mRNA_L-elsbetiae_contig1445.3281.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1445.3281.1 vs. uniprot
Match: D8LES1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES1_ECTSI) HSP 1 Score: 536 bits (1380), Expect = 1.160e-165 Identity = 487/1007 (48.36%), Postives = 550/1007 (54.62%), Query Frame = 1
Query: 1 RPHPTLAVADSDRTLILQRH---GRCNTSSKR-SAYFADSDTSSACGEHIPAAREVKPASRTPATAATATTPS--------GGSSRTGGRWILEGIRRSQQGQTRETPTIRDEQDR--------ASVFYGSVRFPASRVALWNRRPTGSPVVLTPESAAPILVLREQVVDLIASEL-SLAAEEVRGSAGAGDWGLRWHGVLGSAGDILQ--DCASDPRLAAXXXXXXXXXXXXXXXLALEIVGMGAGXAVGXXXXXXXXXXXXXXXXXXKAVPLSGRRRRAETVQGRAVAVTGAMSVEGXXXXXXXSTGPARWQSEGAPLRRAILDDRKRSIEGAKSADPAVFTPLRLQCSLK-KRGGXXXXXXXXXXSCSVSGDNGKDPPPRSPHRIADNSAAGAQRGRQACLRGASMLSLRGEMVVPALGVRLTPIAAPALLHTALFQSLLTRGAEAKLQSGLVTLNEGRRAVLLADNDPLSLRAHIVGVWVSGGXXXXXXXXXXXXXH---SARPSSPLGHPHAYPACLRFLLGFRGGXXXXXXXXXXXXXXXXXXASPSAFLVLHLPGGVGGGTPACFEACALHAGGTAARTAAAAGGAGLVSVSSVGFEQLDFSADVDVEVGRSDKGRERRGGXXXXXXXXXXXXXTNRTVVIGRLRRVSNLSAAGGAFGRALARERGRTRAAQPATSGGAAPPYLPAPSXXXXXXXXXXXXXSTPPPRSSQQPPLVVGRYHGANNRWHGRCQTAAAAVGEEEDGGPPAQ-DRPR-SPPAPMAALTKPMSHNPPVARQQQQRLPAGTNGTGTVTSTGGTPGVTHIPEALRPHVTHHSTSPTKPGSEVSRPPGPEXXXXXXXXXCVAEESGDGDWLAEEGHSRRRGNEPERSAEEEPLRXXXXXXXSQACCGRSTGIPGAGDGTRAVGGRYRPSSSPPL--GEGAALSSSINGVIAAAAVXXXXXXXXAPVTWSKPTSLDLLALDPAAREPTAXXXXXXXXXXXXFAYPHKKTSMVEASTNTS 2928
RPHPTLAV DS+RTLILQR G+ + + +R S+YFA + S E + + + T A +TA GGSSRTGGRWILEGIR S+QGQ + +D D A+VFYGSVRFPASRVALWNRRPTGSP+ LTPESAAPILVLR++ DLIASEL SLAAE G RWHGVLGS GDILQ ASDPRL A LALEI GM AG A XXXXXXXXX S XXXXXXX ++LDD + AKSADP FTPLRLQCSLK +RGG V G+ P R HR A ++ G+ G+ A L+GA+ LSLR EM+ PALGVRLTPIAAPALLHTAL+QSLL+RGAE KLQSGLVTLNEGRRAVLL+DNDPLSLRA IVGVWVSGG S R SPL HP+ YPACLRFLLGFRGG XXXXXXXXXX SP AFLVL LPGGVGGGTP C+EACA+ A +A T AAGG G+ V+SVGFEQLDFSADVDV VG G XXXXXXXXXXXXX NR VVI RLRRVS+L+AAGGAFGRALAR RGR R Q A +G A PP+LP+PS TPP S QQ P R GA RWH R + E +G Q DRP PP P+AA TKP+ H+P A + PA G + +T PE + H HHSTSP K G P V +G+G +GH R R P ++EE R S+G V GR SSSPP +G L S XXXXXXX W+ SLDLLAL P A TA A ++ SMVEASTNTS
Sbjct: 4 RPHPTLAVTDSERTLILQRRNSGGKPSRAKRRVSSYFAAEEASDTSAESLASCSRRDGRTGTTACISTADKTKDISSLAGGGGSSRTGGRWILEGIRHSRQGQVLQP--AKDGNDSIISPAGPAAAVFYGSVRFPASRVALWNRRPTGSPLTLTPESAAPILVLRQRAADLIASELLSLAAE-----------GERWHGVLGSTGDILQGSSLASDPRLLAASSSSSSNAPFSC--LALEIAGMKAGEAAXXXXXXXXXXRDGDTGELRP----SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLDDCINRVGAAKSADPPTFTPLRLQCSLKGRRGGATDSRGSGGCDNGVDGETS--PSARKQHRQAGSANGGSGAGQPAPLQGAATLSLRAEMIAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKLQSGLVTLNEGRRAVLLSDNDPLSLRAPIVGVWVSGGDSGGTGGVGTPSGQQQQSGRRLSPLTHPYVYPACLRFLLGFRGGSGASKSXXXXXXXXXX---SPVAFLVLQLPGGVGGGTPGCYEACAVSA---SAATPTAAGGGGM-RVASVGFEQLDFSADVDVSVG---------GXXXXXXXXXXXXXXXNRAVVIARLRRVSSLTAAGGAFGRALARARGRYRGTQQAENGAATPPFLPSPSATR-----------TPPQPSPQQRPPPP-RSIGATQRWHSRHHSQPTPEDRENEGPTEVQQDRPLLHPPVPIAAPTKPVVHSPRSAASKADSSPARATGRTSAINT---------PEKILSHAIHHSTSPAKRGLRGGSGP----------RASVLGGAGEGTTRPGDGHGRPR---PPWRSQEEGFREL------------SSGXXXXXXXXXXVEGREASSSSPPSLPEKGEELPSXXXXXX------XXXXXXXXXPAWTPRNSLDLLALAPEATGDTAWAQQAMPPPSE--APYNRAKSMVEASTNTS 919
BLAST of mRNA_L-elsbetiae_contig1445.3281.1 vs. uniprot
Match: A0A6H5KM75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM75_9PHAE) HSP 1 Score: 404 bits (1038), Expect = 8.130e-117 Identity = 355/824 (43.08%), Postives = 418/824 (50.73%), Query Frame = 1
Query: 1 RPHPTLAVADSDRTLILQRH---GRCNTSSKRSAYFADSDTSSACGEHIPAA--REVKPASRTPATA-----ATATTPSGGSSRTGGRWILEGIRRSQQGQTRETPTIRDEQ-----DRASVFYGSVRFPASRVALWNRRPTGSPVVLTPESAAPILVLREQVVDLIASEL-SLAAEEVRGSAGAGDWGLRWHGVLGSAGDILQ--DCASDPRLAAXXXXXXXXXXXXXXXLALEIVGMGAGXAVGXXXXXXXXXXXXXXXXXXKAVPLSGRRRRAETVQGRAVAVTGAMSVEGXXXXXXXSTGPARWQSEGAPLRRAILDDRKRSIEGAKSADPAVFTPLRLQCSLKKRGGXXXXXXXXXXSCSVSGDNGKDPPPRSPHRIADNSA-AGAQRGRQACLRGASMLSLRGEMVVPALGVRLTPIAAPALLHTALFQSLLTRGAEAKLQSGLVTLNEGRRAVLLADNDPLSLRAHIVGVWVSGGXXXXXXXXXXXXXH---SARPSSPLGHPHAYPACLRFLLGFRGGXXXXXXXXXXXXXXXXXXASPSAFLVLHLPGGVGGGTPACFEACALHAGGTAARTAAAAGGAGLVSVSSVGFEQLDFSADVDVEVGRSDKGRERRGGXXXXXXXXXXXXXTNRTVVIGRLRRVSNLSAAGGAFGRALARERGRTRAAQPATSGGAAPPYLPAPSXXXXXXXXXXXXXSTPPPRSSQQPPLVVGRYHGANNRWHGRCQTAAAAVGEEEDGGPPAQ-DRPR-SPPAPMAALTKPMSHNPPVARQQQQRLPAGTNGTGTVTSTGGTPGVTHIPEALRPHVTHHSTSPTKPG 2400
RPHPTLAV DS+RTLILQR G+ + S+YFA + S E + + R+ + + +TA ++ GGSSRT GRWILEGIR S+ GQ + R++ A+VFYGSVRFPASRVALWNRRPTGSP+ LTPESAAP+LVLR++ DLIASEL S AAE G RWHGVLGS GDILQ ASDPRL A LALEI GM AG A XXXXXXXXXX R VA++GA S G A + A ++LDD + + AKSADP+ FTPLRLQCSLK V G+ P R+ HR A SA G+ G+ A +GA+ LSLR E++ PALGVRLTPIAAPALLHTAL+QSLL+RGAE KLQSGLVTLNEGRRAVLL+D+DPLSLRA IVGVWVSGG S R SSPL HP+ YPACLRFL+GFRG XXXXXXXXXXXX SP AFLVL LPGGVGGGT G + R RGG + + +R N R R Q A +G APP++P+PS P P+ PP +G A RWH R E +G Q DRP PP P+AA TKP+ H+P A + PA +TG T + + PE + H HHSTSP K G
Sbjct: 4 RPHPTLAVTDSERTLILQRRNNSGKPRVKRRVSSYFAAEEASDTSAESLASCSRRDGRTGTACISTADKNKEISSLASGGGSSRTAGRWILEGIRHSRHGQKLQPAKDRNDSVIGPAADAAVFYGSVRFPASRVALWNRRPTGSPLTLTPESAAPLLVLRQRAADLIASELLSFAAE-----------GERWHGVLGSTGDILQGSSLASDPRLLAASSSFSSNAPFSC--LALEIAGMKAGEAAPXXXXXXXXXXGDTGEMRPSXXXXXXXXXRGRRC---VVALSGAAS--SGEGEGRCGRGTAEGNDDEA-YYSSLLDDCIKRVGAAKSADPSTFTPLRLQCSLK------------GLDNGVHGETS--PSARNQHRQAGGSANGGSGAGQPAPRQGAATLSLRAEIIAPALGVRLTPIAAPALLHTALYQSLLSRGAEDKLQSGLVTLNEGRRAVLLSDSDPLSLRAPIVGVWVSGGDSGSTGGVGTPSGQQQQSGRRSSPLTHPYVYPACLRFLIGFRGAGGTSKSXXXXXXXXXXXXXSPVAFLVLQLPGGVGGGTXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXRGCRRGHAGVLRGVRGGMCQRQIMTASVVRGFTRLAVDGMRAAHNAGLTNSLSD--------RYRGTQQAENGATAPPFVPSPSATRMPLQ--------PSPQQRPPPPRAIG----ATQRWHSRYHNQPTPEDRENEGPTEMQQDRPLLHPPVPIAAPTKPVVHSPRSAASKADSPPA--------RATGHTSAI-NSPEKILSHAIHHSTSPAKRG 755
BLAST of mRNA_L-elsbetiae_contig1445.3281.1 vs. uniprot
Match: UPI000A1C1CC1 (SCL-interrupting locus protein n=1 Tax=Boleophthalmus pectinirostris TaxID=150288 RepID=UPI000A1C1CC1) HSP 1 Score: 58.5 bits (140), Expect = 9.820e-5 Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 1159 SLRGEMVVPALGVRLTPIAAPALLHTALFQSLLT--RGAEAKLQSGLVTLNEGRRAVLLADNDPLSLRAHIVGVWVSG 1386
SL V PA GV + P+ A ++ TAL +SL + R A Q G VT+++GR+ +LL ++DP +L +VGVW SG
Sbjct: 195 SLTWSCVSPATGVHVEPVRAAHVIPTALLRSLTSPARPAATSRQKGFVTMDQGRKLLLLLESDPKALSLPLVGVWFSG 272 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1445.3281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1445.3281.1 >prot_L-elsbetiae_contig1445.3281.1 ID=prot_L-elsbetiae_contig1445.3281.1|Name=mRNA_L-elsbetiae_contig1445.3281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1003bp MGAGGAVGAAVAQQKQQQEEEAAAAGKAVPLSGRRRRAETVQGRAVAVTGback to top mRNA from alignment at L-elsbetiae_contig1445:12870..20280- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1445.3281.1 ID=mRNA_L-elsbetiae_contig1445.3281.1|Name=mRNA_L-elsbetiae_contig1445.3281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7411bp|location=Sequence derived from alignment at L-elsbetiae_contig1445:12870..20280- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1445:12870..20280- >mRNA_L-elsbetiae_contig1445.3281.1 ID=mRNA_L-elsbetiae_contig1445.3281.1|Name=mRNA_L-elsbetiae_contig1445.3281.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6018bp|location=Sequence derived from alignment at L-elsbetiae_contig1445:12870..20280- (Laminarionema elsbetiae ELsaHSoW15)back to top |