mRNA_L-elsbetiae_contig14460.3288.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14460.3288.1
Unique NamemRNA_L-elsbetiae_contig14460.3288.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14460.3288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14460contigL-elsbetiae_contig14460:3524..3942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size419
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14460.3288.1prot_L-elsbetiae_contig14460.3288.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14460 3562..3861 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.9581592-UTR-L-elsbetiae_contig14460:3523..35611622815579.9581592-UTR-L-elsbetiae_contig14460:3523..3561Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14460 3524..3561 +
1691682971.4575133-UTR-L-elsbetiae_contig14460:3523..35611691682971.4575133-UTR-L-elsbetiae_contig14460:3523..3561Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14460 3524..3561 +
1622815579.9840317-UTR-L-elsbetiae_contig14460:3861..39421622815579.9840317-UTR-L-elsbetiae_contig14460:3861..3942Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14460 3862..3942 +
1691682971.4867766-UTR-L-elsbetiae_contig14460:3861..39421691682971.4867766-UTR-L-elsbetiae_contig14460:3861..3942Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14460 3862..3942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.9704018-CDS-L-elsbetiae_contig14460:3561..38611622815579.9704018-CDS-L-elsbetiae_contig14460:3561..3861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14460 3562..3861 +
1691682971.4698243-CDS-L-elsbetiae_contig14460:3561..38611691682971.4698243-CDS-L-elsbetiae_contig14460:3561..3861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14460 3562..3861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14460.3288.1

>prot_L-elsbetiae_contig14460.3288.1 ID=prot_L-elsbetiae_contig14460.3288.1|Name=mRNA_L-elsbetiae_contig14460.3288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MEECAHRTWGGAVSVDELGGERRVRALRSAQSSQTYLPTTGCLVQTLRTT
SEPNDGTCSTSQCRPDILSCLVYHAKPIDSMRLSTLTGSRCLPVGRAEQ*
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mRNA from alignment at L-elsbetiae_contig14460:3524..3942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14460.3288.1 ID=mRNA_L-elsbetiae_contig14460.3288.1|Name=mRNA_L-elsbetiae_contig14460.3288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=419bp|location=Sequence derived from alignment at L-elsbetiae_contig14460:3524..3942+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCAGAGCTCGTCGACACCTTGTTGTTCATAGTCATATGGAAGAGTGC
GCGCACAGAACATGGGGGGGGGCTGTTTCGGTCGATGAGCTTGGGGGCGA
ACGAAGGGTACGTGCGCTCCGTTCCGCCCAGAGCAGCCAAACGTACCTTC
CGACGACTGGTTGTTTGGTGCAAACACTCCGTACAACTTCAGAGCCCAAC
GACGGCACCTGCAGCACAAGCCAGTGCCGTCCAGATATCTTATCATGTCT
AGTATACCATGCGAAACCGATCGATAGCATGCGCTTGTCCACACTTACAG
GTAGCAGGTGTCTCCCGGTGGGGCGTGCGGAACAGTAGTGACATCTGCGG
GGTTATCTGGAAAGGGACATAAAACAAATGGAAGGAAGTCCACCACAACA
CCTTCAGGGGGAGAGCATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14460:3524..3942+

>mRNA_L-elsbetiae_contig14460.3288.1 ID=mRNA_L-elsbetiae_contig14460.3288.1|Name=mRNA_L-elsbetiae_contig14460.3288.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig14460:3524..3942+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGAGTGCGCGCACAGAACATGGGGGGGGGCTGTTTCGGTCGATGA
GCTTGGGGGCGAACGAAGGGTACGTGCGCTCCGTTCCGCCCAGAGCAGCC
AAACGTACCTTCCGACGACTGGTTGTTTGGTGCAAACACTCCGTACAACT
TCAGAGCCCAACGACGGCACCTGCAGCACAAGCCAGTGCCGTCCAGATAT
CTTATCATGTCTAGTATACCATGCGAAACCGATCGATAGCATGCGCTTGT
CCACACTTACAGGTAGCAGGTGTCTCCCGGTGGGGCGTGCGGAACAGTAG
ATGGAAGAGTGCGCGCACAGAACATGGGGGGGGGCTGTTTCGGTCGATGA
GCTTGGGGGCGAACGAAGGGTACGTGCGCTCCGTTCCGCCCAGAGCAGCC
AAACGTACCTTCCGACGACTGGTTGTTTGGTGCAAACACTCCGTACAACT
TCAGAGCCCAACGACGGCACCTGCAGCACAAGCCAGTGCCGTCCAGATAT
CTTATCATGTCTAGTATACCATGCGAAACCGATCGATAGCATGCGCTTGT
CCACACTTACAGGTAGCAGGTGTCTCCCGGTGGGGCGTGCGGAACAGTAG
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