mRNA_L-elsbetiae_contig14340.3209.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14340.3209.1
Unique NamemRNA_L-elsbetiae_contig14340.3209.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14340.3209.1 vs. uniprot
Match: D7FI26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.480e-52
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  340 TLGEEAEELWARFCKVRGDLVTPLELDFPWMTGGSLARVDGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEV 615
            T+ EEAEELWARFCKVRGDLVTPLELDFPW+T GSLARV+GFGAHTA+KLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVC GARRCVEV
Sbjct:  163 TVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCTGARRCVEV 254
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BLAST of mRNA_L-elsbetiae_contig14340.3209.1 vs. uniprot
Match: A0A835YSW0_9STRA (U3-containing 90S pre-ribosomal complex subunit-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.730e-13
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:  331 ASATLGEEAEELWARFCKVRGDLVTPLELDFPWMTGGSLARVDGFGAHTAIKLVGFIKASLPDWKKRI-----QNRNSNA--------PRG-----------SPSVLIVCAGARRCVEV 615
            ++ T  + A+ +W R C V G  +  +EL  PW+    +A ++ FGAHT  KL G+IKA+LP+W+        ++R S          PRG           SP ++IVC+GARRC+EV
Sbjct:  119 SALTAQQAADAVWERCCAVLGPQLAEIELLTPWVEAEDMAVLEQFGAHTIAKLPGYIKATLPNWRALTAAAPAKDRGSGGAVKWGAGKPRGGGAKPPAPGAGSPPIVIVCSGARRCMEV 237
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BLAST of mRNA_L-elsbetiae_contig14340.3209.1 vs. uniprot
Match: A0A7S3XUU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU3_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 1.200e-6
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:  367 WARFCKVRGDLVTPLELDFPWMTGGSLARVDGFGAHTAIKLVGFIKASLPDWKKRIQ---------NRNSNAP--RGSPSVLIVCAGARRCVEV 615
            WA++  V G  +T LEL    +  G+   V    A     LV F+KA +P WK ++Q          R + AP  RGSP VL+VCAGARRCV +
Sbjct:   12 WAKYVGVMGGKLTDLELRPENVPEGAFLPV----AAPPEPLVDFVKAHVPGWKVKLQLAKGQNRKFARAAAAPQARGSPRVLVVCAGARRCVAL 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14340.3209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI26_ECTSI1.480e-5292.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSW0_9STRA3.730e-1336.13U3-containing 90S pre-ribosomal complex subunit-do... [more]
A0A7S3XUU3_HETAK1.200e-640.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14340contigL-elsbetiae_contig14340:134..2929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score182.2
Seed ortholog evalue2.5e-43
Seed eggNOG ortholog2880.D7FI26
Preferred nameCMSS1
KEGG koko:K11858,ko:K14784
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0032991,GO:0042254,GO:0042274,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0071840,GO:1990904
EggNOG free text desc.U3-containing 90S pre-ribosomal complex subunit
EggNOG OGsKOG3089@1,KOG3089@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Exons3
Model size615
Cds size615
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14340.3209.1prot_L-elsbetiae_contig14340.3209.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14340 134..2929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.2508547-CDS-L-elsbetiae_contig14340:133..2431622815573.2508547-CDS-L-elsbetiae_contig14340:133..243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14340 134..243 -
1691682967.5737019-CDS-L-elsbetiae_contig14340:133..2431691682967.5737019-CDS-L-elsbetiae_contig14340:133..243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14340 134..243 -
1622815573.2663598-CDS-L-elsbetiae_contig14340:1119..14171622815573.2663598-CDS-L-elsbetiae_contig14340:1119..1417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14340 1120..1417 -
1691682967.5926256-CDS-L-elsbetiae_contig14340:1119..14171691682967.5926256-CDS-L-elsbetiae_contig14340:1119..1417Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14340 1120..1417 -
1622815573.2860947-CDS-L-elsbetiae_contig14340:2722..29291622815573.2860947-CDS-L-elsbetiae_contig14340:2722..2929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14340 2723..2929 -
1691682967.6039598-CDS-L-elsbetiae_contig14340:2722..29291691682967.6039598-CDS-L-elsbetiae_contig14340:2722..2929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14340 2723..2929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14340.3209.1

>prot_L-elsbetiae_contig14340.3209.1 ID=prot_L-elsbetiae_contig14340.3209.1|Name=mRNA_L-elsbetiae_contig14340.3209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
TALAGRKRGRAQLSAEGFEESDGGGGGTGSDDDQEEEEEDEESRLKAAAE
EEAKLRRAEKKKQKLKALKAKMKEKKKQRSAEEEAAAAAATAARGGQAGK
GKGAAAVAAVASATLGEEAEELWARFCKVRGDLVTPLELDFPWMTGGSLA
RVDGFGAHTAIKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGAR
RCVEV
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mRNA from alignment at L-elsbetiae_contig14340:134..2929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14340.3209.1 ID=mRNA_L-elsbetiae_contig14340.3209.1|Name=mRNA_L-elsbetiae_contig14340.3209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2796bp|location=Sequence derived from alignment at L-elsbetiae_contig14340:134..2929- (Laminarionema elsbetiae ELsaHSoW15)
ACCGCGCTGGCCGGCCGGAAGCGTGGGCGGGCGCAGCTGAGCGCGGAGGG
TTTCGAGGAGAGCGACGGCGGCGGCGGCGGGACGGGGAGCGATGACGACC
AAGAAGAAGAGGAGGAGGACGAGGAGTCCAGGCTGAAGGCGGCGGCGGAG
GAGGAGGCGAAGCTCAGGCGCGCGGAGAAGAAGAAACAGAAGCTCAAGGC
GCTCAAGGTGCGATAGGTAGTAACCTCGGTCTCGCCTCGCCTCGCCGGTT
TGGGACAGGACGGCGATTCATACACTTCGTATCATGCGTAGATACGTACT
CGGTACTTTTTTTTCTCTCTTCCCTCTCCCATTATTGGCTTATTTATTCG
ACGTCTGCCCCACCGGCCCCCTTCTTCCCAGGACGACTAATTAATTAGCT
AGACGACCCAGCCGGGGTCACAACACACGCGTGTATGTACTTGGTACACA
CCACCAGCAGCATATTTTGCTATTTTGTGTACCGTAATCATGCGGGTTAT
CGCACCCCCGTGTGAGCGTTTTTCTATTGCGTATTTCTCCACAACCACCC
TTTTCGGCAGTGGTACCCTCCTGGTTGTGGAGAAATACGCTATAGAAAAA
CGCTAACACGGGGGTGCGATAACCCGCATGATTTTTCGAGACGTCTCGTC
GGGGGCTTTCCAGAGAGGTATCAGTTAGTGTTGGCGCCCTCCTTGTTGGG
GAGAAATAGGCAATAGAAAAACGCTAACACGGGGGTGCGATAACCCGCAT
GATTACGGTATGCGGACGCCTTGTCGCGGCAATGAATAAATTAATTTCTT
GGGGGATTTTTGTCGGCGGCTCAGCCTGCGGTTCTCGTCTCGTTTCCCTT
TTTTTTTCTTTTTTTTCTTACGTTTCCACGCGGTTCAGGAACCGCCCCGC
CTCCCATGGTGTTCAGCTCGTACACTCCGTATATACAGCAGCAGTAAATT
AGCAGGTGCTGGATTGATGTGCGGGGGTCTTTCGGCCGTGTCATGTGGTG
GGCCCGGTGGTTTGTCGCCCCTTCCGCCGGCAGTCACGCCGCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNN
NNNGCCGCGTAGCACACCCTCACCCCTTCCCTCGGGCTGACGATGGCGCC
CGTCTGCGGCGGCCCGACAATATCATCGTCTCCCCCCCTCCCCCGCGCGC
CTATTTAGTATCTGTTGGCTCACCGTTTTTGTTCCATCGTACATAAGTTC
TCCTACATCGGTAAATATACCAGAAGAATATGCATCGGTTCAGTAATAAT
GGGGGAATTATGTACACAAGTACGGGCCCAGATAAACGCCCAGACTCTTT
CCTATAAGTTGTTGCCTGATCTTTTGACCTCGTGGCCGACTGGTGTTGGT
CGTACGAAACGCTGCCATCGATCGTGCGGCCTTTCTTTCGTCGGGAATCC
TTCCTATACTATGTGTTTTATGTTTTTTATGTTATGTACATGGATACATT
TGTACGAAAAAGGCAAAGATGAAGGAGAAGAAGAAACAGCGGTCCGCCGA
GGAGGAAGCCGCTGCCGCTGCGGCGACGGCGGCACGAGGAGGTCAGGCCG
GGAAGGGGAAGGGAGCCGCGGCGGTGGCGGCGGTGGCCAGCGCGACGCTC
GGGGAGGAGGCCGAGGAGCTGTGGGCCAGGTTCTGCAAGGTCAGGGGGGA
TCTCGTGACCCCGCTCGAGCTTGACTTCCCGTGGATGACGGGCGGGTCGC
TGGCCCGCGTGGATGGGTTCGGCGCCCACACCGCCATCAAGCTCGTGGGG
TTCATAAAGGGTGAGCGAGGCCATCGATCGGGTTTTACTGTTGCTCTCAG
GAGCGGTTGGTGTGTGTGTGCTTTATATGTATATACCATATCATTTTTTC
TTCTTCAAAATTATTTCCAGTGCTCGACGGGCTCCTTGCCACGAGGGAGG
GCATCTTGCCAGAGCACCGAACCGTGGTCACACAGAAGGGTTTACTCTCC
CCGAGCCCCCCACTCCCACCTTCTGCGGTGCTTGCCTTAAGATTTTTATC
GCGAGAAGCGTTCAGCTTTCTCCCTCAAGTGTATATGTAGTACATAACAT
ACACAGTGTGCCTAAAACACCCTGTCTTAGAGATTCTCTCATGTCGACGA
GGAAGCTATTTCGCGCCTTTCCCGTTCCTTGGAATTCCCCCCGACTACTC
GTGATATAAGAGGGGTGCATTTTAGCACGCCCATTCACGGTACACTCATT
CAACATGCGTTAGGTAGCCCTGCTATTTGGTTGCATGCACCCTTTGCCGT
GCGTGCTGCCCCGACCGCACTGAACCCTCTCTACAGCCGTATAAAGCCAG
CCGTGTGTTCCGTCCGTAGGTAACACAGGATACCACACCCCCGGGACATA
TTTCCAAAGCTCGATTCGTCCCCAGCAAGAAGAGTGCCAGTGCCGAAGGG
GGGGTGGCGTTGGGAAGATCTAGTCGAGAGCTGCCCGAAAATGTGTGGTT
TGGTGCTGGCACCCTCTTCGTTACGGAGTAATGGAGCTCTAAAAGTCGGT
CGTCCCGGGGTGTGTGGTATCTTGTGTCACCTACGGTCCATAATCGCCGG
ACGGGCAACCTTCCTAAGCGTTCGGACGCACGTCTGACGCTTCGCCCCTC
TCTCTCTCTGTAATCGCGCCCGCCTTGATTTCGCAGCATCCCTGCCCGAC
TGGAAGAAGAGAATACAGAACAGAAACAGCAACGCGCCCCGAGGAAGCCC
GTCTGTGCTCATCGTCTGCGCCGGAGCGCGACGTTGTGTCGAGGTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14340:134..2929-

>mRNA_L-elsbetiae_contig14340.3209.1 ID=mRNA_L-elsbetiae_contig14340.3209.1|Name=mRNA_L-elsbetiae_contig14340.3209.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig14340:134..2929- (Laminarionema elsbetiae ELsaHSoW15)
ACCGCGCTGGCCGGCCGGAAGCGTGGGCGGGCGCAGCTGAGCGCGGAGGG
TTTCGAGGAGAGCGACGGCGGCGGCGGCGGGACGGGGAGCGATGACGACC
AAGAAGAAGAGGAGGAGGACGAGGAGTCCAGGCTGAAGGCGGCGGCGGAG
GAGGAGGCGAAGCTCAGGCGCGCGGAGAAGAAGAAACAGAAGCTCAAGGC
GCTCAAGACCGCGCTGGCCGGCCGGAAGCGTGGGCGGGCGCAGCTGAGCG
CGGAGGGTTTCGAGGAGAGCGACGGCGGCGGCGGCGGGACGGGGAGCGAT
GACGACCAAGAAGAAGAGGAGGAGGACGAGGAGTCCAGGCTGAAGGCGGC
GGCGGAGGAGGAGGCGAAGCTCAGGCGCGCGGAGAAGAAGAAACAGAAGC
TCAAGGCGCTCAAGGCAAAGATGAAGGAGAAGAAGAAACAGCGGTCCGCC
GAGGAGGAAGCCGCTGCCGCTGCGGCGACGGCGGCACGAGGAGGTCAGGC
CGGGAAGGGGAAGGGAGCCGCGGCGGTGGCGGCGGTGGCCAGCGCGACGC
TCGGGGAGGAGGCCGAGGAGCTGTGGGCCAGGTTCTGCAAGGTCAGGGGG
GATCTCGTGACCCCGCTCGAGCTTGACTTCCCGTGGATGACGGGCGGGTC
GCTGGCCCGCGTGGATGGGTTCGGCGCCCACACCGCCATCAAGCTCGTGG
GGTTCATAAAGGGCAAAGATGAAGGAGAAGAAGAAACAGCGGTCCGCCGA
GGAGGAAGCCGCTGCCGCTGCGGCGACGGCGGCACGAGGAGGTCAGGCCG
GGAAGGGGAAGGGAGCCGCGGCGGTGGCGGCGGTGGCCAGCGCGACGCTC
GGGGAGGAGGCCGAGGAGCTGTGGGCCAGGTTCTGCAAGGTCAGGGGGGA
TCTCGTGACCCCGCTCGAGCTTGACTTCCCGTGGATGACGGGCGGGTCGC
TGGCCCGCGTGGATGGGTTCGGCGCCCACACCGCCATCAAGCTCGTGGGG
TTCATAAAGGCATCCCTGCCCGACTGGAAGAAGAGAATACAGAACAGAAA
CAGCAACGCGCCCCGAGGAAGCCCGTCTGTGCTCATCGTCTGCGCCGGAG
CGCGACGTTGTGTCGAGGTACATCCCTGCCCGACTGGAAGAAGAGAATAC
AGAACAGAAACAGCAACGCGCCCCGAGGAAGCCCGTCTGTGCTCATCGTC
TGCGCCGGAGCGCGACGTTGTGTCGAGGTA
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