mRNA_L-elsbetiae_contig1473.3439.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A097IUM0_9PHAE (Malate dehydrogenase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUM0_9PHAE) HSP 1 Score: 170 bits (431), Expect = 6.930e-44 Identity = 93/114 (81.58%), Postives = 98/114 (85.96%), Query Frame = 1 Query: 1 GAVAVVSMGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDDAFGPSPGSSSSLPRARPACTTPPASGSGGGSNGIPPTSSL 342 G VAVVSMGVMSDGNPFGVPEGLFCSFPVRC+GNGEWAFD+GFLLKEEAG+QLSLSVEEL EEKAMV EALGDDA GPSPGSSS LP A PAC A+ +G SNG PP SSL Sbjct: 311 GKVAVVSMGVMSDGNPFGVPEGLFCSFPVRCTGNGEWAFDEGFLLKEEAGHQLSLSVEELQEEKAMVAEALGDDACGPSPGSSS-LPPALPACAKS-ATTNGRASNGTPPISSL 422
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: D7FQW0_ECTSI (Cytosolic malate dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW0_ECTSI) HSP 1 Score: 123 bits (309), Expect = 2.880e-30 Identity = 70/107 (65.42%), Postives = 78/107 (72.90%), Query Frame = 1 Query: 22 MGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDDAFGPSPGSSSSLPRARPACTTPPASGSGGGSNGIPPTSSL 342 MGV SDGNPFGVP GLFCSFPV C G+GEW+F + FLLKEEAG+QLSLSV+EL EE++MVVEALG+D GPSPGSS S R A G SNG P SSL Sbjct: 1 MGVASDGNPFGVPGGLFCSFPVLCRGDGEWSFAEEFLLKEEAGHQLSLSVKELQEERSMVVEALGEDTSGPSPGSSISPSRGGAATK--------GCSNGGTPISSL 99
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A097IUP1_9PHAE (Malate dehydrogenase n=1 Tax=Colpomenia sinuosa TaxID=87236 RepID=A0A097IUP1_9PHAE) HSP 1 Score: 132 bits (332), Expect = 4.040e-30 Identity = 65/76 (85.53%), Postives = 70/76 (92.11%), Query Frame = 1 Query: 1 GAVAVVSMGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDDAF 228 GA VVSMGV SDGNPFGVPEGLFCSFPVRC G+G+WAF +GFLLKEEAG+QLSLSV+EL EEKAMVVEALGDDAF Sbjct: 312 GAPQVVSMGVASDGNPFGVPEGLFCSFPVRCLGDGDWAFAEGFLLKEEAGHQLSLSVKELQEEKAMVVEALGDDAF 387
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A097IUJ7_SCYLO (Malate dehydrogenase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A097IUJ7_SCYLO) HSP 1 Score: 128 bits (321), Expect = 1.540e-28 Identity = 73/117 (62.39%), Postives = 86/117 (73.50%), Query Frame = 1 Query: 1 GAVAVVSMGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDDAFGPSPGSSSSLPRARPACTTPPASGSGG-----GSNGIPPTS 336 GA +VSMGV SDGNPFGVPEGLFCSFPVRC G+G+W+F +GFLLKEEAG+QLSLSV+EL EEKAMV++ALGD A P S PR A T A+ +GG G+NG P +S Sbjct: 320 GAPQIVSMGVASDGNPFGVPEGLFCSFPVRCPGDGDWSFAEGFLLKEEAGHQLSLSVKELQEEKAMVLDALGDGALEQPPPS----PRGANAGTADAAAATGGKVPSNGTNGTPISS 432
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A6H5KVV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV0_9PHAE) HSP 1 Score: 123 bits (309), Expect = 6.180e-27 Identity = 73/110 (66.36%), Postives = 81/110 (73.64%), Query Frame = 1 Query: 13 VVSMGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDDAFGPSPGSSSSLPRARPACTTPPASGSGGGSNGIPPTSSL 342 VVSMGV SDGNPFGVP GLFCSFPV C G+GEW+F + FLLKEEAG+QLSLSV+EL EE++MVVEALG+D GPSPGSS S R A G SNG P SSL Sbjct: 333 VVSMGVASDGNPFGVPGGLFCSFPVLCRGDGEWSFAEEFLLKEEAGHQLSLSVKELQEERSMVVEALGED--GPSPGSSISPSRGGAATK--------GCSNGGTPISSL 432
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A097IUL1_9PHAE (Malate dehydrogenase n=1 Tax=Scytosiphon dotyi TaxID=180438 RepID=A0A097IUL1_9PHAE) HSP 1 Score: 122 bits (306), Expect = 1.700e-26 Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 1 Query: 13 VVSMGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDDA 225 +VSMGV SDGNPFGVPEGLFCSFPVRC G+GEW+F +GFLLKEEAG+QLSLSV+EL EEKAMV++ALG DA Sbjct: 331 IVSMGVASDGNPFGVPEGLFCSFPVRCLGDGEWSFAEGFLLKEEAGHQLSLSVQELQEEKAMVLDALGGDA 401
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A097IUP6_SACJA (Malate dehydrogenase n=2 Tax=Saccharina TaxID=309357 RepID=A0A097IUP6_SACJA) HSP 1 Score: 99.8 bits (247), Expect = 6.200e-19 Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 Query: 16 VSMGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDDA 225 VSMGV SDGNPFGVPEGLFCSFPV C G+GEWAF +G+ L EEA QL S+ EL EEK++V E LG+ A Sbjct: 308 VSMGVTSDGNPFGVPEGLFCSFPVHCGGDGEWAFAEGYRLPEEAERQLEASIAELREEKSIVSEMLGEGA 377
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A097IUM7_UNDPI (Malate dehydrogenase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A097IUM7_UNDPI) HSP 1 Score: 92.0 bits (227), Expect = 2.370e-16 Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 1 Query: 16 VSMGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDD-AFGPSPGSSSSLPRARPA 276 VSMGV +DGNPFGVPEGLFCS PV C G+GEWAF + + L E QL S+EEL EEKAMV E LG+ A G +P SS PA Sbjct: 313 VSMGVPTDGNPFGVPEGLFCSLPVHCRGDGEWAFAEKYRLPCEGERQLDASIEELREEKAMVSEMLGEGMAAGGAPTPSSPASAVAPA 400
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A097IUK3_9PHAE (Malate dehydrogenase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A097IUK3_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 2.670e-13 Identity = 52/107 (48.60%), Postives = 62/107 (57.94%), Query Frame = 1 Query: 16 VSMGVMSDGNPFGVPEGLFCSFPVRC-----SGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEALGDDAFGPSPGSSSSLPRARPACTTPPASGSGGGSNG 321 VSMGV SDGNPFGVPEGL CSFPV+C + G W FD F L E+ QL++SV EL EE+ M L PS G SS P +T A+G+G G+ G Sbjct: 296 VSMGVFSDGNPFGVPEGLVCSFPVQCGDLSGANRGGWNFDSDFRLTEDVSRQLAVSVAELEEEREMAFSILNGGQSTPSEGPPSSAPVV---VSTATANGTGNGTLG 399
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Match: A0A097IUN1_9PHAE (Malate dehydrogenase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUN1_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 1.700e-10 Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 1 Query: 16 VSMGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVEELLEEKAMVVEAL 213 VSMGV +DGNPFGV EG+F S PVRC+ G+W +D+GF L ++ L SV EL +EKA ++ L Sbjct: 303 VSMGVTTDGNPFGVSEGIFSSLPVRCTLGGDWNYDEGFSLNDDVRRHLEASVAELEDEKATALKML 368 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1473.3439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1473.3439.1 >prot_L-elsbetiae_contig1473.3439.1 ID=prot_L-elsbetiae_contig1473.3439.1|Name=mRNA_L-elsbetiae_contig1473.3439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp MGVMSDGNPFGVPEGLFCSFPVRCSGNGEWAFDDGFLLKEEAGYQLSLSVback to top mRNA from alignment at L-elsbetiae_contig1473:8313..11449+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1473.3439.1 ID=mRNA_L-elsbetiae_contig1473.3439.1|Name=mRNA_L-elsbetiae_contig1473.3439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3137bp|location=Sequence derived from alignment at L-elsbetiae_contig1473:8313..11449+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1473:8313..11449+ >mRNA_L-elsbetiae_contig1473.3439.1 ID=mRNA_L-elsbetiae_contig1473.3439.1|Name=mRNA_L-elsbetiae_contig1473.3439.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig1473:8313..11449+ (Laminarionema elsbetiae ELsaHSoW15)back to top |