mRNA_L-elsbetiae_contig1423.3141.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1423.3141.1
Unique NamemRNA_L-elsbetiae_contig1423.3141.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1423.3141.1 vs. uniprot
Match: A0A6H5K0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D2_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 2.670e-55
Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = 1 
Query:    1 MAFRMTGRALGALARERNDVQPALRKVWKAHEHVDGLVIRSISPYQLNLVETWARSVPKKVKTRFIEYGPELLMCWGLIYGIYTSHKKGFAQLHKDHRD 297
            MAFRMTGR LGA+ARERNDVQPALRKVWKA+E VDGLVIRSISPYQLNLV  +  ++PKK+KTRFIEYGPE++MC G++YG YTSHKKGFAQLHKDHRD
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAYEPVDGLVIRSISPYQLNLVRNFVTTIPKKLKTRFIEYGPEVMMCVGIVYGTYTSHKKGFAQLHKDHRD 99
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BLAST of mRNA_L-elsbetiae_contig1423.3141.1 vs. uniprot
Match: D7G6P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.520e-15
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MAFRMTGRALGALARERNDVQPALRKVWKAHEHVDGLVIR 120
            MAFRMTGR LGA+ARERNDVQPALRKVWKAHE VDGLV R
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVSR 40
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BLAST of mRNA_L-elsbetiae_contig1423.3141.1 vs. uniprot
Match: A0A2R5GU00_9STRA (Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU00_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 5.350e-8
Identity = 27/85 (31.76%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:   55 DVQPALRKVWKAHEHVDGLVIRSISPYQLNLVETWARSVPKKVKTRF----IEYGPELLMCWGLIYGIYTSHKKGFAQLHKDHRD 297
            +V P L K+WK ++ ++GLV R++SPYQ + +  W ++ P+K+K +      + GP +L+ +G +     +    F    K HRD
Sbjct:    7 NVHPGLAKLWKKYKPINGLVTRTVSPYQQDFITPWVKTWPEKMKHKISDNLFDVGPGVLVLFGTVAWADAT----FESEMKKHRD 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1423.3141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0D2_9PHAE2.670e-5581.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P4_ECTSI2.520e-1590.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GU00_9STRA5.350e-831.76Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1423contigL-elsbetiae_contig1423:16871..19967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000150.1
Exons3
Model size300
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1423.3141.1prot_L-elsbetiae_contig1423.3141.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1423 16871..19967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815567.6731882-CDS-L-elsbetiae_contig1423:16870..169901622815567.6731882-CDS-L-elsbetiae_contig1423:16870..16990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1423 16871..16990 -
1691682964.252882-CDS-L-elsbetiae_contig1423:16870..169901691682964.252882-CDS-L-elsbetiae_contig1423:16870..16990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1423 16871..16990 -
1622815567.688462-CDS-L-elsbetiae_contig1423:17730..177991622815567.688462-CDS-L-elsbetiae_contig1423:17730..17799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1423 17731..17799 -
1691682964.2710962-CDS-L-elsbetiae_contig1423:17730..177991691682964.2710962-CDS-L-elsbetiae_contig1423:17730..17799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1423 17731..17799 -
1622815567.7002711-CDS-L-elsbetiae_contig1423:19856..199671622815567.7002711-CDS-L-elsbetiae_contig1423:19856..19967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1423 19857..19967 -
1691682964.2818406-CDS-L-elsbetiae_contig1423:19856..199671691682964.2818406-CDS-L-elsbetiae_contig1423:19856..19967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1423 19857..19967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1423.3141.1

>prot_L-elsbetiae_contig1423.3141.1 ID=prot_L-elsbetiae_contig1423.3141.1|Name=mRNA_L-elsbetiae_contig1423.3141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MAFRMTGRALGALARERNDVQPALRKVWKAHEHVDGLVIRSISPYQLNLV
ETWARSVPKKVKTRFIEYGPELLMCWGLIYGIYTSHKKGFAQLHKDHRD*
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mRNA from alignment at L-elsbetiae_contig1423:16871..19967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1423.3141.1 ID=mRNA_L-elsbetiae_contig1423.3141.1|Name=mRNA_L-elsbetiae_contig1423.3141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3097bp|location=Sequence derived from alignment at L-elsbetiae_contig1423:16871..19967- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTTTCGAATGACCGGCCGCGCTCTTGGGGCGCTTGCAAGGGAGAG
GAATGACGTGCAGCCGGCGCTGAGGAAGGTTTGGAAGGCACACGAGCACG
TCGATGGCCTGGTGAGCAATTTACGCACAAAAGGCCCTCGGGGTCTCATT
CGTACGAACACGTCGGCGCTACGAGAAGTTCGCACCGGCGTGGTTGCCTT
GCGAGCGAAGAGAGGAGGATGTGATTGACTCACAGGATCCCTGTGGTTTT
GCAGCTACACCTGATGTTTGTGGCTTCTCCCAAACACAAACACACAAACA
CAATGGTTCGGTGTTGATCACGTTTCCATAAGCGACGTTTCGCGACCCTT
CTCTGTGCCGTCGCGACCCTTCTCTGTGCCGTCTATGCACGCGGCTCACG
TGACGGTGCAGCACCCCACCACGAAAAGGCTTCCTTCCAGACAGCGGTTT
TGACTGGGGGGTTAAGTATGATTGAATAGTATCAGCGTGCTTGGACTGCT
TCTCGCCAAGTACCCGCAATGCCAGTTTTCTCGAGAGTCTTCTTGATTAA
CGAAGATAACACCCCCCCCACGGTCGGGTCTGTTCACTTCTTCCTGCTGG
CCAGGCGATAACATACACCAAAAAATCGCTTTTTATTTTTTTAAGCACAC
CCCTCCACAGGGTTCCATTTGTGTTTTGATGCGGGCCTAATGCTGTCTCG
TAACACCCTCAATGGTTGCGCTCTTGGCCTTCACAACTTTACCGTGCAGC
TCCATCCCTCATCATGTAGACTGCTACTCTGTTTATCTGTGTGAAGACTA
CGAGTGTGTGTGTGTGTGCCCTTCCCATTTATTTTGGCGACAGTCGCCCC
AAGTGGAGACGTGAACTACACCTTGCGGTGTACTTAGAGGTACTACACTT
TGCAGTGCATTTGTGTACAATATTGTAATGACACCGGTTTTTATGGAGGG
AGCACAAGGTTGGCGAAGAAAGTCAAAGTTTCTGAACTTCCCGCTGCAAC
TTTTGTCATATACGCTCTTCATGGGATGACGAAGTTGCGAATAAAGCTGC
GACACTTTGACTTTGCACAAAAAACGCCCGATCGCGAGAGAAAGTTGGCA
AACTTTGCAGAGAGAAAATGTGGCAAAGGAAAATTTGAGCGGCGGGACTT
CAGCCAATCCACGTCAAGCACCTACCCCTACCACACTAGTTTACCCTCTC
CCGCCACGCGCACACATGCGATGCACTCGACAGATGAATGGCCGAGTCAG
ACTACTTGAAGGAACGAGTCGGGATTACCTGTGGCCGCAGCTACATATGT
CAAATACACGTGTATTGGATCTGCGTGAACAGTTTTGTCAAACGACATGA
CGATTGAAGTCTTCTGAGTTTCGATTGAAAGGCATGATGCTACAGTAGAT
TCGATACCATCAACTCGATTTCCATGTTGTAGTGTGGCGATCTGGCCGTA
TCTGGCCGGTTTCGCGGTGCTTATGAAGCGTGGGTGCTTGCCACTCGCCG
TCGCTAAAAAGAAAAACACAATCACGCCTCCGCATTCCAACAGTCCCGTG
AACAAAACTTTCGTCGCCCCATAGAGAGCGTGCATAAAAAGCTTCACTGG
TCAAGTTCCCGACATAAAGTCGCGAAAAAGCTTTGACTCCCTTCGTAACT
TTGCGCTCCCATAAAAACCGGTCTAGAGACCACAAACGTACGAGTGTTTA
GGATGTTGTTGTTGTTGTAGTTGCTTCTCACAACATTGGCATTGGCGCCC
ACCAGCAACCCCCAGCCCATTCCACACTCCCGGGTGTGATTCCGAGGATG
CGCAGTGCGGGAGGGGAAGAAACGAAACAGATACAAAATGTAACGAAGAA
GAGCACGCCTGCCTGCTGCCGGCAGTGGGGGCAGGTGCCAGTGGAGACAA
TAATAGGCAGTATCTTTGCACCCGCGGGCAGTAGGGGCAAAGGGGCCGTT
CAGGGGCAGCAAGGCAGAAGAGGAATGAGGAAGAACTACCCTGTAGCCTG
TAGTACAATCTCATCGCGTTTTTCGCCCCAGCTTTGTCACCGCTGTCCAG
CCTTCATCTCCGAGGGCGTGCTTCCTCTCCAGATTGTTGTCATATCATAG
TCCAGTCACTGCTGTGTTGGTTTCCGTACCTGTGTACGTGCGCCGTGATC
CTCATGTTCCCTTTTCAGGTCATCCGGTCAATCTCTCCTTACCAGCTCAA
CCTGGTTGAAACCTGGGCGAGGTCGGTCCCCAAGAAGGTCAGTACAGCAG
TCACTCAGAGGTCCAACTCTCCCTCCCTCTCTATCGTCTGTCTGTATGTC
TGTATGTCTGCCTCTCTCTCTTTATGTGTGTATGTGTGTTCTGTGCCATC
TGGCAACACATGAATATGGAGTTCTCGGGGATGTGCGGCAGGATCATTGT
TTCCTTGCAACGCAACTTTTACGATTCCTTCCGATGCGCTCACATGCACC
GCCACATTTTTTCCCGCACGTGTCTTAGGCCATGGGGTGTGAGATGGCAA
CACTCTTTGACGCTACTGCTGAAAACCTTTTGTGTTGATGATCGTACATA
CATACAACCGGCCTTATGGCAGACTTTTCGATTGCCGCGTCTCAATAAAC
TGTCTCTGTATCCTGCTCATGATGATGGTAATGCTCATGATAAGATGGGC
ACTCTTCAGTTTCGGAAAGTGGAGGTTGAAATATAGAAATATACCCGTAC
AACCGTACGACGTAGGGTAGGTTTGTTGCCGGGCCGGCGTCGGTGGTGTT
GCTCTTGTCTTTGCGATGGGCAGCAGCAGCTGGTGTGTCCCCTGCAGTAG
CTGGTGTGTCCCCTGCAGTAGCTGGTGTGTCCCCTAACCCTATGCTGTGC
ATTTCCACCATGAACTCAGACCAAAACTGTCGACGTTGTGACGTTGCTTC
CCCTTTCCCCCCCTGTTTGCTCTGGATATGCGTTGGTTCTTGACGTTGAT
CTTATTATGACCCAACATACATAATAGGTGAAGACTCGCTTCATCGAGTA
CGGGCCGGAATTGTTGATGTGCTGGGGGCTTATTTACGGCATCTACACGA
GCCACAAGAAGGGCTTCGCCCAGCTTCACAAGGACCACCGGGACTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1423:16871..19967-

>mRNA_L-elsbetiae_contig1423.3141.1 ID=mRNA_L-elsbetiae_contig1423.3141.1|Name=mRNA_L-elsbetiae_contig1423.3141.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig1423:16871..19967- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTTTCGAATGACCGGCCGCGCTCTTGGGGCGCTTGCAAGGGAGAG
GAATGACGTGCAGCCGGCGCTGAGGAAGGTTTGGAAGGCACACGAGCACG
TCGATGGCCTGATGGCTTTTCGAATGACCGGCCGCGCTCTTGGGGCGCTT
GCAAGGGAGAGGAATGACGTGCAGCCGGCGCTGAGGAAGGTTTGGAAGGC
ACACGAGCACGTCGATGGCCTGGTCATCCGGTCAATCTCTCCTTACCAGC
TCAACCTGGTTGAAACCTGGGCGAGGTCGGTCCCCAAGAAGGTCATCCGG
TCAATCTCTCCTTACCAGCTCAACCTGGTTGAAACCTGGGCGAGGTCGGT
CCCCAAGAAGGTGAAGACTCGCTTCATCGAGTACGGGCCGGAATTGTTGA
TGTGCTGGGGGCTTATTTACGGCATCTACACGAGCCACAAGAAGGGCTTC
GCCCAGCTTCACAAGGACCACCGGGACTAGGTGAAGACTCGCTTCATCGA
GTACGGGCCGGAATTGTTGATGTGCTGGGGGCTTATTTACGGCATCTACA
CGAGCCACAAGAAGGGCTTCGCCCAGCTTCACAAGGACCACCGGGACTAG
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