mRNA_L-elsbetiae_contig14320.3196.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14320.3196.1
Unique NamemRNA_L-elsbetiae_contig14320.3196.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14320.3196.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.620e-35
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 2 
Query:  215 QTLVSWIHQRYVWHAETVFAPSSHIVYYEQAKENHLHLIDMAAFMGLACSPDQAFKVWQLHSSESSRGDYTTHDLPGSTIEWMNATMSRLLPPNLALHWGLAATEL 532
            + LVSW HQRY+WH ETV APSSH+V+YE  K++H   I MA FMGL CS + A +VW+ H + +  GDY+TH L   T++WMN TM+RLLPP+LAL WG+  T+L
Sbjct:  279 EILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTDL 384
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BLAST of mRNA_L-elsbetiae_contig14320.3196.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.570e-34
Identity = 61/106 (57.55%), Postives = 78/106 (73.58%), Query Frame = 2 
Query:  215 QTLVSWIHQRYVWHAETVFAPSSHIVYYEQAKENHLHLIDMAAFMGLACSPDQAFKVWQLHSSESSRGDYTTHDLPGSTIEWMNATMSRLLPPNLALHWGLAATEL 532
            + LVSW HQRY+WH ETV APSSH+V+YE  K++H   I MA FMGLACS + A +VW+ H + +  GDY+TH L   TI+WMN TM+RLLPP+LA  WG+  T+L
Sbjct:  345 EILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTDL 450
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BLAST of mRNA_L-elsbetiae_contig14320.3196.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.640e-29
Identity = 61/134 (45.52%), Postives = 77/134 (57.46%), Query Frame = 2 
Query:  215 QTLVSWIHQRYVWHAETVFAPSSHIVYYEQA-----------------------------KENHLHLIDMAAFMGLACSPDQAFKVWQLHSSESSRGDYTTHDLPGSTIEWMNATMSRLLPPNLALHWGLAATE 529
            QT+VSW HQR+VWH ETV + SSH+++Y+                               K N + +ID+AAFMGL CS DQA  VW+ H +    GDYTTH L   TIEWMNATM+ LLP  ++LHWGL  T+
Sbjct:  165 QTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 298
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BLAST of mRNA_L-elsbetiae_contig14320.3196.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 6.980e-29
Identity = 58/106 (54.72%), Postives = 70/106 (66.04%), Query Frame = 2 
Query:  215 QTLVSWIHQRYVWHAETVFAPSSHIVYYEQAKENHLHLIDMAAFMGLACSPDQAFKVWQLHSSESSRGDYTTHDLPGSTIEWMNATMSRLLPPNLALHWGLAATEL 532
            + LVSWIHQRY+WH  T+  PSSHI  YE+ + +HL LID+A FMGL CS  QA KVW      S  G Y +  L   T+ +MNATM+RLLPP LAL W +  TEL
Sbjct:  193 EVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 298
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BLAST of mRNA_L-elsbetiae_contig14320.3196.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.540e-26
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 2 
Query:  215 QTLVSWIHQRYVWHAETVFAPSSHIVYYEQAKENHLHLIDMAAFMGLACSPDQAFKVWQLHSSESSRGDYTTHDLPGSTIEWMNATMSRLLPPNLALHWGLAATEL 532
            + LVSW+HQRY+WH   +  PSSH+ +Y++ +++ +  + +A  MGL CS DQA+KVW+ H   S  G + T  L  +TI++MNATM+RLLPP++A+ WGL  TEL
Sbjct:  296 EVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTPTEL 400
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14320.3196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXT7_ECTSI3.620e-3556.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6E2_9PHAE1.570e-3457.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLX3_9PHAE2.640e-2945.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JZR3_9PHAE6.980e-2954.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L183_9PHAE1.540e-2648.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14320contigL-elsbetiae_contig14320:3123..4388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_005020.2
Exons2
Model size1046
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14320.3196.1prot_L-elsbetiae_contig14320.3196.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14320 3634..4246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.1389456-UTR-L-elsbetiae_contig14320:3122..36331622815572.1389456-UTR-L-elsbetiae_contig14320:3122..3633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14320 3123..3633 -
1691682966.888824-UTR-L-elsbetiae_contig14320:3122..36331691682966.888824-UTR-L-elsbetiae_contig14320:3122..3633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14320 3123..3633 -
1622815572.1887686-UTR-L-elsbetiae_contig14320:4246..43881622815572.1887686-UTR-L-elsbetiae_contig14320:4246..4388Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14320 4247..4388 -
1691682966.9275177-UTR-L-elsbetiae_contig14320:4246..43881691682966.9275177-UTR-L-elsbetiae_contig14320:4246..4388Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14320 4247..4388 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.154347-CDS-L-elsbetiae_contig14320:3633..38581622815572.154347-CDS-L-elsbetiae_contig14320:3633..3858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14320 3634..3858 -
1691682966.908153-CDS-L-elsbetiae_contig14320:3633..38581691682966.908153-CDS-L-elsbetiae_contig14320:3633..3858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14320 3634..3858 -
1622815572.1721349-CDS-L-elsbetiae_contig14320:4078..42461622815572.1721349-CDS-L-elsbetiae_contig14320:4078..4246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14320 4079..4246 -
1691682966.9172435-CDS-L-elsbetiae_contig14320:4078..42461691682966.9172435-CDS-L-elsbetiae_contig14320:4078..4246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14320 4079..4246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14320.3196.1

>prot_L-elsbetiae_contig14320.3196.1 ID=prot_L-elsbetiae_contig14320.3196.1|Name=mRNA_L-elsbetiae_contig14320.3196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MCYILMQAKILRALINLLFYYLAAQTLVSWIHQRYVWHAETVFAPSSHIV
YYEQAKENHLHLIDMAAFMGLACSPDQAFKVWQLHSSESSRGDYTTHDLP
GSTIEWMNATMSRLLPPNLALHWGLAATEL*
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mRNA from alignment at L-elsbetiae_contig14320:3123..4388-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14320.3196.1 ID=mRNA_L-elsbetiae_contig14320.3196.1|Name=mRNA_L-elsbetiae_contig14320.3196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig14320:3123..4388- (Laminarionema elsbetiae ELsaHSoW15)
CCTTTTAAGTCCTTTATTGGCCCCCTATTGGAGTATCGTGTGTGAACGTT
CAACTATTACCTATCGTAGGGAGACCACAAAAAGCATGTGTCTTAGAAAA
CCGTGCACCGCCTGAACGCGGGCACGATACCAATGTATCGAAATGTGTTA
TATTTTAATGCAAGCTAAAATTCTGCGAGCATTGATCAATCTTCTGTTTT
ATTATCTCGCCGCGCAGACCCTTGTCTCCTGGATACATCAGCGATACGTT
TGGCACGCCGAAACAGTCTTCGCCCCGTCGTCGCACATTGTCTACTACGA
GCAAGCGAAGGTAGGTGTCAAAAATGGTTTATTTTCCGTACATAAGCCAG
TCATACTTGGCTTCGTAACCCTTTCGCACGTTTAGACTATATTTAGAGCC
AGTTTCACCTCTCAGTGAAAACCTGGCGATGCGTGAGGATATATGCATAA
ATGTTTTGATCCTACGAGAACAACTTACTTTACCAGATTCCTTAACCTGG
CGTCCACTCCCGCGATTCTTCGTGCTGCAGGAGAACCATCTTCATCTTAT
TGACATGGCTGCGTTCATGGGGCTCGCCTGTTCTCCTGATCAGGCTTTTA
AAGTTTGGCAGCTGCACAGCAGCGAGTCCTCCCGCGGGGACTACACTACT
CACGACCTGCCGGGCTCAACTATCGAGTGGATGAATGCTACTATGTCACG
TTTGCTTCCCCCGAATTTGGCCCTGCACTGGGGGCTTGCTGCAACAGAAC
TCTGATTAAGATAGGCCGGCTAGTGTACGTCAAAATGTGTTGCTTCTGAT
GATTGCATGAGCTGCCGTTATTTTACTGCCGTGAATGGCAAAATAACAAC
GCCGCGATCGATATTGTTTGCTTGGTTGATGATGGGGCTAGTGTGCTCGA
CAAAACGGGTCGTTTCATTGGAGCAACATTTTGAGAATACGGTATGTAGT
TGTTGCTATGCAGAGGTCGGGTGGGTGGCGCTGTCAGAGTTTTTTTTTGT
TTCTCCCGTGTCGGTCTCTTTGTACTGAACTACGTACTTAAAATGACCCC
AACTTACTCTCTGAGAGATGTGTAAGTAGTTAGCCTCCTGCCTAAATTGC
TTGACTGAAATATAAATAACGTCACTGTGTTTCTGGAGAGAGACCCCGTG
TCTTTTTTCAGGCCAAAACACGCTCTGCCGTTCTACATCCATTTGTGGGT
TAAATTTGTCTCTAACCGTTGTTAGAAGAAATCCTCCAAGACACAGCCTA
GCTGAGTGTAGAGCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14320:3123..4388-

>mRNA_L-elsbetiae_contig14320.3196.1 ID=mRNA_L-elsbetiae_contig14320.3196.1|Name=mRNA_L-elsbetiae_contig14320.3196.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig14320:3123..4388- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTTATATTTTAATGCAAGCTAAAATTCTGCGAGCATTGATCAATCT
TCTGTTTTATTATCTCGCCGCGCAGACCCTTGTCTCCTGGATACATCAGC
GATACGTTTGGCACGCCGAAACAGTCTTCGCCCCGTCGTCGCACATTGTC
TACTACGAGCAAGCGAAGATGTGTTATATTTTAATGCAAGCTAAAATTCT
GCGAGCATTGATCAATCTTCTGTTTTATTATCTCGCCGCGCAGACCCTTG
TCTCCTGGATACATCAGCGATACGTTTGGCACGCCGAAACAGTCTTCGCC
CCGTCGTCGCACATTGTCTACTACGAGCAAGCGAAGGAGAACCATCTTCA
TCTTATTGACATGGCTGCGTTCATGGGGCTCGCCTGTTCTCCTGATCAGG
CTTTTAAAGTTTGGCAGCTGCACAGCAGCGAGTCCTCCCGCGGGGACTAC
ACTACTCACGACCTGCCGGGCTCAACTATCGAGTGGATGAATGCTACTAT
GTCACGTTTGCTTCCCCCGAATTTGGCCCTGCACTGGGGGCTTGCTGCAA
CAGAACTCTGAGAGAACCATCTTCATCTTATTGACATGGCTGCGTTCATG
GGGCTCGCCTGTTCTCCTGATCAGGCTTTTAAAGTTTGGCAGCTGCACAG
CAGCGAGTCCTCCCGCGGGGACTACACTACTCACGACCTGCCGGGCTCAA
CTATCGAGTGGATGAATGCTACTATGTCACGTTTGCTTCCCCCGAATTTG
GCCCTGCACTGGGGGCTTGCTGCAACAGAACTCTGA
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