mRNA_L-elsbetiae_contig1436.3221.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1436.3221.1
Unique NamemRNA_L-elsbetiae_contig1436.3221.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1436.3221.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.310e-15
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = -2 
Query:  210 HMKNLIQAIGKGHVGSLREVNWDALAG-GETAVTNLMLEALSRGKCPEIEFLSFINNRGFDQASLSNLTKGLKACPKLREVRMDTNMAPQEQLQALVKMLEEGDMPRLKRLEIRIPREVSVDLEEEVKDKMEELKRAASSRS 632
            H ++L + +  G    LR + WD  +   + +V +++L ALS GKCP +E LSF  NR   + S+  L + L  CP+LRE+RMD +  P  QL+ LV  L  G +PRL+RL +R       D + E+      LKRAA+SRS
Sbjct:  154 HFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLA----LKRAAASRS 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1436.3221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAY2_ECTSI1.310e-1539.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1436contigL-elsbetiae_contig1436:11019..11657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size641
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.1816244-UTR-L-elsbetiae_contig1436:11018..113091622815574.1816244-UTR-L-elsbetiae_contig1436:11018..11309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1436 11019..11309 +
1691682968.0586758-UTR-L-elsbetiae_contig1436:11018..113091691682968.0586758-UTR-L-elsbetiae_contig1436:11018..11309Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1436 11019..11309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.192815-CDS-L-elsbetiae_contig1436:11309..116571622815574.192815-CDS-L-elsbetiae_contig1436:11309..11657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1436 11310..11657 +
1691682968.0672708-CDS-L-elsbetiae_contig1436:11309..116571691682968.0672708-CDS-L-elsbetiae_contig1436:11309..11657Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1436 11310..11657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1436.3221.1prot_L-elsbetiae_contig1436.3221.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1436 11310..11657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1436.3221.1

>prot_L-elsbetiae_contig1436.3221.1 ID=prot_L-elsbetiae_contig1436.3221.1|Name=mRNA_L-elsbetiae_contig1436.3221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
MRISRRLRRGMSPSSSILTSAWSCSCGAMLVSMRTSRSLGQAFNPFVRLE
RLAWSNPLLLIKLRNSISGHFPRESASSIKLVTAVSPPASASQFTSRRLP
TCPLPIAWMRFFMWLS
back to top

mRNA from alignment at L-elsbetiae_contig1436:11019..11657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1436.3221.1 ID=mRNA_L-elsbetiae_contig1436.3221.1|Name=mRNA_L-elsbetiae_contig1436.3221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=639bp|location=Sequence derived from alignment at L-elsbetiae_contig1436:11019..11657+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCATGATGCCTTATAAGGCATAGTCTACACCAACACTGCCTTAGACCG
AATACCTTGATCGCATAGCACTTCAACTCAGATTGGCCTACTGGGCGTTC
GCGCGGTACCCTGGGAAGTCCCACTACATCCAACCGAGTAGTGAATTCAC
CACGAGTTGAGGGTCGCCTCACCAAACCACATCACCAAGTTGACAGGAGA
CCCAAACTCACTCCTTGAAGAAGCCGCCCGCTTTAGTTCCTCCATTTTGT
CCTTGACTTCCTCCTCGAGGTCGACTGAAACCTCACGAGGAATGCGTATT
TCTAGACGCTTGAGGCGAGGCATGTCGCCCTCTTCGAGCATCTTGACCAG
CGCCTGGAGCTGCTCCTGCGGTGCCATGTTGGTATCCATGCGAACCTCGC
GAAGTTTGGGGCAAGCTTTCAACCCTTTCGTGAGGTTGGAGAGGCTTGCT
TGGTCGAACCCCCTGTTATTGATAAAGCTGAGAAACTCGATCTCCGGGCA
TTTCCCACGCGAAAGCGCTTCGAGCATCAAGTTGGTCACTGCCGTTTCCC
CTCCAGCAAGCGCATCCCAGTTTACTTCGCGAAGACTGCCGACATGCCCC
TTGCCAATCGCCTGGATGAGGTTCTTCATGTGGCTCTCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1436:11019..11657+

>mRNA_L-elsbetiae_contig1436.3221.1 ID=mRNA_L-elsbetiae_contig1436.3221.1|Name=mRNA_L-elsbetiae_contig1436.3221.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig1436:11019..11657+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTATTTCTAGACGCTTGAGGCGAGGCATGTCGCCCTCTTCGAGCAT
CTTGACCAGCGCCTGGAGCTGCTCCTGCGGTGCCATGTTGGTATCCATGC
GAACCTCGCGAAGTTTGGGGCAAGCTTTCAACCCTTTCGTGAGGTTGGAG
AGGCTTGCTTGGTCGAACCCCCTGTTATTGATAAAGCTGAGAAACTCGAT
CTCCGGGCATTTCCCACGCGAAAGCGCTTCGAGCATCAAGTTGGTCACTG
CCGTTTCCCCTCCAGCAAGCGCATCCCAGTTTACTTCGCGAAGACTGCCG
ACATGCCCCTTGCCAATCGCCTGGATGAGGTTCTTCATGTGGCTCTCGAT
GCGTATTTCTAGACGCTTGAGGCGAGGCATGTCGCCCTCTTCGAGCATCT
TGACCAGCGCCTGGAGCTGCTCCTGCGGTGCCATGTTGGTATCCATGCGA
ACCTCGCGAAGTTTGGGGCAAGCTTTCAACCCTTTCGTGAGGTTGGAGAG
GCTTGCTTGGTCGAACCCCCTGTTATTGATAAAGCTGAGAAACTCGATCT
CCGGGCATTTCCCACGCGAAAGCGCTTCGAGCATCAAGTTGGTCACTGCC
GTTTCCCCTCCAGCAAGCGCATCCCAGTTTACTTCGCGAAGACTGCCGAC
ATGCCCCTTGCCAATCGCCTGGATGAGGTTCTTCATGTGGCTCTCG
back to top