mRNA_L-elsbetiae_contig145.3299.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig145.3299.1
Unique NamemRNA_L-elsbetiae_contig145.3299.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig145.3299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig145contigL-elsbetiae_contig145:4697..9026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-22_003970.1
Exons3
Model size943
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig145.3299.1prot_L-elsbetiae_contig145.3299.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig145 5386..8997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.3052318-UTR-L-elsbetiae_contig145:4696..53851622815581.3052318-UTR-L-elsbetiae_contig145:4696..5385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig145 4697..5385 -
1691682972.2828662-UTR-L-elsbetiae_contig145:4696..53851691682972.2828662-UTR-L-elsbetiae_contig145:4696..5385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig145 4697..5385 -
1622815581.3493977-UTR-L-elsbetiae_contig145:8997..90261622815581.3493977-UTR-L-elsbetiae_contig145:8997..9026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig145 8998..9026 -
1691682972.3192973-UTR-L-elsbetiae_contig145:8997..90261691682972.3192973-UTR-L-elsbetiae_contig145:8997..9026Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig145 8998..9026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.3162296-CDS-L-elsbetiae_contig145:5385..54231622815581.3162296-CDS-L-elsbetiae_contig145:5385..5423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig145 5386..5423 -
1691682972.292324-CDS-L-elsbetiae_contig145:5385..54231691682972.292324-CDS-L-elsbetiae_contig145:5385..5423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig145 5386..5423 -
1622815581.326054-CDS-L-elsbetiae_contig145:6492..65981622815581.326054-CDS-L-elsbetiae_contig145:6492..6598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig145 6493..6598 -
1691682972.3013139-CDS-L-elsbetiae_contig145:6492..65981691682972.3013139-CDS-L-elsbetiae_contig145:6492..6598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig145 6493..6598 -
1622815581.3368745-CDS-L-elsbetiae_contig145:8916..89971622815581.3368745-CDS-L-elsbetiae_contig145:8916..8997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig145 8917..8997 -
1691682972.3102772-CDS-L-elsbetiae_contig145:8916..89971691682972.3102772-CDS-L-elsbetiae_contig145:8916..8997Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig145 8917..8997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig145.3299.1

>prot_L-elsbetiae_contig145.3299.1 ID=prot_L-elsbetiae_contig145.3299.1|Name=mRNA_L-elsbetiae_contig145.3299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MSGKEDESFPTRVAWELQTEFWPQAVEEDAESSLQKEEARVKAEAESIQC
TLEFPVNTNFIAGIIREIDATAGG*
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mRNA from alignment at L-elsbetiae_contig145:4697..9026-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig145.3299.1 ID=mRNA_L-elsbetiae_contig145.3299.1|Name=mRNA_L-elsbetiae_contig145.3299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4330bp|location=Sequence derived from alignment at L-elsbetiae_contig145:4697..9026- (Laminarionema elsbetiae ELsaHSoW15)
AAGCGAGGAACTTCCTGAGGGCGTTCGAGATGTCGGGGAAGGAGGACGAG
AGCTTTCCGACGCGCGTGGCGTGGGAGCTGCAGACCGAGTTTTGGCCGCA
GGCTGTCGAGGTGGGTGCGGGGGGGGGGGTCAGTCAGTCGATCCCAGTAC
CATAAGGTGACACAAGATACCACACCCCCTAGACCGAACTTTGGAGCTCC
ATTACTCCGTGGCCAAGAGAGTGCCAGCACCAAGCGACAAATTTTCCAGG
GTGGTACGCGGTGTTGTGATGGGATGGCATGCCATCACTTGATGGGATGG
TAATGGGACGGGATGGTAAAAAAACGACTGCATTTTGGTCCCATCACCAG
ATACTATCGCGTTACCACCACGCCAGTCGGAGACACCATCAGCAAAGACG
TGGTGGTCTCTGAACGCTTCACATCCCATCTAGCTCACCGTCACAGCTAC
TGGAGTTGCCATCATGCCGACCAAAAACCCATCGATACCACCTGTTCCTC
TATGCAGAGATTTGCCTCGAATACCACCCTGAACATCGGGCACTCGCCCC
TCCCCCCACCCAGTACAACGTACTTTCGGAGGGAGGGGTATGTAAGCGCA
GAAAATGTGTGATGGGGGGGGGTAGGGGGTTAGACCAGCGTCACCCACAA
CACACACGCAGCATCTACTGAAATACTGGAATGCGGGGGCGTGGACGGGA
TAGACGTGGCAGGGAATGTTGGTGTCTAGTGTCTGCCCGCTAGCCGCACG
TGGGTTTGCTAGCACGTTTGTACGCCGGCGTAGATACTACCAGCTGTCAA
GCGGAGAGGAACTTTTCCGCCCTCAAGCAGGTCCTTAGTGACATGCGTGC
CGTTACCCTGCCCCGAAAGATCGAGCAGATGCTGTTGCTCAGGCTCAAAC
AGACGCCTCATCTCCGGCTTGGCGCAAGTAGAGAAAGAGCTGACCGCATT
GAAGGCAAAGCACGACGTAAACGCGAAGCAAGCGGTTGCCGCCCTGAACA
AGTAGGGTTGCTGCCCCACTACGTTTCAATTGGCCGCTTTTGTTTTAGTT
CTTGCAGTTGAGTTTTTGGTTTTTGGCTTCGCGTATTGAAGCCAGATCTT
CAAGAGCAGTAGCAGTAGAACTTCGGCTGGAGTTGAGTTGGTCCCTGCAG
TTGGCGGTGGTCTAAAGAACAACCTGCAACTAGTTTTTTTCAGTTCTGTT
TGTTTTATTCCCTGCTGTTTGTGTGTAGACTATACTTCGAGGTATGCAAG
CAGGAGGGTACTGATAACACTGGCAACAAATATGTACGTGTACCTGATAA
TACTGGCAACAAATATGTATGAGTACCAGAGTTCTTGGTGTTACCGCCTT
CTCGCCACGCCAAGGTAAAATCTTCTCCATCCCATCACACTTACCGTCCC
GCTAGTTACCATCCCATCCCATCATGCGAAATCATCACTTACCATCCCAT
CCCATCAGTACCCTGCCCTTATACCATCCCATCCCATCCCATCACGGCAC
CATCCCATCCAATATCGTAATACCATCAGAAGTGGGCGCAAATACCATCC
CATCCCACGTGATGAGAAGGCTAAAACAATCTCCGCCCTGCGGCACCGCG
TACCACCCTGAATTTTTCGAACGGCCCTCCACTATTTAAACATTTTCAAC
GCCACTCCCTTTCGGCACTGGCACTCTTCTTCTTGCTGCTGGGGAGGAAT
CGAGCTTCGAAAGTGTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGG
TTTGTAACTACTGTTTTCGGAAGCTCATGTAGATCACTCCGTATATTGTT
GCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTTCTTCACATTAAAA
ACCGTTCCGATCTCTCCACCCAGTACCTCCATATGTCCCTACAATCCAAC
ACTTGATGCGGCCAACTCCCGTGGTCACGGGATAACTTCTACCTCAAAAA
AAAAGAAGTATATGAAAATAAAAATGGACCCGAAGGGTCAGCACGCGGTA
AAAATCAAAGACAAATAGATAGTGTGGAGCCCCTCGCTCCCCCCTACACA
CGCTATGCATACTCAGTCACGTTTCCCTGATAAATCGTCGAGGATAGAAG
AGAAAGTACTAGCTACATACATATAGTTGTTCTGGTTTCCCGAGCAAGTT
CCACGCCACACGCTTATTATCTAGATATTTATTTCCAACCTGGCAACGAA
GTGTCAACACCAACAACCTGATGCCACTGTTTTCATCCCATCCTACATCT
CTCCTAGCTAGGATACTGTGTACACATCTAAGGAGAATAACTCACTCGAA
AATACTGATGGATCTTGTACCACCCCTTATATCTGTGTGTGGTCCGGGAC
CGGGAGGGGGGTAAGTGAATCTATACAACCCTGTGTTGCCCACCCCGTGT
GTGCCCACGTGCTTGCCTTGGGTCACAGGAAGATGCGGAATCGTCCCTAC
AGAAGGAGGAGGCGAGAGTGAAAGCAGAGGCGGAAAGCATCCAGTGCACA
CTCGAATTCCCCGTGAACACCAACTTCATCGCAGGTGATGATGATGTGCT
CCCGGCAAACGTGTGTATGTATTATGTACGCAGACAGACGTCATGCATGC
CCCGCAAATGAAGAAGTTTGATGCGTAGATAGTCGATCTAGGTTTTAGAC
CTAGCTGTAGTAGTCTAGTCTATGTGAGATTTTAGGCTCGCCGAAGCAAG
AGGGCTAGCGTCTGCTGGCCTACCATACTGACGTGCTTGGAATCCACACA
CCGCCAGATGAGGCTTTCGAGGAGATCTTGGAAAAGACTGGAGTGCGTGC
ATGGGCGCACGTGTTGTTCGGCAGTGAAGGCTTGATGGCGTGGATGCATG
TATTTACTCCTTGCAAAAAAAGAAAAAAAAAACACGGCAGTATCTATCTA
TGTACCAGTTTGCCCGGGAATATAGTTCACATTTTAGTTGAGCATGATCA
ACACGTACTTCTTCTAAAACTCTGCAGCAATACTCCCACAGCCTGTTGAA
GATAGAAAAATGTAAAGTCCTAATCTAAAAAGCGGGGATGGATCATTATC
ATTCCCCCCCCGGTTTCCCAGGACTTTTCTGGTAAGGAAAATCAACATTT
TTCAACACCCTGATGATGACACGAAATAAAAAAATTGTTTATTTTATCCA
ATTTTTTTGTGTGTTGTCCGGTAACCCCCTGGCTTCCTGTGCCGATCCTG
CCTGCTTTAATTCAACGCTTATAATCGCTCCAACCGGCGAAAATAAAATA
AAACGAAAATAAAGTTGCCACTCCGGGCCGCAAAAAAAAAACGAAAAAAA
AACGAAAAAAAAAAGTGTTCAAGTGTTCGCCAAAGAAATGACGCTTCCGG
GGCAGATCCCATTTGCTTTCCCGTCAAATGTGAACTATATTCCCGGACAG
ACTGGTATGTTCTAATCTAGTGTCTAATTGACGCCGTACGTAGTAGTGGA
CGCCGTAGCCATGAGCGCTTGAAACCTCTTCGAGCAAATGATTGGCTCAC
ATCCCCGCCCTTGCTCGAGGCGAGCCACCGATCACATAGTACTGCTTCCG
CTCTTGATTGCTATCTATCTATGTATGTACTGTGCACCGGTCGAGCGCCA
CAGGTATCATCCGCGAAATAGATGCCACCGCGGGGGGATAAAAACCAAGC
GCGGCGCATGAAAGAGAGCCTCTACTGCAGCAGCAGGCTGCAGGCGGAAT
AACCTCGCGCCCGCAGCATTTTGACACGTGTCAGCAGCTGGTGATGTGCC
TGCGCGATGGCGAAGTGGGTGGAGAGACCATGTGTAGGTATTGATCGATG
TGTGGTGCAGTACAAGATAGCTTGAGTTGCTTTGGCGTGCCTCCGCGCTG
AGGGTGGTAACGCAGGCTGTACATCGTGTTCTTCGGGGCTCGGGCATTCA
TTCCTTGGCGGATTGATGGCCGATGCCGGTGACAGGATCGTTTTATCGCA
ACTATTTATGTGCAACCCGACATCGGTACGGGAGTTGTGAGGCCCGTAGA
TATAGTATGAATCGCAGCGCATATCTAGAATTGACTAGGGGGTCTGCGAA
TAGAAGAATCTAGTCTAGATTAGCTAGTGTGTATGTCCGGCAAACTTCCT
TCGATAACGTACGTGCAGTGTGTGACTGTTGTCGAGTCGGGTGCGTGTAC
GCGATGCGGCGGGTTTATTATTGTGGAGTGGCAGAGAATGGCTCGTTTTG
GCTATAAATGGGAAATTACCCTTAGACTACAGCTCGCAGCAGAGGACCAT
ATGACACACGCGCAATGAATTTTAATTGCATTGATTCTCGTACATGGATC
CACTTCTACGCAGGCAGCGCGACATGTTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig145:4697..9026-

>mRNA_L-elsbetiae_contig145.3299.1 ID=mRNA_L-elsbetiae_contig145.3299.1|Name=mRNA_L-elsbetiae_contig145.3299.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig145:4697..9026- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGGGAAGGAGGACGAGAGCTTTCCGACGCGCGTGGCGTGGGAGCT
GCAGACCGAGTTTTGGCCGCAGGCTGTCGAGATGTCGGGGAAGGAGGACG
AGAGCTTTCCGACGCGCGTGGCGTGGGAGCTGCAGACCGAGTTTTGGCCG
CAGGCTGTCGAGGAAGATGCGGAATCGTCCCTACAGAAGGAGGAGGCGAG
AGTGAAAGCAGAGGCGGAAAGCATCCAGTGCACACTCGAATTCCCCGTGA
ACACCAACTTCATCGCAGGAAGATGCGGAATCGTCCCTACAGAAGGAGGA
GGCGAGAGTGAAAGCAGAGGCGGAAAGCATCCAGTGCACACTCGAATTCC
CCGTGAACACCAACTTCATCGCAGGTATCATCCGCGAAATAGATGCCACC
GCGGGGGGATAAGTATCATCCGCGAAATAGATGCCACCGCGGGGGGATAA
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