mRNA_L-elsbetiae_contig1437.3227.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1437.3227.1
Unique NamemRNA_L-elsbetiae_contig1437.3227.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 2.460e-49
Identity = 137/293 (46.76%), Postives = 177/293 (60.41%), Query Frame = 2
Query:  617 LNTGTW---MHAIKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMP-MRITPLDLTNSYLF--TKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKKP 1477
            L T  W   + A ++LL A A+PLL      S     ++F+PLDAAAE GH EV  ELI+++GI+GCGG+SGGV AL  A   +    M +LT+AGVVDTG AL VA   G    +K LL+Q  RA      AA+VN+    G   L   + +      R++RLLV+AGADT S V + +  G   + ITPL LT + +    KV+    A+ EQLH LEAIRRLLLRVEA HAVSWLW SDIS++T AAA  GT +  A ST +   + + R+RA   +V LAAL R + KP
Sbjct:  152 LYTAAWKGNVDAARLLLLAKADPLLTTVPDPSG----RTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQ-ARARKTMDEAAYVNTRDRGGVTPLLWGIQHY---RPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAA-RGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.080e-41
Identity = 122/279 (43.73%), Postives = 157/279 (56.27%), Query Frame = 2
Query:  644 IKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITS-PFGMPMRITPLDLTNSYLFTKVIR-GNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKK 1474
            ++ LLR  ANPLL     TS PG   + VPLD AA+ GH +V RELIQELGIEGC   S G  AL+ A ++Q  + M +LT AGVVDTG AL +A   G   SVK LL+   +    G   A++N+  ++G   L          + RI+R+LVDAGADT S VQ+ +   G+    TPL  T   L  K++  G  AT+E L  LEAI RLLLRV+A HAVSWLW S    +  A   +      A    L  +LPIL++R  R   L+A L R + K
Sbjct:  256 MRELLRGNANPLL---IQTSPPGN-TTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLPA----LKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.780e-41
Identity = 128/300 (42.67%), Postives = 170/300 (56.67%), Query Frame = 2
Query:  590 THRRRCTSRLNTGTW---MHAIKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMP-MRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTPLASVLPILRQRAGRSRV-LLAALFRNAKK 1474
            T R    + L T  W   + A+ +LL A A+PLL  +S +      + F+PLD AA+ GH EV  ELI+++GI+GCGG+SGG +AL  A    + + M +LT AGVVDTG AL VA   G    +K LL+Q  R       AA++N+L   G   L   +D       R+++LLV+AGADT S V I +  G     ITPL LT   L  +  +    T E+ + LE IRRLLLR EA HAVSWLW SD  ++THA A +GTG+  A ST     + ++  R  R R  LLAAL R + K
Sbjct:  143 TRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGK----ERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQ-ARGRKSTDRAAYMNTLNGVGLTSL---LDGIQRCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRSAKP--LTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATA-KGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSK 431          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.180e-40
Identity = 116/272 (42.65%), Postives = 146/272 (53.68%), Query Frame = 2
Query:  674 PLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMPMRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACST-----PLASVLPILRQRAGRSRVLLAALFRNAKK 1474
            PLLP   ++ +     +FVPLD AA  GHL VAREL+Q  GI GC GAS GVDAL  A   Q  + M +L  AGVVDTG AL   +  G   ++K LL+Q K   +  ++ A     G    P L       C  S R++RLLVDAGAD   AV++   FG   + TPLD     L  KV+  + AT +QL +L A RRLLL+VE  HA SWLW        HA      GK +A +      PL S LPI+ +R+ R    L  +FR AKK
Sbjct:  170 PLLPTRMSSGN-----TFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQ-KGEGTARTTYASTPRDGRGHTPLLSAVTTGPC--SPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGG------HAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRRSARRGAALPGVFRLAKK 427          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.840e-40
Identity = 126/289 (43.60%), Postives = 165/289 (57.09%), Query Frame = 2
Query:  635 MHAIKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLH-----CAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMPM-RITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAA--AVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKKP 1477
            + A + LLRA ANPL+     T +P +P + +PLD+AA  G+L V RELIQ +GIEGCGG S G  AL  A   ++   M +LT AGVVDTG AL+++   G   SVK+LLQ H +    G   A+VN    +G   L      C VD    S  R+ RLLV+AGADT + ++ T+  G+ +   TPL LT   L  K + G   ++++L  LE IRRLLL+VEA HA SWLW S           A E T    A +  L  VLPILR+RA R  V+  AL R+ +KP
Sbjct:  147 LEATRELLRANANPLI-----TRAP-LP-TLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHAKHYGPG---AYVNVRDRNGTTPLLSSIYVCGVDEQS-SFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 3.610e-40
Identity = 128/283 (45.23%), Postives = 166/283 (58.66%), Query Frame = 2
Query:  650 MLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAG-VVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGIS-GRPHLHCAVDNAC--LSSSRIMRLLVDAGADTYSAVQIT--SPFGMPMRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWAS-DISSVTHAAAVEGTGKAK-ACSTPLASVLPILRQRAGRSRVLLAALFRNAKK 1474
            +LLRA ANPLL      S   +  S+VPL+ AA  G+ +VARE+I+++GI GCGG SGGV+AL  A   +  EFM +L  AG VVDTG AL +A   G AV+VK LL++ +  A      A+VN      GR  + CAVD     L S +I+RLLVDAGA+T  AV +T  +P       TPL  T   L    + G  AT+EQL  L+  R LL R EA HAVSWLWAS +   +  AA    T  A  A +TPL ++ P+LR++ G   VLL  LFR ++K
Sbjct:  163 VLLRAKANPLL-----CSHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADAD-----AYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 3.110e-38
Identity = 103/218 (47.25%), Postives = 129/218 (59.17%), Query Frame = 2
Query:  701 SSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFG-MPMRITPLDLTNSYLFTKVI-RGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAA 1348
            SS G P   VPLD AA  GH  V R L+QELGI+GC   + G  AL  A + +  + + +LT AG VDT  +   ALMC +  S KH L+Q  +   GG   A +N    SG   L  ++      + RI+RLL++AGADT S ++ T+  G +    TPL LT SYL+ K++  G  ATEE L  LEAIRRLLLR EA HAVSWLW SD S V HAA
Sbjct:  164 SSSGFPG--VPLDVAASSGHSGVVRHLVQELGIKGCNPENAGKQALLLAASKRDLDTLAILTGAGAVDTSGS---ALMCAAEASFKHFLRQRLKEEKGGVEYASINDRISSGLTALVFSIQRCLSQTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAA 376          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 3.120e-37
Identity = 119/286 (41.61%), Postives = 153/286 (53.50%), Query Frame = 2
Query:  656 LRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVD-TGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSL-----------GISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMP-MRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKK 1474
            L A ANPLL +SS +S     +SFVPL+ AA+ G   V  EL++E GI  CGG SGG+DAL  A    Q + M ML  AGVVD  G AL  A+  G   +V  LL+Q +         ++VN                G  +  C        + RI R LVDAGADT SAVQ+ +      + +TPL+  N +   +    + AT+EQL  LEA RR+LLRV A HAVSW+W SD   +   A    T  AK   T L +VLP+LR+RAGR  +L   LFR +KK
Sbjct:  138 LHAKANPLLTWSSESSG----RSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQ----TSYVNIARDDDGLTALLWSFRGNKNKPC--------NPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRT--AKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKK 405          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.510e-36
Identity = 106/244 (43.44%), Postives = 134/244 (54.92%), Query Frame = 2
Query:  749 ERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQIT-SPFGMPMRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAA-AVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKK 1474
            + GH EV RELIQ+LG+ GCGG S GV++L  A   Q  + MG+LT  GVVDTG AL VA       SVK LLQ      +GG +    N+L   GR  L C ++    SS RI R L+D GADT S V +T S      R TPL      L    + G  ATEEQL SL+AI RLL ++EA HAVSWLW S  + + HA  A     K       L  +  +LR   G+  V+L A++R A++
Sbjct:  189 QHGHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQ----AGGGTWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMKPTTAGPTLKRMSTVLRTTVGKRGVVLRAVYRAAEE 428          
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 9.780e-35
Identity = 119/281 (42.35%), Postives = 149/281 (53.02%), Query Frame = 2
Query:  659 RAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNS-LGISGRPHLHCAVD----NACLSSSRIMRLLVDAGADTYSAVQIT-SPFGMPMRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTP---LASVLPILRQRAGRSRVLLAALFRNAKK 1474
            RA ANPLL      +   +    +PLD AA+ G L V  EL+Q  GI GCGG +GGV AL  A      + M  LT+AGVVDTG AL  A   G    VK LLQQ     S    +A+V+      GR  L C +D     +C  S +++RLLVDAGADT S V+ T  P  +P+  TPL L    L  K+       +E L  LE IRRLLLRVEA HA SWLW + +  V   A      + ++ ST    L +VLPILR+RA     + A+L R A K
Sbjct:  168 RAKANPLL------TRVNLAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGTPS--EKSAYVSRPRDPCGRTPLICNIDVGLNQSC--SPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYAVK 438          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJA9_9PHAE2.460e-4946.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT11_ECTSI2.080e-4143.73EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KQV0_9PHAE3.780e-4142.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL76_ECTSI1.180e-4042.65EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJF9_ECTSI2.840e-4043.60EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1H7_ECTSI3.610e-4045.23EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D7FVU0_ECTSI3.110e-3847.25EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVU3_ECTSI3.120e-3741.61EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1U9_ECTSI1.510e-3643.44EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVK3_ECTSI9.780e-3542.35EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1437contigL-elsbetiae_contig1437:16409..18776 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue1.2e-40
Seed eggNOG ortholog2880.D7FT11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1765
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1437.3227.1prot_L-elsbetiae_contig1437.3227.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1437 17043..18491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.6341677-UTR-L-elsbetiae_contig1437:16408..170421622815574.6341677-UTR-L-elsbetiae_contig1437:16408..17042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 16409..17042 +
1691682968.2499807-UTR-L-elsbetiae_contig1437:16408..170421691682968.2499807-UTR-L-elsbetiae_contig1437:16408..17042Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 16409..17042 +
1622815574.6794803-UTR-L-elsbetiae_contig1437:18491..187761622815574.6794803-UTR-L-elsbetiae_contig1437:18491..18776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 18492..18776 +
1691682968.284689-UTR-L-elsbetiae_contig1437:18491..187761691682968.284689-UTR-L-elsbetiae_contig1437:18491..18776Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 18492..18776 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.648801-CDS-L-elsbetiae_contig1437:17042..178691622815574.648801-CDS-L-elsbetiae_contig1437:17042..17869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 17043..17869 +
1691682968.2635167-CDS-L-elsbetiae_contig1437:17042..178691691682968.2635167-CDS-L-elsbetiae_contig1437:17042..17869Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 17043..17869 +
1622815574.6651642-CDS-L-elsbetiae_contig1437:18472..184911622815574.6651642-CDS-L-elsbetiae_contig1437:18472..18491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 18473..18491 +
1691682968.2741125-CDS-L-elsbetiae_contig1437:18472..184911691682968.2741125-CDS-L-elsbetiae_contig1437:18472..18491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 18473..18491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1437.3227.1

>prot_L-elsbetiae_contig1437.3227.1 ID=prot_L-elsbetiae_contig1437.3227.1|Name=mRNA_L-elsbetiae_contig1437.3227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=282bp
MHAIKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELI
QELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALM
CGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSS
RIMRLLVDAGADTYSAVQITSPFGMPMRITPLDLTNSYLFTKVIRGNIAT
EEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACS
TPLASVLPILRQRAGRSRVLLAALFRNAKKP*
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mRNA from alignment at L-elsbetiae_contig1437:16409..18776+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1437.3227.1 ID=mRNA_L-elsbetiae_contig1437.3227.1|Name=mRNA_L-elsbetiae_contig1437.3227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2368bp|location=Sequence derived from alignment at L-elsbetiae_contig1437:16409..18776+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTTGACGATCACGGCGAACCGGCACCCCAGCACGTCACCTGATAGACC GGCGGCAACCGTCACCCAGCACGTCACCGGGTAGACCGGCAGCCAGAGCA GGCCAGACAGACCGACGCCGATGCCTCAACTTCCTCACAATGAACTTCAC GCTGCGGCGTTACGTGGCTCCGTCGAGCGCACCTTGGCCGTGCTCGCAAG GGGAGTGGTTGACATCGATGCACCATCCTCGCCTCCTGCAGGAATGGAAC GGCTACAATTACGGCGGAATCGTGATCGTGGCCTGCCTCACGGCTTCACT GCTCTCATGTGGGCCTGCTTCATGGGTAACTCTCGAGTTGCCAGGGTGCT TCTCAATAAAGGAGCCAGCATGTCTGCAGTGAATGGTGACGGTTTTTACG CTGTGCACCTGGCGGTCCAAGAAGGACACCTGGCCGTCGTAAAGCTTCTG CAAAAGGCCGGCGCAGACCTAAACGTCAAGACCACCACGACAGGCTGCAC ACCGCTCAACCTGGCTGCGGAAGAAGGGCACTCGGAGGTGCTGAGGTTGC TGATCGAGGCAGGGGGCAACCCCAACAGCCGTGCAGCCGACTCATCGACG CCGCTGTACATCGCGGCTCAACACGGGCACGTGGATGCATGCGATCAAGA TGCTCCTTCGTGCGGGAGCGAACCCACTGCTGCCCTTTTCGAGTGCGACT TCGAGTCCGGGCATCCCGAAGTCTTTCGTCCCTCTAGATGCGGCCGCGGA GAGAGGACACTTGGAGGTTGCACGCGAGCTGATCCAGGAACTTGGGATAG AAGGATGTGGCGGTGCAAGCGGTGGTGTGGATGCCCTTTCCACTGCCATC GCAAGCCAGCAGTCAGAGTTCATGGGTATGCTGACCAGCGCCGGAGTGGT CGACACAGGCGCAGCCCTGAGCGTCGCCCTCATGTGCGGCAGCGCTGTGT CGGTTAAACACCTGCTGCAGCAGCACAAACGGGCCGCTAGCGGTGGCAGT AGTGCTGCCCACGTGAACTCTCTCGGCATTTCCGGCCGACCTCATTTGCA TTGTGCCGTTGATAATGCCTGCTTGTCTTCGTCCAGGATTATGCGTTTGC TCGTTGATGCTGGAGCAGACACGTATTCGGCTGTTCAAATCACGAGCCCT TTTGGGATGCCCATGAGGATTACACCCCTGGATCTCACGAACAGTTACCT ATTTACGAAGGTCATCAGAGGAAATATCGCCACAGAAGAGCAATTACACA GCCTGGAGGCCATCCGGCGGTTGCTATTGAGGGTAGAGGCAGCTCATGCA GTTTCTTGGCTATGGGCAAGCGACATTTCCTCCGTCACCCACGCTGCTGC TGTAGAGGGCACAGGCAAGGCCAAGGCATGTTCGACCCCGCTGGCATCGG TGTTGCCGATCTTGAGGCAAAGAGCTGGAAGGTCCAGGGTGCTCTTGGCT GCCCTTTTCAGGTGGGTGAAACTTGATGATGTGATAAGTGCGCTAGGTTT TCGCGAGAATCATCCTGCTCGTTGCTCGCGAAAGCTGTGGGGTGGAGATG AAGTCGAAATTTCGATCGGCCCCCTCTCCAGGCTAGTGGGTCAGGTTATC GAGGGTGTACAGACTACATGCGCGGGCTCTCAGGCGCTTCAGGTGAAGTC AAGGTGCCGAGTGGGTTGTTGCAGGTACCGGTAGAGTCCAAGGTGTCGAC TGAGCATTTCCGCTGTTACCGGCAGCGAGCGACGCCTATGAGGGCATGTC TTTGTTGGTGTTCCTGCTGCTGCTGCTTTGATCACTGCTGTCTTGCCTCT GTTGAGAAAGCCACCTGTGGCGTTTTGTCATGCATGCTGTCTTGTGCCCC GCTGTGTGCGGATTTCACCATTTCCAAAATAGGATTTGGCCAGGAGCGAG GACTGTGTGCTGCTGCACTTCGTTCGTCCTCGCTGTTCTTTCACTCTTTA CTTATTTTCAAGGAAGTTATCGCTTTCACAACTTCTGGCGCGCACCCTGC CAAGCTGACGGTTTTGTGTTGACGCGTTTCACTTGTCGTTGCCGGCGCTT TCGTTTTTATACAGGAATGCGAAAAAGCCTTGATCGCGATCTGTTGAGAG GATGTGCAAGCGGTGCTTCGTCGCCCTCTTGTGCTTTGCAGTTGGGTGGA GCGATATATGGGATTGGCAGCAGAAGCAGATGCCGCAGCTCCGCCGGTCT AGCTTTGCAAGATGTCACTCTTGGTGCACGGCGCTGGTTTTTCTATCGGG GCTCAAGATGCAAAGAGCTGCTCCCTGTTCGTTTTTGTTTTTGTTGATTC TACCGTACCTGCTATCCTCGCCGAAAAGCCTCAGATTTTCTTCTTCGGAA CGGCGGCAAGCACTACTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1437:16409..18776+

>mRNA_L-elsbetiae_contig1437.3227.1 ID=mRNA_L-elsbetiae_contig1437.3227.1|Name=mRNA_L-elsbetiae_contig1437.3227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1692bp|location=Sequence derived from alignment at L-elsbetiae_contig1437:16409..18776+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGCGATCAAGATGCTCCTTCGTGCGGGAGCGAACCCACTGCTGCC
CTTTTCGAGTGCGACTTCGAGTCCGGGCATCCCGAAGTCTTTCGTCCCTC
TAGATGCGGCCGCGGAGAGAGGACACTTGGAGGTTGCACGCGAGCTGATC
CAGGAACTTGGGATAGAAGGATGTGGCGGTGCAAGCGGTGGTGTGGATGC
CCTTTCCACTGCCATCGCAAGCCAGCAGTCAGAGTTCATGGGTATGCTGA
CCAGCGCCGGAGTGGTCGACACAGGCGCAGCCCTGAGCGTCGCCCTCATG
TGCGGCAGCGCTGTGTCGGTTAAACACCTGCTGCAGCAGCACAAACGGGC
CGCTAGCGGTGGCAGTAGTGCTGCCCACGTGAACTCTCTCGGCATTTCCG
GCCGACCTCATTTGCATTGTGCCGTTGATAATGCCTGCTTGTCTTCGTCC
AGGATTATGCGTTTGCTCGTTGATGCTGGAGCAGACACGTATTCGGCTGT
TCAAATCACGAGCCCTTTTGGGATGCCCATGAGGATTACACCCCTGGATC
TCACGAACAGTTACCTATTTACGAAGGTCATCAGAGGAAATATCGCCACA
GAAGAGCAATTACACAGCCTGGAGGCCATCCGGCGGTTGCTATTGAGGGT
AGAGGCAGCTCATGCAGTTTCTTGGCTATGGGCAAGCGACATTTCCTCCG
TCACCCACGCTGCTGCTGTAGAGGGCACAGGCAAGGCCAAGGCATGTTCG
ACCCCGCTGGCATCGGTGTTGCCGATCTTGAGGCAAAGAGCTGGAAGGTC
CAGGGTGCTCTTGGCTGCCCTTTTCAGATGCATGCGATCAAGATGCTCCT
TCGTGCGGGAGCGAACCCACTGCTGCCCTTTTCGAGTGCGACTTCGAGTC
CGGGCATCCCGAAGTCTTTCGTCCCTCTAGATGCGGCCGCGGAGAGAGGA
CACTTGGAGGTTGCACGCGAGCTGATCCAGGAACTTGGGATAGAAGGATG
TGGCGGTGCAAGCGGTGGTGTGGATGCCCTTTCCACTGCCATCGCAAGCC
AGCAGTCAGAGTTCATGGGTATGCTGACCAGCGCCGGAGTGGTCGACACA
GGCGCAGCCCTGAGCGTCGCCCTCATGTGCGGCAGCGCTGTGTCGGTTAA
ACACCTGCTGCAGCAGCACAAACGGGCCGCTAGCGGTGGCAGTAGTGCTG
CCCACGTGAACTCTCTCGGCATTTCCGGCCGACCTCATTTGCATTGTGCC
GTTGATAATGCCTGCTTGTCTTCGTCCAGGATTATGCGTTTGCTCGTTGA
TGCTGGAGCAGACACGTATTCGGCTGTTCAAATCACGAGCCCTTTTGGGA
TGCCCATGAGGATTACACCCCTGGATCTCACGAACAGTTACCTATTTACG
AAGGTCATCAGAGGAAATATCGCCACAGAAGAGCAATTACACAGCCTGGA
GGCCATCCGGCGGTTGCTATTGAGGGTAGAGGCAGCTCATGCAGTTTCTT
GGCTATGGGCAAGCGACATTTCCTCCGTCACCCACGCTGCTGCTGTAGAG
GGCACAGGCAAGGCCAAGGCATGTTCGACCCCGCTGGCATCGGTGTTGCC
GATCTTGAGGCAAAGAGCTGGAAGGTCCAGGGTGCTCTTGGCTGCCCTTT
TCAGGAATGCGAAAAAGCCTTGAGAATGCGAAAAAGCCTTGA
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