mRNA_L-elsbetiae_contig14238.3144.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14238.3144.1
Unique NamemRNA_L-elsbetiae_contig14238.3144.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14238.3144.1 vs. uniprot
Match: A0A6H5KY67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY67_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 8.670e-5
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 2 
Query:   17 KAEYCSGHSKDGMVDVSSKRCAHDGCTKVPSYG 115
            KAE+CS HSK GM++++ KRC H GC K PSYG
Sbjct:   45 KAEFCSKHSKPGMINLTKKRCGHPGCIKQPSYG 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14238.3144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY67_9PHAE8.670e-563.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14238contigL-elsbetiae_contig14238:1162..2858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1048
Cds size630
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14238.3144.1prot_L-elsbetiae_contig14238.3144.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14238 1528..2806 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.8890166-UTR-L-elsbetiae_contig14238:1161..15271622815567.8890166-UTR-L-elsbetiae_contig14238:1161..1527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14238 1162..1527 -
1691682964.3835423-UTR-L-elsbetiae_contig14238:1161..15271691682964.3835423-UTR-L-elsbetiae_contig14238:1161..1527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14238 1162..1527 -
1622815567.9260447-UTR-L-elsbetiae_contig14238:2806..28581622815567.9260447-UTR-L-elsbetiae_contig14238:2806..2858Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14238 2807..2858 -
1691682964.4206917-UTR-L-elsbetiae_contig14238:2806..28581691682964.4206917-UTR-L-elsbetiae_contig14238:2806..2858Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14238 2807..2858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.8997662-CDS-L-elsbetiae_contig14238:1527..15831622815567.8997662-CDS-L-elsbetiae_contig14238:1527..1583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14238 1528..1583 -
1691682964.3960192-CDS-L-elsbetiae_contig14238:1527..15831691682964.3960192-CDS-L-elsbetiae_contig14238:1527..1583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14238 1528..1583 -
1622815567.9118843-CDS-L-elsbetiae_contig14238:2232..28061622815567.9118843-CDS-L-elsbetiae_contig14238:2232..2806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14238 2233..2806 -
1691682964.4104257-CDS-L-elsbetiae_contig14238:2232..28061691682964.4104257-CDS-L-elsbetiae_contig14238:2232..2806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14238 2233..2806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14238.3144.1

>prot_L-elsbetiae_contig14238.3144.1 ID=prot_L-elsbetiae_contig14238.3144.1|Name=mRNA_L-elsbetiae_contig14238.3144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=210bp
MVDVSSKRCAHDGCTKVPSYGKAGGKAEYCRGHAKDEMVSIVGKICVFPG
CTTRANYGKKNTDTREFCARHVEEGMVRVCGRSSGGTRASGETDDAAEMG
GGTPSRAGAFGMHGSRVSEPSAADASSGGGSRKTNKRSADSADLHPVRVK
SEKVDNMVSDDESSTACPEADAVVKTENIGLPCKVEPTEAAGRASVARTK
RRKAAGGHV*
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mRNA from alignment at L-elsbetiae_contig14238:1162..2858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14238.3144.1 ID=mRNA_L-elsbetiae_contig14238.3144.1|Name=mRNA_L-elsbetiae_contig14238.3144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1697bp|location=Sequence derived from alignment at L-elsbetiae_contig14238:1162..2858- (Laminarionema elsbetiae ELsaHSoW15)
CGGCAAGGCTGGCGGCAAGGCGGAATACTGCAGTGGCCATTCTAAGGACG
GGATGGTGGACGTGAGTAGCAAGAGGTGCGCCCACGACGGTTGCACCAAG
GTGCCGTCATACGGCAAGGCTGGCGGCAAGGCGGAATATTGCCGTGGTCA
TGCTAAGGACGAAATGGTGAGCATTGTCGGCAAAATATGCGTTTTTCCTG
GGTGCACCACGAGGGCTAACTACGGCAAGAAAAACACTGACACCCGTGAG
TTTTGCGCACGACACGTAGAGGAAGGCATGGTCCGTGTTTGTGGCCGGTC
CAGCGGGGGCACCCGAGCAAGTGGTGAGACTGATGATGCGGCAGAAATGG
GTGGCGGCACTCCTAGCCGTGCTGGTGCCTTTGGAATGCACGGGAGCCGC
GTTTCTGAGCCCTCCGCCGCAGATGCCTCCTCCGGCGGCGGGAGCAGGAA
GACTAACAAGCGTTCTGCTGATAGCGCGGACTTGCACCCAGTTCGGGTGA
AGAGCGAGAAGGTCGACAACATGGTGTCCGACGACGAAAGTTCTACGGCA
TGTCCGGAGGCAGACGCTGTGGTGAAGACGGAGAACATCGGGCTGCCTTG
CAAGGTGGAGCCGACAGAAGCTGCAGGTGCATTGAAACAAAGGCTGTTGG
ATGTCTCGTAGTGCTGCCGAGCTTCCATGTTGGAGAATGAGAGAGACGAT
GGTTGAAGGCACACTCCGCTACAGTAGTACCACGCACAACAACTGAAGAG
GCCCGTAGACACCGCCGCTGCAGGGATGCACGGCGATGAGGCTCAGTAAC
GGCGGCGGGATTGGCTTGGCAGTGTTACTCACCTCGGTTCGCCGCTTGCT
ATGCTTCTTGAGCGCTAGAGAGCCACGTGCTGTGTACAATTATCCTGTGA
TCGTATGTATGGTACAGAGGGGGCGTGTTTCACTCGCTTCGTGTCTCGTT
TTTCGGCGACCTATCCGTTGGTAAGTAAATTAAGCGGCCCAGCTTGAGCT
GCGACGGTCAGTCTGTTTTTGTCCCCCGCCGGGGTGGATCTCTCTTTGTT
ACCTCACCTGCCGCAGAAACCACTTTTGCTGGTTCTCGCCATTTGTTTCC
TAAAGCACAGACATCTTGGGGTTTGTCACCTCACCTACCGCATCACCAGC
CCACATGACCACTATCATGCTACCCGCTAGACTTGTTTTTTGCGCCTCAA
AATACGGGGACCTCATCTGGTTGTTGGGTGTCTGGATGCGACTCTCGTGC
GCCCGCCTCCTCCCAATCAATGCAGGCCGGGCAAGCGTAGCGAGGACGAA
GCGGAGAAAGGCCGCGGGAGGGCACGTGTGAGTTTCCTGATGTCGCCCCA
ACGGCAGCAGCACCGCAATATACGCGGCGAACCGTGGCGAGGTAGATTGG
CCACGAGCACCTGTAATTCGCGAATCCGCTGCAAAGCGTGCTGTTGTATC
ATAACGTCGTGGTTTTGTTCATCGCCGTCGGCTATTGTACATACATGCGT
TTGCACTTTTACGTTTGTTTTCTTTTCTTGTGGCACAATAGACGTACGGT
AGGTGTCTTCTGTACATGACGTCCATGTTGAGGGCTCAGACTGCCATCCC
AATTATGTGGCTTTGTTCGTGTCTCTTTTACTGTATTTTGGTCTGGGATT
GGGTTGTATGTTTTTCTTGAGTTGGTTGCCGATGTCCTGATGTTAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14238:1162..2858-

>mRNA_L-elsbetiae_contig14238.3144.1 ID=mRNA_L-elsbetiae_contig14238.3144.1|Name=mRNA_L-elsbetiae_contig14238.3144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig14238:1162..2858- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGACGTGAGTAGCAAGAGGTGCGCCCACGACGGTTGCACCAAGGT
GCCGTCATACGGCAAGGCTGGCGGCAAGGCGGAATATTGCCGTGGTCATG
CTAAGGACGAAATGGTGAGCATTGTCGGCAAAATATGCGTTTTTCCTGGG
TGCACCACGAGGGCTAACTACGGCAAGAAAAACACTGACACCCGTGAGTT
TTGCGCACGACACGTAGAGGAAGGCATGGTCCGTGTTTGTGGCCGGTCCA
GCGGGGGCACCCGAGCAAGTGGTGAGACTGATGATGCGGCAGAAATGGGT
GGCGGCACTCCTAGCCGTGCTGGTGCCTTTGGAATGCACGGGAGCCGCGT
TTCTGAGCCCTCCGCCGCAGATGCCTCCTCCGGCGGCGGGAGCAGGAAGA
CTAACAAGCGTTCTGCTGATAGCGCGGACTTGCACCCAGTTCGGGTGAAG
AGCGAGAAGGTCGACAACATGGTGTCCGACGACGAAAGTTCTACGGCATG
TCCGGAGGCAGACGCTGTGGTGAAGACGGAGAACATCGGGCTGCCTTGCA
AGGTGGAGCCGACAGAAGCTGCAGATGGTGGACGTGAGTAGCAAGAGGTG
CGCCCACGACGGTTGCACCAAGGTGCCGTCATACGGCAAGGCTGGCGGCA
AGGCGGAATATTGCCGTGGTCATGCTAAGGACGAAATGGTGAGCATTGTC
GGCAAAATATGCGTTTTTCCTGGGTGCACCACGAGGGCTAACTACGGCAA
GAAAAACACTGACACCCGTGAGTTTTGCGCACGACACGTAGAGGAAGGCA
TGGTCCGTGTTTGTGGCCGGTCCAGCGGGGGCACCCGAGCAAGTGGTGAG
ACTGATGATGCGGCAGAAATGGGTGGCGGCACTCCTAGCCGTGCTGGTGC
CTTTGGAATGCACGGGAGCCGCGTTTCTGAGCCCTCCGCCGCAGATGCCT
CCTCCGGCGGCGGGAGCAGGAAGACTAACAAGCGTTCTGCTGATAGCGCG
GACTTGCACCCAGTTCGGGTGAAGAGCGAGAAGGTCGACAACATGGTGTC
CGACGACGAAAGTTCTACGGCATGTCCGGAGGCAGACGCTGTGGTGAAGA
CGGAGAACATCGGGCTGCCTTGCAAGGTGGAGCCGACAGAAGCTGCAGGC
CGGGCAAGCGTAGCGAGGACGAAGCGGAGAAAGGCCGCGGGAGGGCACGT
GTGAGCCGGGCAAGCGTAGCGAGGACGAAGCGGAGAAAGGCCGCGGGAGG
GCACGTGTGA
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