mRNA_L-elsbetiae_contig14718.3427.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14718.3427.1
Unique NamemRNA_L-elsbetiae_contig14718.3427.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14718.3427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14718contigL-elsbetiae_contig14718:1690..2287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size501
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.2222157-CDS-L-elsbetiae_contig14718:1689..21901622815592.2222157-CDS-L-elsbetiae_contig14718:1689..2190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14718 1690..2190 +
1691682978.6603289-CDS-L-elsbetiae_contig14718:1689..21901691682978.6603289-CDS-L-elsbetiae_contig14718:1689..2190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14718 1690..2190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815592.2351372-UTR-L-elsbetiae_contig14718:2190..22871622815592.2351372-UTR-L-elsbetiae_contig14718:2190..2287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14718 2191..2287 +
1691682978.6726785-UTR-L-elsbetiae_contig14718:2190..22871691682978.6726785-UTR-L-elsbetiae_contig14718:2190..2287Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14718 2191..2287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14718.3427.1prot_L-elsbetiae_contig14718.3427.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14718 1690..2190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14718.3427.1

>prot_L-elsbetiae_contig14718.3427.1 ID=prot_L-elsbetiae_contig14718.3427.1|Name=mRNA_L-elsbetiae_contig14718.3427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
GRLGRFVLSCVSWRERCGYVLSGVSVFLSPPLREGTIKSSRGFDWKISVW
PLARDPKLGTVVRTAVVCVRAYMHACTNATPSAVDHRRRGRGHPCPQMQL
LLVLRGFERGFLLKSKATLVVANAYIPCATGRRGALPSGGGRRVFGLLGG
RQIHGCRKGCTSDASN*
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mRNA from alignment at L-elsbetiae_contig14718:1690..2287+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14718.3427.1 ID=mRNA_L-elsbetiae_contig14718.3427.1|Name=mRNA_L-elsbetiae_contig14718.3427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=598bp|location=Sequence derived from alignment at L-elsbetiae_contig14718:1690..2287+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGCCTTGGGCGGTTTGTGCTATCTTGCGTATCATGGAGAGAGAGGTG
TGGATATGTCCTGTCGGGTGTTTCTGTTTTCCTTTCCCCCCCTCTGAGGG
AGGGAACGATAAAATCAAGCCGGGGTTTTGATTGGAAAATATCCGTGTGG
CCGTTGGCTCGGGACCCGAAGCTCGGAACAGTTGTACGAACCGCTGTGGT
GTGTGTGCGCGCGTACATGCATGCATGCACGAACGCCACCCCCAGCGCAG
TTGACCACCGGAGACGGGGGCGGGGGCACCCCTGTCCGCAGATGCAACTG
CTATTGGTTCTCCGCGGATTTGAACGAGGCTTTCTTCTCAAAAGCAAGGC
GACACTCGTGGTGGCGAATGCGTATATACCATGCGCCACCGGCCGTCGTG
GTGCTTTGCCCAGTGGCGGGGGGCGGCGGGTGTTTGGATTGTTGGGCGGA
AGACAGATACATGGGTGCAGGAAGGGGTGCACATCCGATGCGAGCAACTA
AAACCGCCACACGATTCGAAGAAAAGAGGCGTTTTAGACACGCTCGCTGC
ACCTTCTTGGACGCCGACGTCCAGATCAAACCAAGGGTGCCCCGTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14718:1690..2287+

>mRNA_L-elsbetiae_contig14718.3427.1 ID=mRNA_L-elsbetiae_contig14718.3427.1|Name=mRNA_L-elsbetiae_contig14718.3427.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig14718:1690..2287+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCGCCTTGGGCGGTTTGTGCTATCTTGCGTATCATGGAGAGAGAGGTG
TGGATATGTCCTGTCGGGTGTTTCTGTTTTCCTTTCCCCCCCTCTGAGGG
AGGGAACGATAAAATCAAGCCGGGGTTTTGATTGGAAAATATCCGTGTGG
CCGTTGGCTCGGGACCCGAAGCTCGGAACAGTTGTACGAACCGCTGTGGT
GTGTGTGCGCGCGTACATGCATGCATGCACGAACGCCACCCCCAGCGCAG
TTGACCACCGGAGACGGGGGCGGGGGCACCCCTGTCCGCAGATGCAACTG
CTATTGGTTCTCCGCGGATTTGAACGAGGCTTTCTTCTCAAAAGCAAGGC
GACACTCGTGGTGGCGAATGCGTATATACCATGCGCCACCGGCCGTCGTG
GTGCTTTGCCCAGTGGCGGGGGGCGGCGGGTGTTTGGATTGTTGGGCGGA
AGACAGATACATGGGTGCAGGAAGGGGTGCACATCCGATGCGAGCAACTA
AGGCCGCCTTGGGCGGTTTGTGCTATCTTGCGTATCATGGAGAGAGAGGT
GTGGATATGTCCTGTCGGGTGTTTCTGTTTTCCTTTCCCCCCCTCTGAGG
GAGGGAACGATAAAATCAAGCCGGGGTTTTGATTGGAAAATATCCGTGTG
GCCGTTGGCTCGGGACCCGAAGCTCGGAACAGTTGTACGAACCGCTGTGG
TGTGTGTGCGCGCGTACATGCATGCATGCACGAACGCCACCCCCAGCGCA
GTTGACCACCGGAGACGGGGGCGGGGGCACCCCTGTCCGCAGATGCAACT
GCTATTGGTTCTCCGCGGATTTGAACGAGGCTTTCTTCTCAAAAGCAAGG
CGACACTCGTGGTGGCGAATGCGTATATACCATGCGCCACCGGCCGTCGT
GGTGCTTTGCCCAGTGGCGGGGGGCGGCGGGTGTTTGGATTGTTGGGCGG
AAGACAGATACATGGGTGCAGGAAGGGGTGCACATCCGATGCGAGCAACT
AA
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