mRNA_L-elsbetiae_contig147.3414.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: A0A6H5L263_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L263_9PHAE) HSP 1 Score: 450 bits (1157), Expect = 1.020e-151 Identity = 278/480 (57.92%), Postives = 318/480 (66.25%), Query Frame = 3 Query: 171 LLVYNTGQQPATTRFDDVPAAEGFGPRVPEEGFAGRLQVAKPDIYACSQIDGPAKAP---SSTATXXXXXXT--GGSRPTPTDSTLRPATTRAHAGDTDSSTSTPVSMSRYERYQHGSEVLDAVSASAEEAAG---GGGEGEELPSAVLISRSPKDDPGDCSAEAMTFEYKAXXXXXXXXXXXXXRAGGFGGLLRFFSVLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYLDNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPITLRPAPAP-SSSTPS----------AVLSPPLAQGTPSAAVAGXXXXXXXXXXXXXXDAVGGDRLPLLSNSRGAASDGGSIQETSPV 1553 +LVYN G TTRFDDVP+ + FGPR+PEEGFAGRLQ+A+P++YACS I GP S+TA GG+ P P+ TRAH+G S P+++SR E+L+AVS +A GE E+LPSA LISRS KDDP C TFE K VLNAQ AGF MV+V+DS +E+LFKMG SS K + + VEIP+VLVSHASGLAL LI SD RGPE+Y+DN DPFGMFVTV+LTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEV VE GSRLEGDSCPVCLE+Y++GDKLRSLPCQHAFHAGCITPWLTQRQR+CPMCKDP+TL AP +SS+PS AV++ P Q + V D GGDRLPLLSNSRGA GGSIQ+TSPV Sbjct: 31 ILVYNEG----TTRFDDVPSMDNFGPRIPEEGFAGRLQLAQPNVYACSAISGPLSTTAVASATAVNEAAGELDFGGAAP--------PSRTRAHSGV---SRGMPLAVSRQPPR---GEILEAVSTTAAATXXXXXAAGE-EDLPSAALISRSEKDDPSGC-----TFETK---------------------------VLNAQGAGFSMVIVYDSREENLFKMGRSSSKGAKHPKVEIPLVLVSHASGLALKALIETASDTRGPEVYVDNTDPFGMFVTVDLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVRVEEGSRLEGDSCPVCLEAYRIGDKLRSLPCQHAFHAGCITPWLTQRQRSCPMCKDPVTLTVGLAPPTSSSPSSXXXXXXXXAAVITAPAMQPAHADGV------------ERGDDGAGGDRLPLLSNSRGAPIGGGSIQDTSPV 447
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: A0A836C717_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C717_9STRA) HSP 1 Score: 104 bits (260), Expect = 5.850e-21 Identity = 65/181 (35.91%), Postives = 92/181 (50.83%), Query Frame = 3 Query: 942 IYLDNADPFG-MFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCP----------------------------------VCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPITLRPAPAPSSSTPSAVLS 1379 +Y+DN DP+ +F ++N+TM +VT FLLALL C S+ + + R L R E+ + T RP+SL + +LPEV V AG LE D +CLE Y +G++L L C H H C+ PW+++RQRTCP+CK + P P TPS+ S Sbjct: 109 VYVDNTDPYEQLFFSLNMTMVAVVTTFLLALLLCASLFLCSSERLLGRREAALRST-RPLSLAQAARLPEVVVAAGGDLEKDRSEKIMIALNGSAQRLKVCCGTVXXXXXXXXXXXXXSICLEDYTVGERLVRLTCAHVMHRACVLPWISERQRTCPLCKTEV----VPPPPLRTPSSAAS 284
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: A0A8B7T419_HIPAR (E3 ubiquitin-protein ligase RNF167 isoform X3 n=3 Tax=Microchiroptera TaxID=30560 RepID=A0A8B7T419_HIPAR) HSP 1 Score: 100 bits (248), Expect = 7.020e-20 Identity = 70/204 (34.31%), Postives = 109/204 (53.43%), Query Frame = 3 Query: 720 GLLRFFSVLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYL--DNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPI 1325 GL+R +VLNAQ AG+G VV + L M +S++ + IP V + S L L +G + L DN+ P G + L F + G L+ L G++M+V ++ +R + NR ++ ++ Q+P + G + D C +CL+ Y+ GDKLR LPC HA+H+ C+ PWLTQ ++TCP+CK P+ Sbjct: 24 GLIR--AVLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQ--IWIPSVFIGERSSEYLRALFVYE---KGARVLLVPDNSFPLGYY----LIPFTGIVGLLV--LAMGAVMIVRCIQHRKRLQQ-----NR-LTKEQLKQIPTHDYQKGDQY--DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 206
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: G3VTW2_SARHA (RING-type E3 ubiquitin transferase n=15 Tax=Metatheria TaxID=9263 RepID=G3VTW2_SARHA) HSP 1 Score: 100 bits (248), Expect = 1.760e-19 Identity = 71/197 (36.04%), Postives = 104/197 (52.79%), Query Frame = 3 Query: 741 VLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYL--DNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPI 1325 VLNAQ AG+ VV++ L M +S++ + IP V V S L +L +G + L DN P G + L F V G L+ L G+++VV ++ +R + NR +S ++ Q+P + G E D C +CLE Y+ GDKLR LPC HA+H+ C+ PWLTQ ++TCP+CK P+ Sbjct: 98 VLNAQKAGYRAAVVYNVNSNELLNMVWNSEEIQQQ--IWIPSVFVGETSSEYLRSLFVYD---KGARVLLVPDNTFPLGYY----LIPFTGVVGLLV--LAMGAVLVVRCIQHRKRLQR-----NR-LSKEQLKQIPTHNYQKGD--EYDVCAICLEEYEDGDKLRILPCAHAYHSHCVDPWLTQTRKTCPICKQPV 275
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: UPI0004431BC1 (E3 ubiquitin-protein ligase RNF167 isoform X2 n=2 Tax=Monodelphis domestica TaxID=13616 RepID=UPI0004431BC1) HSP 1 Score: 99.8 bits (247), Expect = 2.180e-19 Identity = 70/197 (35.53%), Postives = 104/197 (52.79%), Query Frame = 3 Query: 741 VLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYL--DNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPI 1325 VLNAQ AG+ VV++ L M +S++ + IP V V S L +L +G + L DN P G + L F + G L+ L G+++VV ++ +R + NR +S ++ Q+P + G E D C +CLE Y+ GDKLR LPC HA+H+ C+ PWLTQ ++TCP+CK P+ Sbjct: 91 VLNAQRAGYRAAVVYNVNSNELLNMVWNSEEIQQQ--IWIPSVFVGETSSEYLRSLFVYD---KGARVLLVPDNTFPLGYY----LIPFTGIVGLLV--LAMGAVLVVRCIQHRKRLQR-----NR-LSKEQLKQIPTHDYQKGD--EYDVCAICLEEYEDGDKLRVLPCAHAYHSHCVDPWLTQTRKTCPICKQPV 268
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: F7D206_MONDO (RING-type E3 ubiquitin transferase n=6 Tax=Metatheria TaxID=9263 RepID=F7D206_MONDO) HSP 1 Score: 99.8 bits (247), Expect = 2.420e-19 Identity = 70/197 (35.53%), Postives = 104/197 (52.79%), Query Frame = 3 Query: 741 VLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYL--DNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPI 1325 VLNAQ AG+ VV++ L M +S++ + IP V V S L +L +G + L DN P G + L F + G L+ L G+++VV ++ +R + NR +S ++ Q+P + G E D C +CLE Y+ GDKLR LPC HA+H+ C+ PWLTQ ++TCP+CK P+ Sbjct: 98 VLNAQRAGYRAAVVYNVNSNELLNMVWNSEEIQQQ--IWIPSVFVGETSSEYLRSLFVYD---KGARVLLVPDNTFPLGYY----LIPFTGIVGLLV--LAMGAVLVVRCIQHRKRLQR-----NR-LSKEQLKQIPTHDYQKGD--EYDVCAICLEEYEDGDKLRVLPCAHAYHSHCVDPWLTQTRKTCPICKQPV 275
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: A0A8C5V256_MICMU (RING-type E3 ubiquitin transferase n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A8C5V256_MICMU) HSP 1 Score: 99.8 bits (247), Expect = 3.110e-19 Identity = 67/197 (34.01%), Postives = 105/197 (53.30%), Query Frame = 3 Query: 741 VLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYL--DNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPI 1325 VLNAQ AG+G +V + L M +S++ + IP V + S L TL +G + L DN+ P G + L F + G L+ L G++M+V ++ +R + NR ++ ++ Q+P + G + D C +CL+ Y+ GDKLR LPC HA+H+ C+ PWLTQ ++TCP+CK P+ Sbjct: 98 VLNAQKAGYGAAIVHNVNSNELLNMVWNSEEIQQQ--IWIPSVFIGERSSEYLRTLFVYE---KGARVLLVPDNSFPLGYY----LIPFTGIVGLLV--LAMGAVMIVRCIQHRKRLQR-----NR-LTKEQLKQIPTHDYQKGDQY--DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 275
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: UPI0018F299FB (E3 ubiquitin-protein ligase RNF167 isoform X2 n=1 Tax=Canis lupus familiaris TaxID=9615 RepID=UPI0018F299FB) HSP 1 Score: 100 bits (248), Expect = 3.300e-19 Identity = 69/197 (35.03%), Postives = 104/197 (52.79%), Query Frame = 3 Query: 741 VLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYL--DNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPI 1325 VLNAQ AG+G VV + L M +S++ + IP V + S L L +G + L DN+ P G + L F + G L+ L G++MVV ++ +R + NR +S ++ Q+P + G + D C +CL+ Y+ GDKLR LPC HA+H+ C+ PWLTQ ++TCP+CK P+ Sbjct: 131 VLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQ--IWIPSVFIGERSSEYLRALFVYE---KGARVLLVPDNSFPLGYY----LIPFTGIVGLLV--LAMGAVMVVRCIQHRKRLQR-----NR-LSKEQLKQIPTHDYQKGDQY--DVCAICLDEYEDGDKLRVLPCSHAYHSRCVDPWLTQTRKTCPICKQPV 308
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: A0A2Y9HKY5_NEOSC (RING-type E3 ubiquitin transferase n=28 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2Y9HKY5_NEOSC) HSP 1 Score: 98.6 bits (244), Expect = 3.780e-19 Identity = 68/197 (34.52%), Postives = 104/197 (52.79%), Query Frame = 3 Query: 741 VLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYL--DNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPI 1325 VLNAQ AG+G VV + L M +S++ + IP V + S L L +G + L DN+ P G + L F + G L+ L G++MVV ++ +R + NR ++ ++ Q+P + G + D C +CL+ Y+ GDKLR LPC HA+H+ C+ PWLTQ ++TCP+CK P+ Sbjct: 55 VLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQ--IWIPSVFIGERSSEYLRALFVYE---KGARVLLVPDNSFPLGYY----LIPFTGIVGLLV--LAMGAVMVVRCIQHRKRLQR-----NR-LTKEQLKQIPTHDYQKGDQY--DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 232
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Match: A0A8M1MUK2_NEOSC (E3 ubiquitin-protein ligase RNF167 isoform X3 n=4 Tax=Caniformia TaxID=379584 RepID=A0A8M1MUK2_NEOSC) HSP 1 Score: 98.6 bits (244), Expect = 3.850e-19 Identity = 68/197 (34.52%), Postives = 104/197 (52.79%), Query Frame = 3 Query: 741 VLNAQAAGFGMVVVFDSEQESLFKMGSSSDKRSHYLPVEIPVVLVSHASGLALMTLIAATSDPRGPEIYL--DNADPFGMFVTVNLTMFMLVTGFLLALLTCGSMMVVTLHRYLRRYESLVAGTNRPMSLPEVLQLPEVCVEAGSRLEGDSCPVCLESYQLGDKLRSLPCQHAFHAGCITPWLTQRQRTCPMCKDPI 1325 VLNAQ AG+G VV + L M +S++ + IP V + S L L +G + L DN+ P G + L F + G L+ L G++MVV ++ +R + NR ++ ++ Q+P + G + D C +CL+ Y+ GDKLR LPC HA+H+ C+ PWLTQ ++TCP+CK P+ Sbjct: 56 VLNAQKAGYGAAVVHNVNSNELLNMVWNSEEIQQQ--IWIPSVFIGERSSEYLRALFVYE---KGARVLLVPDNSFPLGYY----LIPFTGIVGLLV--LAMGAVMVVRCIQHRKRLQR-----NR-LTKEQLKQIPTHDYQKGDQY--DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPV 233 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig147.3414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig147.3414.1 >prot_L-elsbetiae_contig147.3414.1 ID=prot_L-elsbetiae_contig147.3414.1|Name=mRNA_L-elsbetiae_contig147.3414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=490bp MRWRQMFGLTSLLCLSLLVLAPSPCGSELLVYNTGQQPATTRFDDVPAAEback to top mRNA from alignment at L-elsbetiae_contig147:17375..26991- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig147.3414.1 ID=mRNA_L-elsbetiae_contig147.3414.1|Name=mRNA_L-elsbetiae_contig147.3414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9617bp|location=Sequence derived from alignment at L-elsbetiae_contig147:17375..26991- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig147:17375..26991- >mRNA_L-elsbetiae_contig147.3414.1 ID=mRNA_L-elsbetiae_contig147.3414.1|Name=mRNA_L-elsbetiae_contig147.3414.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2940bp|location=Sequence derived from alignment at L-elsbetiae_contig147:17375..26991- (Laminarionema elsbetiae ELsaHSoW15)back to top |