHLLS+LLPLVEYVETKQSLQMKS+   PP+FVA
Sbjct:  759 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIQPVLRCEVDMGFGDELKGSVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYSEMPVAVRRLFKHTHLNTACRLLGISSLSLEFLPERDASLGEADAAGEGGGDAVNGGAGWTGAGAKKPMVEDLEAARESHAAQDRE----------------ASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGV-KSGDPVKLVPFAVMRGPEVEQERWEILFRQGPLEYSQLQRMSFRGDVGGVALRGVAGEEEAWLKGDREEWLDHLLSVLLPLVEYVETKQSLQMKSTRAPPPKFVA 1173
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BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: A0A835YLF5_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLF5_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.070e-70
Identity = 121/196 (61.73%), Postives = 151/196 (77.04%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLE 588
            QDSHMFGLSQLYQMRGRVGRSD AAYTYLLY P  +L+ +AKRRLKA+RELS LGSG+ELANRDLEIRGAG++FGTDQSGD+  +GYELYMNMLE A+   RGT I+ VL+C +D+G      G VP DY+  D   +E  +DRLRV   + +LV IA++WVN+Y  +P + R LF H H+  ACR LGV++++L+
Sbjct:  423 QDSHMFGLSQLYQMRGRVGRSDKAAYTYLLYGPDVRLTADAKRRLKALRELSTLGSGYELANRDLEIRGAGSVFGTDQSGDVGAVGYELYMNMLEAALADARGTSIQAVLKCHIDLGLDLAARGSVPTDYIPLDVVAQE--VDRLRVARGYGDLVDIAQQWVNTYGPLPPAARALFAHHHVLAACRRLGVETITLD 616
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BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: A0A2W7B238_9CYAN (Transcription-repair-coupling factor n=1 Tax=Snowella sp. TaxID=2164131 RepID=A0A2W7B238_9CYAN)

HSP 1 Score: 170 bits (430), Expect = 2.630e-42
Identity = 86/189 (45.50%), Postives = 127/189 (67.20%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILG 567
            +DS  FGL+QLYQ+RGRVGRS + A+ +LLYP   +L+  A++RLKA++E S LGSG++LA RD+EIRG G++ G +QSG L+ IG++LYM ML++AI  V+G +I  V   +VD+    ++  F+P+DY+  D E++     R+   NS  ELV++A EW + Y  +P  V +LFK   L    R +G
Sbjct:  900 EDSQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNKRELTETARQRLKALQEFSQLGSGYQLATRDMEIRGVGSLLGAEQSGQLEAIGFDLYMEMLQEAIKEVQGQEIPKVEETQVDL----KVTAFIPSDYIP-DLEQKMAAYQRITAVNSIEELVQVASEWCDRYGVIPSPVEQLFKVIELKHIARSIG 1083
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BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: A3IN91_9CHRO (Transcription-repair-coupling factor n=1 Tax=Crocosphaera chwakensis CCY0110 TaxID=391612 RepID=A3IN91_9CHRO)

HSP 1 Score: 168 bits (426), Expect = 8.810e-42
Identity = 84/196 (42.86%), Postives = 131/196 (66.84%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLE 588
            +D+  FGL+QLYQ+RGRVGR+ + A+ +LLYP   QL+  A++RL+A++E S LGSG++LA RD+EIRG GN+ G +QSG ++ IG+ELYM+ML++AI  ++G +I  V   +VD+    +L  F+P DY+  D E++      + V NS +EL +IA EW + Y ++P+ V++L +   L    + LG   +  E
Sbjct:  898 EDAQKFGLAQLYQLRGRVGRAGIQAHAWLLYPSKAQLTETARKRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMDMLQEAIKEIQGQEIPKVEDTQVDL----QLTAFIPTDYIP-DMEQKMSAYRAIAVANSKKELAQIAAEWNDRYGKLPIPVQQLLQVIELKQLAKSLGFSRIKPE 1088
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BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: K9PYZ4_9CYAN (Transcription-repair-coupling factor n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=K9PYZ4_9CYAN)

HSP 1 Score: 168 bits (425), Expect = 1.190e-41
Identity = 86/199 (43.22%), Postives = 133/199 (66.83%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRV---CNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLE 588
            +DS  FGLSQLYQ+RGRVGRS + A+ +LLYP   +L+ +A++RL+A++E S LGSG++LA RD+EIRG GN+ G +QSG ++ IG++LYM+ML++ I  +RG +I  V  C+VD+    +L  F+P +Y+T    + E+++D  R+    NS  E ++IA EW   Y ++P SV +L +   L +  + LG   +  E
Sbjct:  898 EDSQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMDMLQECISEIRGQEIPQVDDCQVDL----KLTAFIPGNYIT----DTEQKLDAYRLITNANSKPERMQIASEWTERYGKLPSSVEQLLQVIELKSIAKSLGFSRIKPE 1088
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BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: UPI001FF4BB70 (transcription-repair coupling factor n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF4BB70)

HSP 1 Score: 167 bits (424), Expect = 1.590e-41
Identity = 87/193 (45.08%), Postives = 129/193 (66.84%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSL 579
            +D+H FGL+QLYQ+RGRVGR+ V AY +L YP    L+ EAK RL+A++E +HLGSG++LA RDL+IRGAG+I G +QSG +  +G++LY+ ML++AI  VRG +I  V   ++D+     L  F+PA+YM  + E++      L    + +EL +IA+EWVNSY E+PV V +L     +    + LG+  +
Sbjct:  871 EDAHRFGLAQLYQLRGRVGRAGVQAYAWLTYPSEELLTEEAKARLRAIQEFTHLGSGYQLALRDLDIRGAGDILGAEQSGQVAAVGFDLYLEMLQEAIQEVRGQEIPSVDDTQIDLN----LTAFIPANYMP-NLEQKLSAYRTLATAETPQELTKIAQEWVNSYGELPVPVVQLILVMRVKLLAKQLGISRI 1058
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BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: A0A401IG12_APHSA (Transcription-repair-coupling factor n=1 Tax=Aphanothece sacrum FPU1 TaxID=1920663 RepID=A0A401IG12_APHSA)

HSP 1 Score: 166 bits (420), Expect = 5.400e-41
Identity = 85/199 (42.71%), Postives = 132/199 (66.33%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLR---VCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLE 588
            +DS  FGLSQLYQ+RGRVGRS + A+ +LLYP   +L+  A++RL+A++E S LGSG++LA RD+EIRG GN+ G +QSG ++ IG+E YM ML++AI  ++G +I  V   ++D+    +L  F+PADY+     + +++ID  R   + NS  +L +IA +W++ Y ++P SV++LF    L    + LG   +  E
Sbjct:  898 EDSQKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTETARQRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGFEFYMEMLQEAIKEIQGQEIPKVEDTQIDL----QLTAFIPADYIP----DLQQKIDAYRTITLANSKEDLTQIAADWIDRYGKIPSSVQQLFAIIELKQIAKSLGFSRIKPE 1088
[Close]
BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: B1X1M8_CROS5 (Transcription-repair-coupling factor n=10 Tax=Oscillatoriophycideae TaxID=1301283 RepID=B1X1M8_CROS5)

HSP 1 Score: 166 bits (419), Expect = 7.300e-41
Identity = 84/196 (42.86%), Postives = 128/196 (65.31%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLE 588
            +D+  FGL+QLYQ+RGRVGRS + A+ +LLYP   QL+  A++RL+A++E S LGSG++LA RD+EIRG GN+ G +QSG ++ IG+ELYM ML++AI  ++G +I  V   ++D+    +L  F+P +Y+  D E++      + V NS +EL +IA EW + Y  +PV V +L +   L    + LG   +  E
Sbjct:  898 EDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPSKAQLTETARQRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMESIGFELYMEMLQEAIREIQGQEIPKVEDTQIDL----QLTAFIPTEYIP-DMEQKMSAYRGIAVANSKKELAQIAAEWNDRYGNLPVPVEQLLQVMELKQLAKSLGFSRIKPE 1088
[Close]
BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Match: A0A1Q2TXW1_9SYNE (Transcription-repair-coupling factor n=1 Tax=Synechococcus sp. NIES-970 TaxID=1827144 RepID=A0A1Q2TXW1_9SYNE)

HSP 1 Score: 166 bits (419), Expect = 7.300e-41
Identity = 84/196 (42.86%), Postives = 130/196 (66.33%), Query Frame = 1 
Query:    1 QDSHMFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHLGSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGTDIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFRELVRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLE 588
            +D+  FGLSQLYQ+RGRVGRS + A+ +LLYP   +L+ +A++RL+A++E S LGSG++LA RD+EIRG GN+ G +QSG ++ IG+ELYM ML++ I  +RG +I  V  C++D+    +L  F+PA+Y+  D +++      +   NS  ELV+IA +W + Y ++P SV +L +   L    + LG   +  E
Sbjct:  898 EDAQRFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFELYMEMLQECINEIRGEEIPQVDDCQIDL----KLTAFIPANYIP-DPDQKLAAYRLITRANSRPELVQIAADWGDRYGQLPPSVEQLLQVIELKAIAKSLGFSRIKPE 1088
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14736.3445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDP5_ECTSI4.700e-21376.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUP0_9PHAE2.250e-19374.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLF5_9STRA1.070e-7061.73P-loop containing nucleoside triphosphate hydrolas... [more]
A0A2W7B238_9CYAN2.630e-4245.50Transcription-repair-coupling factor n=1 Tax=Snowe... [more]
A3IN91_9CHRO8.810e-4242.86Transcription-repair-coupling factor n=1 Tax=Croco... [more]
K9PYZ4_9CYAN1.190e-4143.22Transcription-repair-coupling factor n=2 Tax=Pseud... [more]
UPI001FF4BB701.590e-4145.08transcription-repair coupling factor n=1 Tax=Synec... [more]
A0A401IG12_APHSA5.400e-4142.71Transcription-repair-coupling factor n=1 Tax=Aphan... [more]
B1X1M8_CROS57.300e-4142.86Transcription-repair-coupling factor n=10 Tax=Osci... [more]
A0A1Q2TXW1_9SYNE7.300e-4142.86Transcription-repair-coupling factor n=1 Tax=Synec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14736contigL-elsbetiae_contig14736:176..4392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score610.9
Seed ortholog evalue4.5e-172
Seed eggNOG ortholog2880.D8LDP5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsKOG0344@1,KOG0344@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1293
Cds size1281
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14736.3445.1prot_L-elsbetiae_contig14736.3445.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14736 176..4380 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.3206372-CDS-L-elsbetiae_contig14736:175..4181622815593.3206372-CDS-L-elsbetiae_contig14736:175..418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14736 176..418 -
1691682979.210949-CDS-L-elsbetiae_contig14736:175..4181691682979.210949-CDS-L-elsbetiae_contig14736:175..418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14736 176..418 -
1622815593.337297-CDS-L-elsbetiae_contig14736:987..16261622815593.337297-CDS-L-elsbetiae_contig14736:987..1626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14736 988..1626 -
1691682979.223388-CDS-L-elsbetiae_contig14736:987..16261691682979.223388-CDS-L-elsbetiae_contig14736:987..1626Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14736 988..1626 -
1622815593.352802-CDS-L-elsbetiae_contig14736:2562..27391622815593.352802-CDS-L-elsbetiae_contig14736:2562..2739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14736 2563..2739 -
1691682979.231763-CDS-L-elsbetiae_contig14736:2562..27391691682979.231763-CDS-L-elsbetiae_contig14736:2562..2739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14736 2563..2739 -
1622815593.3651633-CDS-L-elsbetiae_contig14736:4158..43801622815593.3651633-CDS-L-elsbetiae_contig14736:4158..4380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14736 4159..4380 -
1691682979.2399824-CDS-L-elsbetiae_contig14736:4158..43801691682979.2399824-CDS-L-elsbetiae_contig14736:4158..4380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14736 4159..4380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.3806577-UTR-L-elsbetiae_contig14736:4380..43921622815593.3806577-UTR-L-elsbetiae_contig14736:4380..4392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14736 4381..4392 -
1691682979.2483242-UTR-L-elsbetiae_contig14736:4380..43921691682979.2483242-UTR-L-elsbetiae_contig14736:4380..4392Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14736 4381..4392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14736.3445.1

>prot_L-elsbetiae_contig14736.3445.1 ID=prot_L-elsbetiae_contig14736.3445.1|Name=mRNA_L-elsbetiae_contig14736.3445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=427bp
MFGLSQLYQMRGRVGRSDVAAYTYLLYPPGHQLSNEAKRRLKAMRELSHL
GSGFELANRDLEIRGAGNIFGTDQSGDLKDIGYELYMNMLEKAIVSVRGT
DIEPVLRCKVDMGFGAELHGFVPADYMTCDDEERERQIDRLRVCNSFREL
VRIAKEWVNSYKEMPVSVRRLFKHTHLNTACRILGVDSLSLEFLPERDAS
LSDETDGPPGAGDGAAKGWTGAGGKKPMVEDLEAARESHAAQTRADGVLA
TAETGEGAAAAVSEVEVDAKGPAATAEINGRQAGVGTPPQVVRVGGAGGP
GPGAAAAAAAAARASSPGGVERGGKPAKMVPFAIMRGPEVEQERWEILFR
QGPMDYSQLKLVSFRGDAGGVAIRCPPGKEKYWLRGDREEWLDHLLSLLL
PLVEYVETKQSLQMKSSTRAPPQFVA*
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mRNA from alignment at L-elsbetiae_contig14736:176..4392-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14736.3445.1 ID=mRNA_L-elsbetiae_contig14736.3445.1|Name=mRNA_L-elsbetiae_contig14736.3445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4217bp|location=Sequence derived from alignment at L-elsbetiae_contig14736:176..4392- (Laminarionema elsbetiae ELsaHSoW15)
CAGGATTCTCACATGTTCGGGCTGTCTCAGCTGTACCAGATGCGTGGCCG
GGTGGGCCGGTCGGACGTGGCGGCCTACACGTACCTGCTCTATCCGCCGG
GCCACCAGCTGAGCAACGAGGCTAAGCGACGGCTGAAGGCGATGCGAGAG
CTGAGCCACCTGGGCTCAGGGTTCGAGCTGGCGAACCGAGACCTTGAGAT
CCGCGGAGCGGGGAATATTTTCGGCACGGACCAGGTGCGGTTTTTTTGTT
CCGTTGTTGGATGGGAGGTGACACAAGATATACCGCACCCCTCCCCTGGA
CCGACTTTGAGAGCTCTATTACTCCGCAACGAAGAGGGTGCCTGCCAGCA
CCAAACGACACATTTTCGGACAGCCCTTGACTAGATCTTTCCAACGCCAC
CCCCTTAAGGCAATATTCTGGCAGGGGAGGAATCGAGCTTTGAAAATCTG
TCCAGGGGGGTGTGGTATTTTGTGTCACCTACGGTATGCATGTATACCAT
GAGGCTGAGAGATTCGATCGTTGCCGTGTGTATGTATAAATACACCCCCA
CATGCTGAAGACAGTCCGGGGGCCCCTATGTATAGCCACATACATATCCT
TTTTTTATATTCGAAAGCTAGCAGCCGGTCTGTTGCTTCATTGAACATGC
AAGGAAAAAAAAGGGGGGCCATAGACTTATTTTCCGACCCCCCCCCCCCC
TGCACTTGAATGAATTCCTCGGCACGCAATAGCAACGGTTCAAATTTGGA
CAGGGCTTTGCATGGCACACGTTGTTGGGTGGGTGGGGTATGTATGTATG
CATGTTTATACGAAGCTTTGCTGCCTGGGAGGTACACAATGCGTGCATTT
TGCTGGCGCTGGCTCTGCGGTCTATAGGCGGGGTGCTGCTGTGTTACCTC
GTGCTGCTGTGTTACCTCATTTCTTAGCATTCAAAAGCCAATGTTTGAGT
ATTTCGTGTATTAATTTCACACCCTGTACAGCTACAACGTCGCTGATCGC
TATCGCTATAAGCTGTGTATAGCTGTCCAGGGCATGTAGCTGTCTGTAGA
CGCTAGCTGCGCAGGGTATTGAAACAATAGCTGTCTGCAGACAGCTAGCT
GCGCAGAATTTCGAAACATTAGTTGTCCGCAGACAGCTAGCTGCGCAGAA
TTTCGAAACAATGGCTGTCAGACAGCTAGCTGCGCAGTTTTTTTAAGCAA
TAGCTGTCTGCAGACAGCTAGATGCGCAGGGTTTTGAAACAATAGCTGTC
TGCCAGGCAGCTGACCGCTATCGTAGCTGTACAGGGTGTGATAAATACCC
CCCCCCCCCCAAACCAGAAAGTAAATAAACAAAATAAAATGAAATAAAAT
ACACCCGCATTTTTTTAGAACGTTTTGCCTTCACGTACATGCAAAGGTTT
TAGAGTAAGAGGTTATTATCTTGTGTAGTCTATCCCCCGTACTGTCAACC
CTGATTTATTTCATGCCTCGTCGGGAACCATCCTCCTTGACCTTGTTCCG
GGCGAGCGCCACCTTGTAGGATAGAACTGCGAGGTTCCATTTCGAAGCCT
GCATGCATATCTAGGTGTACGCTCGACCTGCATGATGGGTAGTACGTGGT
TTTCGGGTTGTGACCCGCTCGCTCGGACTCTCCCTTAACTGAATAACACA
CAGTCGGGCGACCTGAAAGACATCGGGTATGAGCTGTACATGAACATGCT
TGAGAAGGCCATCGTGTCCGTGAGGGGGACGGACATCGAGCCCGTGCTCC
GCTGCAAGGTGGACATGGGCTTCGGCGCCGAGCTCCATGGCTTCGTCCCT
GCTGACTACATGACCTGCGATGATGAGGAGGTATGTAAGAGGCGGGGCCC
GGTTTCTGTTCCCCTTGTTACCAGTACTGTGTTGTGTGTCTGTCTCTATG
TCTGTATTGTTTGTTGCTCTATTTCGTTTTGCGACCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCTCTCC
CCCCTCCCCCCCCTCCCTCTCTTCCCCTCCCCCCCGCTTCGCNNNNNNNN
NNTTTTTCTTTTCTTTTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTCCCGCCCCCCCCCCCCCCCCCCCCCCGACACGT
TTCGTATTTCTAGAGGGGATCACTCAGAGGGTATCACGCCGCAAAATTTA
GTGTTGTCACCAAAGAGGCGGTGTACACCAGGCAGTCGACACAACCCAAA
GCGGTGACTGGGGTCGTGTGGGCCAAAGAAAGGGATGTTTTGTCGCTCCA
CGTGGCACATTCACCCCACTCTCCTCGCATCGCTACCTTCGGGGGGGCGG
TTACTTACCAAGAGGTCAGCAGCACGAATTTAGGCGCGGGATCGACTGAT
TCGATTTTCGGGTCCTGGGCTCTCTTCCTTGCCCACATGTATCCTCTCCG
TTTCCTGTCCACACGCCGCCCTTTCATCGCCCCCACCCGTGCTCCCCCCC
CCCCTTCGCACCGCATCTACGTAACCACCTAATCTCTCGCAGTTTGGTCT
ATGACCTATTGTACTGCCTTTCGTTTCAACTTGGTGCGAACCGTCTGTCA
TTCCGAGGAAACAAACCAGCACAAACGTGCCCCCATCAGCAAGCACCGCC
TTGTGTCTCTCTCTCTCCTGCTCTACGACCTCCCCGTTGCCCGTCGAACC
AAAATTCCGAACAACACCATCCCGCCGCCGCCGCCGCCGCGCTCGCGATC
GAAAAAAAATACGCAGCGGGAGCGCCAGATCGACCGCCTGCGCGTGTGCA
ACTCCTTCCGAGAGCTGGTGCGCATCGCGAAGGAGTGGGTCAACTCGTAC
AAGGAGATGCCCGTCTCGGTGCGGCGGCTGTTCAAGCACACCCACCTCAA
CACGGCCTGCCGGATTCTCGGAGTCGACTCGCTGTCCCTCGAGTTCCTCC
CCGAGAGGGACGCCTCCCTGTCCGACGAGACCGACGGGCCCCCCGGCGCC
GGTGACGGGGCCGCCAAGGGCTGGACCGGGGCCGGAGGCAAGAAGCCCAT
GGTGGAGGACTTGGAGGCGGCTCGCGAGTCGCACGCGGCCCAGACCCGGG
CCGACGGGGTGTTGGCGACCGCCGAGACGGGGGAGGGGGCGGCGGCGGCG
GTGTCTGAGGTGGAGGTTGATGCTAAGGGCCCGGCGGCGACGGCAGAGAT
TAACGGTCGCCAGGCGGGGGTTGGAACGCCGCCGCAGGTGGTGCGGGTTG
GGGGTGCGGGTGGTCCGGGCCCGGGCGCGGCGGCGGCGGCCGCCGCCGCT
GCCCGCGCTTCTTCTCCGGGGGGTGTGGAACGGGGCGGGAAGCCGGCGAA
GATGGTGCCGTTCGCGATTATGAGAGGGCCGGAGGTGGAGCAGGAGCGGT
GGGAGGTACGATACGTGGCGCGCTTTTTTTGTGTGTGTGTGTTTTTTAAG
GCTCGCGTGTCGTGTTCGTGTTTGGATTTCTTTGGCCTTGGCAGCGGGAA
GCTTTCGTGTGTGTTCTCTCCGCAGCCTGCATGCCTGCCTGCCTGCCTGC
CTGGTCGTAGTTGGTCGTAGTTGGTCGTAGTTGGTCGTTGTTGGTCGTTG
GAAAGTGGCTTTGATGTACTAGGCTGTCTTCGGGCGGGTTTCAGCGAGTT
GATGAGGCGCGCAAACCTCTGTTGTTTGAACTTCTTTGGTCGTTCGAAGT
TGAAAAGGCGCTAGAGATGTGTCTGTGTTGTTGACGACAGGCCGAGGCTA
GAGAGCCCCTCCATCCCACGCTGCGCGCACAGGATGGCTGTACAAAGGCT
TCGGTCCGGGTAGTTAAGACCCGTTTTGCTGCCGCCAACCTCTGACGGCG
CGATGAACAGGTAGCGACACGGTGGTCGGTGCTGCAACCCTTCTCTAACC
CTTGTCTACCCCGCCATCGTGCACGCGTCCCATCTCTGCTCGCTCGACGT
GCTCAACGCGCATGGATTCGACAGATATTATTCCGGCAGGGGCCGATGGA
CTACTCCCAGCTGAAGCTCGTCAGCTTCCGCGGAGACGCTGGCGGGGTCG
CGATCCGATGTCCTCCGGGGAAGGAAAAATACTGGTTAAGAGGGGACAGA
GAGGAATGGCTCGACCACCTGCTGTCGCTGCTGCTCCCCCTGGTGGAGTA
TGTGGAGACGAAGCAAAGCTTGCAGATGAAGAGCTCCACCCGAGCGCCAC
CACAATTCGTGGCGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14736:176..4392-

>mRNA_L-elsbetiae_contig14736.3445.1 ID=mRNA_L-elsbetiae_contig14736.3445.1|Name=mRNA_L-elsbetiae_contig14736.3445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2562bp|location=Sequence derived from alignment at L-elsbetiae_contig14736:176..4392- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGGGCTGTCTCAGCTGTACCAGATGCGTGGCCGGGTGGGCCGGTC
GGACGTGGCGGCCTACACGTACCTGCTCTATCCGCCGGGCCACCAGCTGA
GCAACGAGGCTAAGCGACGGCTGAAGGCGATGCGAGAGCTGAGCCACCTG
GGCTCAGGGTTCGAGCTGGCGAACCGAGACCTTGAGATCCGCGGAGCGGG
GAATATTTTCGGCACGGACCAGATGTTCGGGCTGTCTCAGCTGTACCAGA
TGCGTGGCCGGGTGGGCCGGTCGGACGTGGCGGCCTACACGTACCTGCTC
TATCCGCCGGGCCACCAGCTGAGCAACGAGGCTAAGCGACGGCTGAAGGC
GATGCGAGAGCTGAGCCACCTGGGCTCAGGGTTCGAGCTGGCGAACCGAG
ACCTTGAGATCCGCGGAGCGGGGAATATTTTCGGCACGGACCAGTCGGGC
GACCTGAAAGACATCGGGTATGAGCTGTACATGAACATGCTTGAGAAGGC
CATCGTGTCCGTGAGGGGGACGGACATCGAGCCCGTGCTCCGCTGCAAGG
TGGACATGGGCTTCGGCGCCGAGCTCCATGGCTTCGTCCCTGCTGACTAC
ATGACCTGCGATGATGAGGAGTCGGGCGACCTGAAAGACATCGGGTATGA
GCTGTACATGAACATGCTTGAGAAGGCCATCGTGTCCGTGAGGGGGACGG
ACATCGAGCCCGTGCTCCGCTGCAAGGTGGACATGGGCTTCGGCGCCGAG
CTCCATGGCTTCGTCCCTGCTGACTACATGACCTGCGATGATGAGGAGCG
GGAGCGCCAGATCGACCGCCTGCGCGTGTGCAACTCCTTCCGAGAGCTGG
TGCGCATCGCGAAGGAGTGGGTCAACTCGTACAAGGAGATGCCCGTCTCG
GTGCGGCGGCTGTTCAAGCACACCCACCTCAACACGGCCTGCCGGATTCT
CGGAGTCGACTCGCTGTCCCTCGAGTTCCTCCCCGAGAGGGACGCCTCCC
TGTCCGACGAGACCGACGGGCCCCCCGGCGCCGGTGACGGGGCCGCCAAG
GGCTGGACCGGGGCCGGAGGCAAGAAGCCCATGGTGGAGGACTTGGAGGC
GGCTCGCGAGTCGCACGCGGCCCAGACCCGGGCCGACGGGGTGTTGGCGA
CCGCCGAGACGGGGGAGGGGGCGGCGGCGGCGGTGTCTGAGGTGGAGGTT
GATGCTAAGGGCCCGGCGGCGACGGCAGAGATTAACGGTCGCCAGGCGGG
GGTTGGAACGCCGCCGCAGGTGGTGCGGGTTGGGGGTGCGGGTGGTCCGG
GCCCGGGCGCGGCGGCGGCGGCCGCCGCCGCTGCCCGCGCTTCTTCTCCG
GGGGGTGTGGAACGGGGCGGGAAGCCGGCGAAGATGGTGCCGTTCGCGAT
TATGAGAGGGCCGGAGGTGGAGCAGGAGCGGTGGGAGCGGGAGCGCCAGA
TCGACCGCCTGCGCGTGTGCAACTCCTTCCGAGAGCTGGTGCGCATCGCG
AAGGAGTGGGTCAACTCGTACAAGGAGATGCCCGTCTCGGTGCGGCGGCT
GTTCAAGCACACCCACCTCAACACGGCCTGCCGGATTCTCGGAGTCGACT
CGCTGTCCCTCGAGTTCCTCCCCGAGAGGGACGCCTCCCTGTCCGACGAG
ACCGACGGGCCCCCCGGCGCCGGTGACGGGGCCGCCAAGGGCTGGACCGG
GGCCGGAGGCAAGAAGCCCATGGTGGAGGACTTGGAGGCGGCTCGCGAGT
CGCACGCGGCCCAGACCCGGGCCGACGGGGTGTTGGCGACCGCCGAGACG
GGGGAGGGGGCGGCGGCGGCGGTGTCTGAGGTGGAGGTTGATGCTAAGGG
CCCGGCGGCGACGGCAGAGATTAACGGTCGCCAGGCGGGGGTTGGAACGC
CGCCGCAGGTGGTGCGGGTTGGGGGTGCGGGTGGTCCGGGCCCGGGCGCG
GCGGCGGCGGCCGCCGCCGCTGCCCGCGCTTCTTCTCCGGGGGGTGTGGA
ACGGGGCGGGAAGCCGGCGAAGATGGTGCCGTTCGCGATTATGAGAGGGC
CGGAGGTGGAGCAGGAGCGGTGGGAGATATTATTCCGGCAGGGGCCGATG
GACTACTCCCAGCTGAAGCTCGTCAGCTTCCGCGGAGACGCTGGCGGGGT
CGCGATCCGATGTCCTCCGGGGAAGGAAAAATACTGGTTAAGAGGGGACA
GAGAGGAATGGCTCGACCACCTGCTGTCGCTGCTGCTCCCCCTGGTGGAG
TATGTGGAGACGAAGCAAAGCTTGCAGATGAAGAGCTCCACCCGAGCGCC
ACCACAATTCGTGGCGTAAATATTATTCCGGCAGGGGCCGATGGACTACT
CCCAGCTGAAGCTCGTCAGCTTCCGCGGAGACGCTGGCGGGGTCGCGATC
CGATGTCCTCCGGGGAAGGAAAAATACTGGTTAAGAGGGGACAGAGAGGA
ATGGCTCGACCACCTGCTGTCGCTGCTGCTCCCCCTGGTGGAGTATGTGG
AGACGAAGCAAAGCTTGCAGATGAAGAGCTCCACCCGAGCGCCACCACAA
TTCGTGGCGTAA
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