mRNA_L-elsbetiae_contig14379.3233.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14379.3233.1
Unique NamemRNA_L-elsbetiae_contig14379.3233.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: A0A6H5KSD8_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD8_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 9.110e-94
Identity = 156/289 (53.98%), Postives = 196/289 (67.82%), Query Frame = 1
Query:    4 EVFYLWLLIKKGATPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKSDYPVAVAFDQYYDKFIEQGWKQTHTNVITQKLKLLRGVQTRLHAEVCRTLSQLGISVPDGFDISDSELRRAHTRQFIDEQKEVDIATVDAALKIFTTEQRHIFDEVLDACNKPGGALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPVPDPRDDSVLQSDLAGGKREQVMANTKLCTIDEISSLHIA 870
            + FYLWLL+K+GATPRSF DA  ++G EH T+KDA  AAGHLD+PL+ EA +AL+EAV  +A+P++LRRLF+ LV+SD+PVA AFDQYY   IE+ WKQ H+NVI QKL+L R +Q RL  E CR LS LGI VP GFD+++S+L+   +R   D                                     ALFDI+GRAGC KT+   A+GAQ RL+G LTAP+A TG AALNQTFGL FHRTFD+PV DPRDD+VLQS L  GKR ++MANT++C  ++   LH A
Sbjct:   25 DTFYLWLLLKRGATPRSFEDALTINGFEHATFKDAVTAAGHLDDPLLNEAAFALQEAVDSYATPERLRRLFILLVRSDFPVATAFDQYYTNMIEESWKQEHSNVIAQKLQLQRDLQRRLVTEGCRHLSHLGIDVPKGFDLTNSDLQHERSRTGKD-------------------------------------ALFDIRGRAGCGKTV---AIGAQTRLDGFLTAPSASTGFAALNQTFGLTFHRTFDVPVSDPRDDTVLQSKLKTGKRAELMANTRMCKHEQF--LHFA 271          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: A0A6H5K6D5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6D5_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 9.540e-88
Identity = 136/204 (66.67%), Postives = 168/204 (82.35%), Query Frame = 1
Query:  280 IEQGWKQTHTNVITQKLKLLRGVQTRLHAEVCRTLSQLGISVPDGFDISDSELRRAHTRQFIDEQKEVDIATVDAALKIFTTEQRHIFDEVLDACNKPGGALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPVPDPRDDSVLQSDLAGGKREQVMANTKLCTIDEISSLHIAAFEAAAR 891
            IE+ WKQ H+NVI Q L+L R +Q RL  E CR LS LGI+VP+GFD+++S+L+R  +RQF++ QK+ DI TV +AL +FTTEQR IF+++LDAC     ALFDI+GRAGC KT+LL A+GAQ RL+G LTAP+A TG AALNQTFGL FHRTFD+PVPDPRDD+VLQS L  GKR ++MANT++CTIDEISSLH+AAFEAAAR
Sbjct:    2 IEESWKQEHSNVIAQTLQLQRDLQRRLVTEGCRHLSHLGINVPEGFDLTNSDLQRERSRQFLN-QKQADIDTVSSALHMFTTEQRFIFEKILDACRTGKDALFDIRGRAGCGKTVLLNAIGAQTRLDGLLTAPSASTGFAALNQTFGLTFHRTFDVPVPDPRDDTVLQSKLKTGKRAELMANTRMCTIDEISSLHVAAFEAAAR 204          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: D7FZD4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD4_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 7.860e-62
Identity = 107/231 (46.32%), Postives = 153/231 (66.23%), Query Frame = 1
Query:    1 GEVFYLWLLIKKGA-TPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKSDYPVAVAFDQYYDKFIEQGWKQTHTNVITQKLKLLRGVQTRLHAEVCRTLSQLGISVPDGFDISDSELRRAHTRQFIDEQKEVDIATVDAALKIFTTEQRHIFDEVLDACNKPGGALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACT 690
            G+V+YLWLL+K+G  TPRSF +AR      ++++KD   A G LD+PL  E++  L+EA++ +ASP+QLR LF+ LV    PVA AFD Y+   +E  W + H +   + LKLL+ +Q  L AE C+++  LG++VP+GF + DSEL+RA   Q +D  ++ D+ TV   L +FT EQR +FD +++AC       FDI+GRAG  KT+L+ A+ AQ RLN HLTAP A T
Sbjct:   39 GDVWYLWLLLKRGGCTPRSFLEARTHRDTTYESFKDTCRARGLLDDPLTQESSLCLQEAIENNASPRQLRSLFILLVVGAKPVAAAFDTYHTHMMEPAWIENHPSETARLLKLLQCLQRHLLAEGCKSVQHLGLNVPEGFVLEDSELQRARVAQLLD-HRDKDVDTVLRELAMFTDEQRLVFDTIVNACQSDEAYTFDIKGRAGTGKTVLMNAISAQVRLNNHLTAPAAST 268          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: A0A4Y9ZSQ4_9AGAM (ATP-dependent DNA helicase n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSQ4_9AGAM)

HSP 1 Score: 102 bits (254), Expect = 1.450e-20
Identity = 87/287 (30.31%), Postives = 138/287 (48.08%), Query Frame = 1
Query:    1 GEVFYLWLLIKKGATPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKSDYPVAVAFDQYYDKFIEQGWKQTHTNVITQKLKLLRGVQTRLHAEVCRTLSQLGISVPDGFDISDSELRRAHTRQFIDEQKEVDIATVDAALKI--FTTEQRHIFDEVLDACNKPGGALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPVPDPRDDSVLQSDLAGGK--REQVMANTKLCTIDE 849
            GEVFYL +++++ +  R++ DAR V+GV HDTY++AA+  G+L+     E   A EEA+Q   +P QLR LF  L+    P    ++ ++   + Q + QT +  +     LL  +      E  ++L+  G+  P       +E  R  TR+        D   V AA ++     EQRHI+D ++ A       +  +Q RAG  KT +++ L    R  G +  PTA T LAA   T G   H  + +PV    ++S L     G +  R  ++    L  +DE
Sbjct:  752 GEVFYLRVILQRRSA-RNWVDARTVNGVIHDTYQEAAIELGYLNET--NEGYLAFEEAIQSLRTPGQLRFLFTELISDGTPALPIWNAFH-AHLAQDFAQTMSLDLAMNEVLL--IVAAALDERGQSLADFGLPCP-------TEHSREVTRELQRWSVFQDGYRVSAAARVASMNLEQRHIYDRIMTAVKNDQPLVLFMQARAGRGKTYIIDTLCQVLRAEGRIVLPTATTALAAGIYTGGRTAHSLYRVPV---EENSTLLKSTVGMRSARADLLRQADLHILDE 1022          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: A0A8H6NZP8_9EURO (ATP-dependent DNA helicase n=1 Tax=Aspergillus hiratsukae TaxID=1194566 RepID=A0A8H6NZP8_9EURO)

HSP 1 Score: 95.9 bits (237), Expect = 2.060e-18
Identity = 88/300 (29.33%), Postives = 140/300 (46.67%), Query Frame = 1
Query:    4 EVFYLWLLIKKGATPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKS-DYPVAVAFDQYYDKFIEQGWKQTHTNVITQKLKLLRGVQTRLHAEVCRTLSQLGISVPD----GFDISDSELRRAHTRQFIDEQKEVDIATVDAALKIFTTEQRHIFDEVLDACNKPGGALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPVPDPRDDSVLQSDLA-GGKREQVMANTKLCTIDEISSLHIAAFEAA 885
            E FYL  L++      SF+D R V G  ++TY +AA A G   +  ++EA YA+ EA+  ++ P QLR LF +L++   +P    + ++            HT+  T     L  +   L ++   +L+Q G+  P     G ++ D EL   H  + +        A  DAA      +QR IF+ +L   ++   A F + GRAG  KT L+ AL  Q R +G +   T  T L+ ++   G   H  F IPV D   D  L+S ++  G R +++   +L   +E+     A  E A
Sbjct:  354 EQFYLRALLQVRPAS-SFQDLRTVHGHCYETYHEAATALGLFQD--VSEAEYAISEAIAAYSRPSQLRFLFAYLLRDLPFPAMQLWTRFQRDLCADYGLHHHTDDATNLA--LEDIARYLSSQGS-SLTQCGLPEPQRHQYGSEV-DLELNFFHPHRAVLR------ARADAARTRMNADQRCIFERILGHQDRHSAACFFVDGRAGRGKTFLMAALCDQVRADGGIVCVTGTTALSVIHYERGRTAHSAFGIPVQD--SDEGLESKISLYGARAELIRRAQLIIWEELPMAKKAVLECA 638          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: D0NDZ2_PHYIT (ATP-dependent DNA helicase n=2 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NDZ2_PHYIT)

HSP 1 Score: 90.5 bits (223), Expect = 1.730e-16
Identity = 90/320 (28.12%), Postives = 149/320 (46.56%), Query Frame = 1
Query:    4 EVFYLWLLIKKGATPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKSDYP--VAVAFDQY-------YDKFIEQGWKQTHTNVITQKLKL-------LRGVQTRLHAEVCRTLSQLGISVPDGFDISDSELRRAHTRQFIDEQKEVDIATVDAALKI------FTTEQRHIFDEVLDACNKPGGA--LFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPVPDPRDDSVLQSDLAGGKREQVMANTKLCTIDEISSLHIAAFEAAAR 891
            E FYL LL+    +P+SF D R VDG EH TY+ AA+A G+L+N    E  + L EA +    P QLR+LF  ++    P      +D++       Y + IE      H NV  ++++L       L+ +   L +   ++L   G+ +   +D   +++    +      Q+E+D   ++    +        + QR IFD+V+ A ++P G   LF + G  G  K+ LLE + A  R+   +    A +G+AA   T G   H TF IP+      +   S     ++ +++ +  L   DE   ++ A FEA  R
Sbjct: 1265 ERFYLRLLLCNRRSPKSFADLRTVDGTEHPTYQQAALALGYLEND--DEWIHCLREAAEVKM-PYQLRQLFGIILVYSMPGNAKDLWDRFKKDMSEDYARSIEVRDADLH-NVREEEVRLRMAEYKSLKNLADYLVSNQ-KSLDMYGLPLLADYDDVSAQVDDPDSESVDVVQQEIDAYPLNELEHVAEQADHLNSNQRDIFDQVIAAVSRPVGGEKLFFLDGPGGTGKSFLLEQILAHVRMQRKVAIAVASSGIAATLLTGGHTAHSTFRIPLKLTETSTCSLS--WQSQKAELIRSASLIIWDEAPMMNRACFEAVDR 1577          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: UPI000CED6B74 (uncharacterized protein LOC112088061 n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED6B74)

HSP 1 Score: 90.1 bits (222), Expect = 2.130e-16
Identity = 82/273 (30.04%), Postives = 125/273 (45.79%), Query Frame = 1
Query:    1 GEVFYLWLLIKKGATPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKSDYPVAVAFDQYYDKFIEQGWKQTHTNVITQKLKLLRGVQTRLHAEVCRTLSQLGIS---------------VPDGFDIS----DSEL---RRAHTRQFIDEQKEVDIATVDAALKIFTTEQRHIFDEVLDACNKPGGALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPV 753
            GE +YL LL+     PRSF D + V+ V H ++KDA  A G L++    E   A+ EA     S   LRRLFV L+ + + +++       +  +  W+    ++I    K  R     L  E  +  + + I                +P   DI+    DS L    R + R+ +  + E  +ATV       T+EQR+++DE+L+A NK  G +F + G  G  KT L   LG+  R  G +    A +G+AAL    G   H  F IP+
Sbjct:  628 GEAYYLRLLLNLVKGPRSFDDIKTVNKVLHSSFKDACYAYGLLNDDK--EYIEAINEA-GLWLSVNYLRRLFVILLTT-HSISIP-----SRVWDATWQVLSDDIIYNYRKAARDQTVSLSQEQVKDFTLVEIELLLRVSGRSLKEFTPIPFPEDITLESRDSPLIRDERNYNRETLRVRNEQMLATV-------TSEQRNVYDEILEAVNKNKGGMFFVYGSGGTGKTYLWSLLGSALRSQGDVVLKVASSGIAALLLEGGRTAHSRFTIPI 884          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: A0A177U0A8_9BASI (ATP-dependent DNA helicase (Fragment) n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U0A8_9BASI)

HSP 1 Score: 89.4 bits (220), Expect = 3.990e-16
Identity = 91/307 (29.64%), Postives = 134/307 (43.65%), Query Frame = 1
Query:    1 GEVFYLWLLIKKGATPRSFRDARIVD-GVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKSDYPVAVAFDQYYDKFIEQGWKQTHTNVITQKLKLLRGVQTRLHAEVCRTLSQLGISVPDGFDISDSELRRAHTRQFIDEQKEVDIAT-----VDAALKIFTTEQRHIFDEVLDACNKPGG-ALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPVPDP--RDDSVLQSDL-AGGKREQVMANTKLCTIDEISSLHIAAFEAAAR 891
            G  +Y+  ++      RS+ D R    G  H T+++AA A G +D     E +  ++EAV  H SP  LR LF  L     P A  ++ +   F        H       L + +  Q+ L+  +   L+  G+S       +   L  AH R   DE ++   A        AA + F  +Q+ I+ +VL +   P    L  IQGRAG  KT LL+A+    R +GHL      TGL+A     G   H+ F IPV +     ++VLQS + A     + +       IDE+ SL  A  EA  R
Sbjct:  676 GNAYYIRQILLHRPV-RSWLDMRTDSTGTVHSTFREAAQADGIIDGN--DEYSNVVQEAVDMHNSPANLRFLFALLTHEGAPAAKLWESFRQNFSRDYLPYNHDYDSAPTLAIEQAFQSCLNT-IDEILASFGLSN------TAVGLPPAHERPAADESEQEHFAPKRQALAAAAFQQFNDQQKQIYTDVLQSILSPSPHTLHLIQGRAGRGKTFLLQAIINNLRGHGHLLIICGATGLSAATFDSGTTVHKRFAIPVIEQGTETEAVLQSTMRANSPNARFIRAATAIVIDELWSLPRAVIEAVDR 972          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: A0A060SG11_PYCCI (ATP-dependent DNA helicase n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SG11_PYCCI)

HSP 1 Score: 88.6 bits (218), Expect = 7.430e-16
Identity = 78/255 (30.59%), Postives = 122/255 (47.84%), Query Frame = 1
Query:    1 GEVFYLWLLIKKGATPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKSDY---PVAVAFDQYYDKFIEQGWKQTHTNVITQKLKLLRGVQTRLHAEVCRTLSQLGISVPDGFDIS-DSELRRAHTRQFIDEQKEVDIATVDAALKIFTTEQRHIFDEVLDACNKPGGALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPV 753
            GE F+L  L++  A   SF D R VDGV+HDT++DAA A G   +    E   ++ EA+   ++P+QLR LFV L+ ++    P AV +D+Y +   +     +H  V    +         L  E  ++L++ G+  P  +    + ELRR   ++ +   +E      +AAL  F  EQR IFD+V+ A  +       + G+AG  KT L+  +    R    +   TA +  AA     G   H  F +PV
Sbjct:  501 GERFFLRALLQHRAA-NSFLDLRTVDGVQHDTFQDAANALGLFAHD--NEGELSVLEAITTLSTPRQLRTLFVHLLHNECIPTPRAV-WDKYVNDLSKDHIIASH-GVEAIGVSAALDELAHLLEEYGKSLAEYGLPEPTHYSPEIEHELRRWEAQRSLMLHRE------EAALNDFNAEQRSIFDQVVAAVERGQSLQLFVDGKAGRGKTFLVNTICDHFRARNSIVIATATSAYAAQLYPGGRTTHSAFKVPV 744          
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Match: A0A225UJL7_9STRA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UJL7_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 9.830e-16
Identity = 88/319 (27.59%), Postives = 141/319 (44.20%), Query Frame = 1
Query:    4 EVFYLWLLIKKGATPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITEATYALEEAVQCHASPKQLRRLFVFLVKSDYP--VAVAFDQYYDKFIEQGWKQT-----HTNVITQKLKLLRGVQTRLHAEVC-------RTLSQLGI-------SVPDGFDISDSELRRAHTRQFIDEQKEVDIATVDAALKIFTTEQRHIFDEVLDACNKP--GGALFDIQGRAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIPVPDPRDDSVLQSDLAGGKREQVMANTKLCTIDEISSLHIAAFEAAAR 891
            E FYL +L+    +P+SF D R ++GV H+T+ DAA+AAG+L++    E    L EAV     P  LR+LF  ++    P   +  +D++   F E  +K       H N+   +   LR  + +    V        +TL   G+        V +  +  D++ R     +    + E D+A   A        Q+ +FD+V++A N P  G  LF + G  G  K  L E + A  RL   +    A +G+AA         + TF+IP+      +   S     ++ +++ N  L   DE   +H A FEA  R
Sbjct:   21 ERFYLRILLCHRRSPKSFEDIRTINGVVHETFHDAALAAGYLEDDREWEE--CLAEAVS-FKMPYALRQLFGTILVYSLPDHASALWDRFKKDFSEDYFKSIAERDRHNNIERDEEVRLRMAEYKCLKWVAEYLLSNGKTLDMYGLPELSTYQDVSEEVEREDTDPRDVVANEIATYEPE-DLARTTALADQMNENQKEVFDQVIEAVNHPVDGQKLFFVDGPGGTGKPFLHEQMLAHVRLQKKVAIAVASSGIAATRP------YCTFNIPLKFSEISTC--SHPWQSQKAELIRNASLIIWDEAPMMHRACFEAVDR 327          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14379.3233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSD8_9PHAE9.110e-9453.98ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K6D5_9PHAE9.540e-8866.67ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7FZD4_ECTSI7.860e-6246.32ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A4Y9ZSQ4_9AGAM1.450e-2030.31ATP-dependent DNA helicase n=1 Tax=Hericium alpest... [more]
A0A8H6NZP8_9EURO2.060e-1829.33ATP-dependent DNA helicase n=1 Tax=Aspergillus hir... [more]
D0NDZ2_PHYIT1.730e-1628.13ATP-dependent DNA helicase n=2 Tax=Phytophthora in... [more]
UPI000CED6B742.130e-1630.04uncharacterized protein LOC112088061 n=1 Tax=Eutre... [more]
A0A177U0A8_9BASI3.990e-1629.64ATP-dependent DNA helicase (Fragment) n=2 Tax=Till... [more]
A0A060SG11_PYCCI7.430e-1630.59ATP-dependent DNA helicase n=1 Tax=Pycnoporus cinn... [more]
A0A225UJL7_9STRA9.830e-1627.59ATP-dependent DNA helicase (Fragment) n=1 Tax=Phyt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14379contigL-elsbetiae_contig14379:3591..4481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.5
Seed ortholog evalue2.1e-51
Seed eggNOG ortholog2880.D7FZD4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size891
Cds size891
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.010109-CDS-L-elsbetiae_contig14379:3590..44811622815575.010109-CDS-L-elsbetiae_contig14379:3590..4481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14379 3591..4481 +
1691682968.4285102-CDS-L-elsbetiae_contig14379:3590..44811691682968.4285102-CDS-L-elsbetiae_contig14379:3590..4481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14379 3591..4481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14379.3233.1prot_L-elsbetiae_contig14379.3233.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14379 3591..4481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14379.3233.1

>prot_L-elsbetiae_contig14379.3233.1 ID=prot_L-elsbetiae_contig14379.3233.1|Name=mRNA_L-elsbetiae_contig14379.3233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=297bp
GEVFYLWLLIKKGATPRSFRDARIVDGVEHDTYKDAAVAAGHLDNPLITE
ATYALEEAVQCHASPKQLRRLFVFLVKSDYPVAVAFDQYYDKFIEQGWKQ
THTNVITQKLKLLRGVQTRLHAEVCRTLSQLGISVPDGFDISDSELRRAH
TRQFIDEQKEVDIATVDAALKIFTTEQRHIFDEVLDACNKPGGALFDIQG
RAGCRKTLLLEALGAQARLNGHLTAPTACTGLAALNQTFGLIFHRTFDIP
VPDPRDDSVLQSDLAGGKREQVMANTKLCTIDEISSLHIAAFEAAAR
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mRNA from alignment at L-elsbetiae_contig14379:3591..4481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14379.3233.1 ID=mRNA_L-elsbetiae_contig14379.3233.1|Name=mRNA_L-elsbetiae_contig14379.3233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=891bp|location=Sequence derived from alignment at L-elsbetiae_contig14379:3591..4481+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGGTGTTCTACTTGTGGCTCCTGATTAAAAAGGGCGCCACCCCTCG GTCCTTCCGGGACGCCCGCATTGTCGACGGCGTGGAGCACGACACGTATA AAGATGCGGCTGTCGCTGCCGGGCATCTCGACAACCCTCTTATCACAGAA GCGACATACGCCTTGGAAGAAGCTGTACAATGCCATGCTTCACCCAAGCA ACTACGACGACTATTCGTGTTCCTCGTCAAAAGTGACTATCCCGTTGCTG TAGCTTTCGACCAGTACTACGACAAGTTCATAGAACAGGGATGGAAACAG ACCCACACTAACGTCATCACCCAGAAGTTGAAGCTCTTACGTGGCGTGCA GACACGTTTGCATGCTGAGGTATGCAGGACTCTCTCTCAGCTTGGGATCA GTGTACCCGACGGCTTCGATATCTCGGATTCTGAACTGAGGCGTGCCCAT ACGAGGCAATTCATCGACGAACAGAAGGAGGTAGACATCGCCACCGTCGA CGCAGCGTTGAAGATATTCACGACCGAGCAACGTCATATTTTCGATGAGG TATTGGATGCATGCAACAAGCCAGGTGGAGCGCTTTTCGACATACAAGGG CGTGCTGGATGTAGGAAGACCCTACTGCTAGAAGCGCTCGGTGCTCAGGC GCGTTTGAACGGTCATCTTACGGCTCCCACGGCGTGCACCGGTTTGGCAG CTTTAAACCAGACATTCGGCCTTATTTTCCATCGAACATTCGATATACCA GTTCCTGATCCCCGGGACGACTCAGTGCTACAGTCCGACCTCGCCGGAGG CAAACGGGAGCAGGTCATGGCCAACACAAAACTATGCACCATCGATGAGA TATCATCACTTCATATCGCGGCCTTCGAAGCTGCTGCACGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14379:3591..4481+

>mRNA_L-elsbetiae_contig14379.3233.1 ID=mRNA_L-elsbetiae_contig14379.3233.1|Name=mRNA_L-elsbetiae_contig14379.3233.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig14379:3591..4481+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGAGGTGTTCTACTTGTGGCTCCTGATTAAAAAGGGCGCCACCCCTCG
GTCCTTCCGGGACGCCCGCATTGTCGACGGCGTGGAGCACGACACGTATA
AAGATGCGGCTGTCGCTGCCGGGCATCTCGACAACCCTCTTATCACAGAA
GCGACATACGCCTTGGAAGAAGCTGTACAATGCCATGCTTCACCCAAGCA
ACTACGACGACTATTCGTGTTCCTCGTCAAAAGTGACTATCCCGTTGCTG
TAGCTTTCGACCAGTACTACGACAAGTTCATAGAACAGGGATGGAAACAG
ACCCACACTAACGTCATCACCCAGAAGTTGAAGCTCTTACGTGGCGTGCA
GACACGTTTGCATGCTGAGGTATGCAGGACTCTCTCTCAGCTTGGGATCA
GTGTACCCGACGGCTTCGATATCTCGGATTCTGAACTGAGGCGTGCCCAT
ACGAGGCAATTCATCGACGAACAGAAGGAGGTAGACATCGCCACCGTCGA
CGCAGCGTTGAAGATATTCACGACCGAGCAACGTCATATTTTCGATGAGG
TATTGGATGCATGCAACAAGCCAGGTGGAGCGCTTTTCGACATACAAGGG
CGTGCTGGATGTAGGAAGACCCTACTGCTAGAAGCGCTCGGTGCTCAGGC
GCGTTTGAACGGTCATCTTACGGCTCCCACGGCGTGCACCGGTTTGGCAG
CTTTAAACCAGACATTCGGCCTTATTTTCCATCGAACATTCGATATACCA
GTTCCTGATCCCCGGGACGACTCAGTGCTACAGTCCGACCTCGCCGGAGG
CAAACGGGAGCAGGTCATGGCCAACACAAAACTATGCACCATCGATGAGA
TATCATCACTTCATATCGCGGCCTTCGAAGCTGCTGCACGTGGCGAGGTG
TTCTACTTGTGGCTCCTGATTAAAAAGGGCGCCACCCCTCGGTCCTTCCG
GGACGCCCGCATTGTCGACGGCGTGGAGCACGACACGTATAAAGATGCGG
CTGTCGCTGCCGGGCATCTCGACAACCCTCTTATCACAGAAGCGACATAC
GCCTTGGAAGAAGCTGTACAATGCCATGCTTCACCCAAGCAACTACGACG
ACTATTCGTGTTCCTCGTCAAAAGTGACTATCCCGTTGCTGTAGCTTTCG
ACCAGTACTACGACAAGTTCATAGAACAGGGATGGAAACAGACCCACACT
AACGTCATCACCCAGAAGTTGAAGCTCTTACGTGGCGTGCAGACACGTTT
GCATGCTGAGGTATGCAGGACTCTCTCTCAGCTTGGGATCAGTGTACCCG
ACGGCTTCGATATCTCGGATTCTGAACTGAGGCGTGCCCATACGAGGCAA
TTCATCGACGAACAGAAGGAGGTAGACATCGCCACCGTCGACGCAGCGTT
GAAGATATTCACGACCGAGCAACGTCATATTTTCGATGAGGTATTGGATG
CATGCAACAAGCCAGGTGGAGCGCTTTTCGACATACAAGGGCGTGCTGGA
TGTAGGAAGACCCTACTGCTAGAAGCGCTCGGTGCTCAGGCGCGTTTGAA
CGGTCATCTTACGGCTCCCACGGCGTGCACCGGTTTGGCAGCTTTAAACC
AGACATTCGGCCTTATTTTCCATCGAACATTCGATATACCAGTTCCTGAT
CCCCGGGACGACTCAGTGCTACAGTCCGACCTCGCCGGAGGCAAACGGGA
GCAGGTCATGGCCAACACAAAACTATGCACCATCGATGAGATATCATCAC
TTCATATCGCGGCCTTCGAAGCTGCTGCACGT
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